Wall clock time and date at job start Tue Mar 31 2020 23:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 120.00231 * 2 1 4 4 O 1.21284 * 119.99920 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.50698 * 109.46970 * 180.02562 * 5 3 2 7 7 O 1.21283 * 120.00298 * 359.97438 * 6 5 3 8 8 N 1.34785 * 119.99844 * 179.97438 * 6 5 3 9 9 C 1.47153 * 120.98924 * 359.97438 * 8 6 5 10 10 C 1.53296 * 108.37670 * 129.42611 * 9 8 6 11 11 H 1.09000 * 109.51602 * 292.41847 * 10 9 8 12 12 C 1.53004 * 109.51244 * 172.26408 * 10 9 8 13 13 O 1.42971 * 109.23093 * 52.34062 * 10 9 8 14 14 C 1.42891 * 114.20178 * 297.51237 * 13 10 9 15 15 C 1.52994 * 109.55377 * 182.24522 * 14 13 10 16 16 C 1.53183 * 109.35326 * 59.06338 * 15 14 13 17 17 N 1.46938 * 108.77143 * 54.58173 * 16 15 14 18 18 C 1.36932 * 120.64187 * 126.30169 * 17 16 15 19 19 H 1.08004 * 120.00068 * 331.85002 * 18 17 16 20 20 C 1.38808 * 120.00420 * 151.86005 * 18 17 16 21 21 N 1.31629 * 119.99741 * 343.05470 * 20 18 17 22 22 Si 1.86795 * 120.00578 * 163.05579 * 20 18 17 23 23 H 1.48498 * 109.47306 * 89.99927 * 22 20 18 24 24 H 1.48501 * 109.47188 * 210.00099 * 22 20 18 25 25 H 1.48502 * 109.47252 * 329.99946 * 22 20 18 26 26 C 1.46916 * 118.71179 * 306.31703 * 17 16 15 27 27 C 1.52991 * 109.56355 * 302.55481 * 14 13 10 28 28 C 1.47159 * 120.98750 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47180 * 59.99312 * 1 2 3 30 30 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46891 * 300.00040 * 1 2 3 32 32 H 0.97001 * 119.99330 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.47031 * 60.00404 * 5 3 2 34 34 H 1.08997 * 109.47120 * 299.99870 * 5 3 2 35 35 H 1.09000 * 109.68423 * 249.14805 * 9 8 6 36 36 H 1.08997 * 109.68145 * 9.70818 * 9 8 6 37 37 H 1.08999 * 109.46433 * 60.00214 * 12 10 9 38 38 H 1.09002 * 109.47262 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47048 * 300.00685 * 12 10 9 40 40 H 1.09002 * 109.48955 * 179.02844 * 15 14 13 41 41 H 1.08998 * 109.48836 * 299.09464 * 15 14 13 42 42 H 1.09002 * 109.58761 * 294.79777 * 16 15 14 43 43 H 1.09006 * 109.70608 * 174.43843 * 16 15 14 44 44 H 0.96995 * 120.00236 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58816 * 293.88270 * 26 17 16 46 46 H 1.09003 * 109.70174 * 173.53302 * 26 17 16 47 47 H 1.08997 * 109.49186 * 60.89372 * 27 14 13 48 48 H 1.09004 * 109.48698 * 180.94379 * 27 14 13 49 49 H 1.08994 * 109.68017 * 350.19930 * 28 8 6 50 50 H 1.08997 * 109.67384 * 110.71220 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1483 2.5879 0.0011 7 8 3.3602 3.5098 0.0005 8 7 5.4734 2.8341 0.0022 9 6 6.4488 1.7323 0.0035 10 6 7.4619 1.9824 -1.1195 11 1 6.9662 1.8857 -2.0854 12 6 8.5962 0.9602 -1.0214 13 8 7.9957 3.3021 -0.9868 14 6 7.0251 4.3425 -1.1182 15 6 7.7161 5.7035 -1.0149 16 6 8.7725 5.8215 -2.1179 17 7 8.1318 5.5664 -3.4154 18 6 8.2453 6.4686 -4.4392 19 1 8.3835 7.5175 -4.2219 20 6 8.1825 6.0352 -5.7564 21 7 8.3494 4.7604 -6.0385 22 14 7.8613 7.2610 -7.1288 23 1 9.1538 7.7960 -7.6272 24 1 7.1445 6.5842 -8.2393 25 1 7.0303 8.3775 -6.6109 26 6 7.3669 4.3247 -3.5928 27 6 6.3257 4.2226 -2.4736 28 6 5.9878 4.2129 0.0033 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9499 -0.8401 0.0004 33 1 4.0096 0.6531 -0.8891 34 1 4.0089 0.6535 0.8908 35 1 6.9648 1.6999 0.9630 36 1 5.9348 0.7868 -0.1697 37 1 8.1880 -0.0457 -1.1183 38 1 9.3160 1.1384 -1.8204 39 1 9.0924 1.0596 -0.0561 40 1 6.9774 6.4964 -1.1324 41 1 8.1959 5.7947 -0.0404 42 1 9.5607 5.0878 -1.9490 43 1 9.1995 6.8245 -2.1121 44 1 8.3052 4.4574 -6.9588 45 1 8.0413 3.4698 -3.5435 46 1 6.8638 4.3379 -4.5597 47 1 5.8172 3.2606 -2.5366 48 1 5.5975 5.0267 -2.5795 49 1 5.1688 4.9104 -0.1717 50 1 6.4555 4.4293 0.9637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111542287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:18 Heat of formation + Delta-G solvation = -105.670898 kcal Electronic energy + Delta-G solvation = -31862.901259 eV Core-core repulsion = 27697.242333 eV Total energy + Delta-G solvation = -4165.658925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95025 -40.85046 -39.42745 -37.92215 -35.81864 -35.43644 -35.11802 -33.23507 -32.13723 -31.76737 -31.10418 -28.69151 -27.39937 -27.05765 -25.68877 -24.19410 -23.19318 -22.34560 -21.66329 -20.55566 -20.06719 -18.89263 -18.64499 -17.93877 -17.19506 -17.01545 -16.88370 -16.83457 -16.30897 -16.22847 -15.79747 -15.69173 -15.28872 -15.02307 -14.89474 -14.64263 -14.56275 -14.42228 -13.93575 -13.79019 -13.36457 -13.29681 -13.10455 -13.06597 -13.04941 -12.93993 -12.83452 -12.78780 -12.61225 -12.53137 -12.27353 -12.01683 -11.89237 -11.73500 -11.43958 -11.31917 -10.97566 -10.76289 -10.54553 -10.50360 -10.09518 -9.46050 -8.66687 -7.88588 -5.33211 1.43426 1.45408 1.55080 1.57233 1.69059 1.73525 2.42310 2.49297 2.74673 3.25746 3.34587 3.59243 3.71488 3.81143 3.88646 3.93794 3.99518 4.17276 4.28003 4.31580 4.32922 4.42771 4.47171 4.47794 4.57323 4.62682 4.65136 4.69160 4.72316 4.82343 4.85561 4.94773 4.96465 4.99116 5.06699 5.14622 5.19953 5.34469 5.36035 5.42490 5.46500 5.47424 5.62946 5.70641 6.34655 6.37183 6.42222 6.60881 7.14001 7.16578 7.38396 7.85742 8.38629 9.17845 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.003271 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.900802 B = 8557.465103 C = 9446.442933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.721 5.721 3 C 0.501 3.499 4 O -0.561 6.561 5 C -0.153 4.153 6 C 0.505 3.495 7 O -0.556 6.556 8 N -0.613 5.613 9 C 0.082 3.918 10 C 0.057 3.943 11 H 0.045 0.955 12 C -0.134 4.134 13 O -0.373 6.373 14 C 0.128 3.872 15 C -0.111 4.111 16 C 0.150 3.850 17 N -0.610 5.610 18 C -0.263 4.263 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.197 3.803 27 C -0.144 4.144 28 C 0.099 3.901 29 H 0.039 0.961 30 H 0.116 0.884 31 H 0.045 0.955 32 H 0.423 0.577 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.018 0.982 43 H 0.054 0.946 44 H 0.249 0.751 45 H 0.001 0.999 46 H 0.043 0.957 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -18.453 17.237 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.376 5.376 3 C 0.286 3.714 4 O -0.438 6.438 5 C -0.195 4.195 6 C 0.293 3.707 7 O -0.433 6.433 8 N -0.348 5.348 9 C -0.040 4.040 10 C -0.001 4.001 11 H 0.063 0.937 12 C -0.191 4.191 13 O -0.292 6.292 14 C 0.088 3.912 15 C -0.150 4.150 16 C 0.025 3.975 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.208 1.208 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.071 3.929 27 C -0.183 4.183 28 C -0.024 4.024 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.260 0.740 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.118 0.882 36 H 0.152 0.848 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.614 -17.242 17.129 25.469 hybrid contribution -0.183 0.569 -1.439 1.558 sum -7.797 -16.673 15.690 24.186 Atomic orbital electron populations 1.21616 0.79234 1.04196 1.00888 1.45643 1.08058 1.08364 1.75491 1.20632 0.90501 0.83967 0.76293 1.90871 1.70853 1.33107 1.48958 1.21705 0.92650 0.94857 1.10311 1.20823 0.81512 0.92260 0.76130 1.90846 1.55272 1.47693 1.49480 1.48237 1.05519 1.07463 1.73550 1.22785 0.90364 0.90455 1.00376 1.22708 0.96158 0.83781 0.97482 0.93692 1.21699 0.96856 0.97611 1.02946 1.87987 1.34404 1.14183 1.92663 1.21482 0.88333 0.89032 0.92386 1.21886 0.99217 0.93747 1.00159 1.20889 0.93363 0.98317 0.84938 1.44285 1.57831 1.21247 1.09944 1.19515 1.44408 0.89318 0.86128 0.91679 1.25790 1.01439 0.97742 0.99703 1.70187 1.54073 1.15523 1.18134 0.85314 0.77858 0.78606 0.78915 1.20775 1.21850 1.19881 1.20282 0.90698 0.86883 0.95026 1.22457 0.98559 1.00078 0.97223 1.22152 0.96900 0.84242 0.99147 0.94171 0.86561 0.93644 0.73974 0.82512 0.81229 0.88228 0.84841 0.87628 0.93915 0.90614 0.91342 0.88967 0.96355 0.92748 0.94182 0.98059 0.93816 0.92419 0.94004 0.90907 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.70 127.77 1.37 2.41 16 2 N -0.72 -8.70 5.71 -484.52 -2.77 -11.46 16 3 C 0.50 10.94 7.82 87.66 0.69 11.62 16 4 O -0.56 -20.35 14.18 20.40 0.29 -20.06 16 5 C -0.15 -2.19 4.56 29.10 0.13 -2.06 16 6 C 0.50 13.72 7.71 87.66 0.68 14.40 16 7 O -0.56 -22.30 13.65 20.40 0.28 -22.02 16 8 N -0.61 -14.87 2.52 -817.31 -2.06 -16.93 16 9 C 0.08 1.27 5.83 86.35 0.50 1.77 16 10 C 0.06 1.34 3.02 30.69 0.09 1.43 16 11 H 0.05 1.27 6.29 -2.39 -0.02 1.26 16 12 C -0.13 -2.37 9.57 71.98 0.69 -1.68 16 13 O -0.37 -11.99 8.65 -148.98 -1.29 -13.28 16 14 C 0.13 4.37 0.68 -10.70 -0.01 4.36 16 15 C -0.11 -3.90 5.10 30.65 0.16 -3.74 16 16 C 0.15 6.55 6.28 86.36 0.54 7.09 16 17 N -0.61 -32.18 2.99 -699.09 -2.09 -34.27 16 18 C -0.26 -15.14 9.58 84.03 0.81 -14.34 16 19 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 20 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 21 N -0.93 -56.76 11.19 21.65 0.24 -56.52 16 22 Si 0.97 46.59 29.59 68.60 2.03 48.62 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 26 C 0.20 10.02 5.07 86.37 0.44 10.46 16 27 C -0.14 -5.95 4.33 30.66 0.13 -5.82 16 28 C 0.10 2.93 5.30 86.36 0.46 3.38 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.42 1.11 8.83 -92.71 -0.82 0.30 16 33 H 0.16 1.16 7.66 -2.39 -0.02 1.15 16 34 H 0.17 0.73 8.01 -2.39 -0.02 0.71 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.13 0.82 6.05 -2.39 -0.01 0.81 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.02 0.83 7.83 -2.39 -0.02 0.81 16 43 H 0.05 2.30 7.93 -2.38 -0.02 2.28 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.00 0.07 7.83 -2.39 -0.02 0.05 16 46 H 0.04 2.55 6.06 -2.39 -0.01 2.53 16 47 H 0.06 2.23 6.15 -2.39 -0.01 2.22 16 48 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 49 H 0.07 2.55 7.07 -2.39 -0.02 2.54 16 50 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -91.60 385.73 1.85 -89.75 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.13 Total: 9.47 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 7.09 Total: 26.72 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -6.68 Total: -119.19 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.72 Total: -55.37 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -91.60 1.85 -89.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111542287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.920 kcal (2) G-P(sol) polarization free energy of solvation -91.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds