Wall clock time and date at job start Tue Mar 31 2020 23:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 120.00231 * 2 1 4 4 O 1.21284 * 119.99920 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.46970 * 180.02562 * 5 3 2 7 7 O 1.21283 * 120.00298 * 359.97438 * 6 5 3 8 8 N 1.34785 * 119.99844 * 179.97438 * 6 5 3 9 9 C 1.47153 * 120.98924 * 359.97438 * 8 6 5 10 10 C 1.53296 * 108.37670 * 129.42611 * 9 8 6 11 11 H 1.09000 * 109.51602 * 292.41847 * 10 9 8 12 12 C 1.53004 * 109.51244 * 172.26408 * 10 9 8 13 13 O 1.42971 * 109.23093 * 52.34062 * 10 9 8 14 14 C 1.42891 * 114.20178 * 297.51237 * 13 10 9 15 15 C 1.52994 * 109.55377 * 182.24522 * 14 13 10 16 16 C 1.53183 * 109.35326 * 59.06338 * 15 14 13 17 17 N 1.46938 * 108.77143 * 54.58173 * 16 15 14 18 18 C 1.36932 * 120.64187 * 126.30169 * 17 16 15 19 19 H 1.08004 * 120.00068 * 331.85002 * 18 17 16 20 20 C 1.38808 * 120.00420 * 151.86005 * 18 17 16 21 21 N 1.31629 * 119.99741 * 343.05470 * 20 18 17 22 22 Si 1.86795 * 120.00578 * 163.05579 * 20 18 17 23 23 H 1.48498 * 109.47306 * 89.99927 * 22 20 18 24 24 H 1.48501 * 109.47188 * 210.00099 * 22 20 18 25 25 H 1.48502 * 109.47252 * 329.99946 * 22 20 18 26 26 C 1.46916 * 118.71179 * 306.31703 * 17 16 15 27 27 C 1.52991 * 109.56355 * 302.55481 * 14 13 10 28 28 C 1.47159 * 120.98750 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47180 * 59.99312 * 1 2 3 30 30 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46891 * 300.00040 * 1 2 3 32 32 H 0.97001 * 119.99330 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.47031 * 60.00404 * 5 3 2 34 34 H 1.08997 * 109.47120 * 299.99870 * 5 3 2 35 35 H 1.09000 * 109.68423 * 249.14805 * 9 8 6 36 36 H 1.08997 * 109.68145 * 9.70818 * 9 8 6 37 37 H 1.08999 * 109.46433 * 60.00214 * 12 10 9 38 38 H 1.09002 * 109.47262 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47048 * 300.00685 * 12 10 9 40 40 H 1.09002 * 109.48955 * 179.02844 * 15 14 13 41 41 H 1.08998 * 109.48836 * 299.09464 * 15 14 13 42 42 H 1.09002 * 109.58761 * 294.79777 * 16 15 14 43 43 H 1.09006 * 109.70608 * 174.43843 * 16 15 14 44 44 H 0.96995 * 120.00236 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58816 * 293.88270 * 26 17 16 46 46 H 1.09003 * 109.70174 * 173.53302 * 26 17 16 47 47 H 1.08997 * 109.49186 * 60.89372 * 27 14 13 48 48 H 1.09004 * 109.48698 * 180.94379 * 27 14 13 49 49 H 1.08994 * 109.68017 * 350.19930 * 28 8 6 50 50 H 1.08997 * 109.67384 * 110.71220 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1483 2.5879 0.0011 7 8 3.3602 3.5098 0.0005 8 7 5.4734 2.8341 0.0022 9 6 6.4488 1.7323 0.0035 10 6 7.4619 1.9824 -1.1195 11 1 6.9662 1.8857 -2.0854 12 6 8.5962 0.9602 -1.0214 13 8 7.9957 3.3021 -0.9868 14 6 7.0251 4.3425 -1.1182 15 6 7.7161 5.7035 -1.0149 16 6 8.7725 5.8215 -2.1179 17 7 8.1318 5.5664 -3.4154 18 6 8.2453 6.4686 -4.4392 19 1 8.3835 7.5175 -4.2219 20 6 8.1825 6.0352 -5.7564 21 7 8.3494 4.7604 -6.0385 22 14 7.8613 7.2610 -7.1288 23 1 9.1538 7.7960 -7.6272 24 1 7.1445 6.5842 -8.2393 25 1 7.0303 8.3775 -6.6109 26 6 7.3669 4.3247 -3.5928 27 6 6.3257 4.2226 -2.4736 28 6 5.9878 4.2129 0.0033 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9499 -0.8401 0.0004 33 1 4.0096 0.6531 -0.8891 34 1 4.0089 0.6535 0.8908 35 1 6.9648 1.6999 0.9630 36 1 5.9348 0.7868 -0.1697 37 1 8.1880 -0.0457 -1.1183 38 1 9.3160 1.1384 -1.8204 39 1 9.0924 1.0596 -0.0561 40 1 6.9774 6.4964 -1.1324 41 1 8.1959 5.7947 -0.0404 42 1 9.5607 5.0878 -1.9490 43 1 9.1995 6.8245 -2.1121 44 1 8.3052 4.4574 -6.9588 45 1 8.0413 3.4698 -3.5435 46 1 6.8638 4.3379 -4.5597 47 1 5.8172 3.2606 -2.5366 48 1 5.5975 5.0267 -2.5795 49 1 5.1688 4.9104 -0.1717 50 1 6.4555 4.4293 0.9637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111542287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:19 Heat of formation + Delta-G solvation = -77.875757 kcal Electronic energy + Delta-G solvation = -31861.695971 eV Core-core repulsion = 27697.242333 eV Total energy + Delta-G solvation = -4164.453637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.82690 -39.79397 -38.27297 -36.35502 -34.82385 -34.41244 -33.58103 -31.56099 -31.22235 -30.06886 -29.61180 -27.40951 -26.61064 -25.91314 -24.00724 -22.60136 -21.69538 -21.26192 -20.54433 -19.15703 -18.92048 -17.76856 -17.06231 -16.92953 -16.23925 -15.97395 -15.69365 -15.36357 -15.15687 -14.71752 -14.60958 -14.30001 -13.79629 -13.69736 -13.56765 -13.41207 -13.20704 -13.16067 -12.85972 -12.58601 -12.54970 -12.34545 -12.15942 -11.95688 -11.75314 -11.47145 -11.42105 -11.37930 -10.99398 -10.69863 -10.54341 -10.35331 -10.25419 -10.21042 -9.96043 -9.77902 -9.55523 -9.39825 -9.36858 -9.26313 -8.40987 -8.30295 -6.58828 -5.73537 -3.14862 2.44087 2.59502 2.70071 3.18829 3.40959 3.47883 3.51084 3.90498 4.21545 4.50703 4.54961 4.70439 4.81765 4.86907 4.90877 5.00149 5.12587 5.16296 5.22967 5.27715 5.38080 5.42884 5.49776 5.51647 5.55229 5.63157 5.67355 5.83069 5.93767 6.04582 6.11177 6.11408 6.20857 6.32732 6.38699 6.47260 6.50787 6.60742 6.71163 6.86866 7.10630 7.17038 7.36091 7.43213 7.61459 7.73444 7.84598 8.03047 8.25392 8.50955 9.27558 9.91534 10.49278 11.35041 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.003271 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.900802 B = 8557.465103 C = 9446.442933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.510 3.490 4 O -0.489 6.489 5 C -0.165 4.165 6 C 0.515 3.485 7 O -0.495 6.495 8 N -0.614 5.614 9 C 0.078 3.922 10 C 0.069 3.931 11 H 0.069 0.931 12 C -0.141 4.141 13 O -0.355 6.355 14 C 0.119 3.881 15 C -0.117 4.117 16 C 0.152 3.848 17 N -0.591 5.591 18 C -0.249 4.249 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.182 3.818 27 C -0.160 4.160 28 C 0.091 3.909 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.400 0.600 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 -15.689 15.179 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.397 5.397 3 C 0.294 3.706 4 O -0.360 6.360 5 C -0.208 4.208 6 C 0.300 3.700 7 O -0.367 6.367 8 N -0.349 5.349 9 C -0.045 4.045 10 C 0.010 3.990 11 H 0.087 0.913 12 C -0.199 4.199 13 O -0.274 6.274 14 C 0.079 3.921 15 C -0.157 4.157 16 C 0.025 3.975 17 N -0.314 5.314 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.056 3.944 27 C -0.199 4.199 28 C -0.031 4.031 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.233 0.767 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.882 -14.389 15.042 22.258 hybrid contribution -0.162 -0.207 -0.796 0.838 sum -8.044 -14.596 14.246 21.925 Atomic orbital electron populations 1.21503 0.79480 1.02026 1.02451 1.45784 1.07766 1.08438 1.77686 1.20058 0.89222 0.84015 0.77354 1.90884 1.69370 1.30416 1.45366 1.21620 0.94701 0.98059 1.06392 1.19867 0.81907 0.90542 0.77658 1.90858 1.53715 1.45329 1.46778 1.48112 1.04966 1.07547 1.74288 1.22536 0.91417 0.89882 1.00667 1.22389 0.94365 0.85023 0.97180 0.91267 1.21695 0.98191 0.96614 1.03362 1.88007 1.34021 1.12722 1.92692 1.21733 0.87970 0.88751 0.93660 1.21990 1.00310 0.93210 1.00195 1.20789 0.92534 0.98610 0.85561 1.44017 1.57009 1.21378 1.08953 1.19178 1.44906 0.88701 0.85099 0.91763 1.25028 1.01139 0.96042 0.97528 1.70037 1.52885 1.13845 1.18034 0.86330 0.77980 0.80715 0.81963 1.21452 1.21642 1.20505 1.20620 0.90634 0.87829 0.95360 1.22703 1.00199 1.00477 0.96522 1.22444 0.98447 0.82843 0.99357 0.92204 0.90721 0.92306 0.76716 0.86063 0.86240 0.90643 0.89540 0.91409 0.90993 0.91960 0.90842 0.92246 0.95509 0.92917 0.93798 0.96102 0.89856 0.93378 0.91785 0.88384 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 59.85 0.64 1.26 16 2 N -0.74 -5.56 5.71 -67.08 -0.38 -5.94 16 3 C 0.51 6.02 7.82 -10.99 -0.09 5.94 16 4 O -0.49 -8.66 14.18 -18.96 -0.27 -8.93 16 5 C -0.16 -1.51 4.56 -29.04 -0.13 -1.64 16 6 C 0.51 7.44 7.71 -10.98 -0.08 7.36 16 7 O -0.49 -9.69 13.65 -18.96 -0.26 -9.95 16 8 N -0.61 -8.21 2.52 -172.27 -0.43 -8.65 16 9 C 0.08 0.79 5.83 -3.53 -0.02 0.77 16 10 C 0.07 0.90 3.02 -26.58 -0.08 0.82 16 11 H 0.07 1.02 6.29 -51.93 -0.33 0.69 16 12 C -0.14 -1.47 9.57 37.16 0.36 -1.11 16 13 O -0.36 -5.94 8.65 -35.23 -0.30 -6.24 16 14 C 0.12 2.05 0.68 -90.47 -0.06 1.99 16 15 C -0.12 -2.09 5.10 -26.64 -0.14 -2.23 16 16 C 0.15 3.26 6.28 -3.71 -0.02 3.23 16 17 N -0.59 -15.06 2.99 -172.32 -0.52 -15.58 16 18 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 19 H 0.06 1.76 7.89 -52.48 -0.41 1.35 16 20 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 21 N -0.90 -26.50 11.19 55.49 0.62 -25.88 16 22 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.18 4.40 5.07 -3.71 -0.02 4.38 16 27 C -0.16 -3.19 4.33 -26.63 -0.12 -3.31 16 28 C 0.09 1.40 5.30 -3.52 -0.02 1.38 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 1.46 8.83 -40.82 -0.36 1.10 16 33 H 0.12 0.79 7.66 -51.93 -0.40 0.40 16 34 H 0.12 0.66 8.01 -51.93 -0.42 0.24 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.57 6.05 -51.93 -0.31 0.25 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 43 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.53 7.83 -51.93 -0.41 0.13 16 46 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16 47 H 0.05 0.91 6.15 -51.93 -0.32 0.59 16 48 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 49 H 0.10 1.68 7.07 -51.93 -0.37 1.32 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -37.76 385.73 -9.01 -46.77 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.24 Total: -0.19 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.01 Total: 11.69 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.71 Total: -56.04 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.83 Total: -25.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.76 -9.01 -46.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111542287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.107 kcal (2) G-P(sol) polarization free energy of solvation -37.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds