Wall clock time and date at job start Tue Mar 31 2020 23:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.48793 * 2 1 4 4 O 1.42900 * 109.48056 * 120.02680 * 2 1 3 5 5 C 1.42912 * 114.09675 * 181.14318 * 4 2 1 6 6 C 1.53087 * 109.41214 * 298.84404 * 5 4 2 7 7 C 1.53175 * 109.16623 * 57.60906 * 6 5 4 8 8 C 1.53088 * 109.48289 * 239.97512 * 2 1 3 9 9 H 1.09004 * 109.57209 * 302.34370 * 8 2 1 10 10 C 1.50699 * 109.52585 * 62.49670 * 8 2 1 11 11 O 1.21285 * 119.99493 * 25.91888 * 10 8 2 12 12 N 1.34777 * 120.00366 * 205.91674 * 10 8 2 13 13 C 1.47073 * 120.88206 * 174.78697 * 12 10 8 14 14 C 1.53234 * 108.52593 * 231.20986 * 13 12 10 15 15 N 1.46900 * 109.33793 * 306.17359 * 14 13 12 16 16 C 1.46898 * 111.00201 * 187.24935 * 15 14 13 17 17 C 1.50703 * 109.47684 * 169.99817 * 16 15 14 18 18 O 1.21296 * 119.99286 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00165 * 180.27597 * 17 16 15 20 20 C 1.37097 * 119.99463 * 179.72552 * 19 17 16 21 21 H 1.08002 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99649 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00118 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47176 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47614 * 119.99821 * 24 22 20 27 27 H 1.48507 * 109.47108 * 239.99721 * 24 22 20 28 28 C 1.46903 * 111.26978 * 63.10404 * 15 14 13 29 29 C 1.47073 * 120.87953 * 354.81613 * 12 10 8 30 30 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47433 * 300.02605 * 1 2 3 32 32 H 1.08999 * 109.47583 * 60.03217 * 1 2 3 33 33 H 1.08995 * 109.47565 * 178.85952 * 5 4 2 34 34 H 1.08997 * 109.49015 * 58.83223 * 5 4 2 35 35 H 1.09005 * 109.52239 * 297.69833 * 6 5 4 36 36 H 1.09001 * 109.51955 * 177.51444 * 6 5 4 37 37 H 1.09002 * 109.54356 * 183.14941 * 7 6 5 38 38 H 1.08999 * 109.53930 * 62.88584 * 7 6 5 39 39 H 1.09005 * 109.62276 * 111.50030 * 13 12 10 40 40 H 1.09000 * 109.63067 * 350.92758 * 13 12 10 41 41 H 1.08998 * 109.49796 * 186.21686 * 14 13 12 42 42 H 1.09002 * 109.49418 * 66.12919 * 14 13 12 43 43 H 1.09004 * 109.46779 * 50.00216 * 16 15 14 44 44 H 1.08995 * 109.47640 * 290.00265 * 16 15 14 45 45 H 0.96992 * 119.99866 * 359.72804 * 19 17 16 46 46 H 0.97003 * 120.00417 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.49424 * 56.85456 * 28 15 14 48 48 H 1.09004 * 109.49288 * 176.93520 * 28 15 14 49 49 H 1.09001 * 109.63157 * 248.50602 * 29 12 10 50 50 H 1.09003 * 109.62938 * 8.88514 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0065 -0.6741 1.1664 5 6 3.4307 -0.7092 1.2791 6 6 4.0176 -1.4599 0.0809 7 6 3.5711 -0.7707 -1.2121 8 6 2.0405 -0.7222 -1.2496 9 1 1.6443 -1.7374 -1.2721 10 6 1.5902 0.0215 -2.4805 11 8 1.3584 1.2105 -2.4197 12 7 1.4449 -0.6345 -3.6488 13 6 0.8987 0.0450 -4.8333 14 6 -0.2400 -0.8081 -5.4021 15 7 0.2468 -2.1738 -5.6387 16 6 -0.7615 -2.9775 -6.3424 17 6 -0.1467 -4.2807 -6.7838 18 8 1.0170 -4.5168 -6.5360 19 7 -0.8884 -5.1815 -7.4582 20 6 -0.3274 -6.3646 -7.8646 21 1 0.7087 -6.5750 -7.6440 22 6 -1.0919 -7.2932 -8.5603 23 7 -2.3527 -7.0375 -8.8283 24 14 -0.3279 -8.9055 -9.1135 25 1 1.0950 -8.9499 -8.6905 26 1 -1.0634 -10.0390 -8.4975 27 1 -0.4075 -9.0092 -10.5928 28 6 0.6526 -2.8199 -4.3834 29 6 1.8279 -2.0491 -3.7729 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5133 -0.8902 33 1 3.7099 -1.2202 2.2005 34 1 3.8194 0.3090 1.2959 35 1 3.6613 -2.4901 0.0864 36 1 5.1058 -1.4496 0.1421 37 1 3.9392 -1.3325 -2.0706 38 1 3.9689 0.2436 -1.2407 39 1 1.6813 0.1585 -5.5836 40 1 0.5154 1.0250 -4.5490 41 1 -0.5833 -0.3764 -6.3422 42 1 -1.0653 -0.8343 -4.6905 43 1 -1.1182 -2.4302 -7.2150 44 1 -1.5978 -3.1787 -5.6729 45 1 -1.8190 -4.9928 -7.6560 46 1 -2.8864 -7.6855 -9.3143 47 1 -0.1851 -2.8180 -3.6860 48 1 0.9565 -3.8471 -4.5847 49 1 2.6998 -2.1369 -4.4212 50 1 2.0621 -2.4528 -2.7878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112802810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:09 Heat of formation + Delta-G solvation = -109.243094 kcal Electronic energy + Delta-G solvation = -30753.905487 eV Core-core repulsion = 26588.091660 eV Total energy + Delta-G solvation = -4165.813827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94655 -39.35024 -38.48970 -37.26492 -34.67759 -34.06541 -33.70527 -33.01067 -31.31336 -31.10727 -29.07806 -28.11656 -25.95993 -25.02087 -23.85429 -23.75989 -22.62886 -21.57750 -20.43178 -19.32375 -18.95621 -17.95366 -17.58022 -16.63449 -16.28877 -16.01474 -15.68603 -15.43150 -15.13593 -15.05778 -14.84534 -14.57687 -14.31418 -14.22625 -13.89462 -13.68824 -13.65261 -13.29082 -12.96926 -12.85247 -12.58106 -12.41927 -12.26261 -12.00088 -11.75134 -11.61987 -11.56545 -11.42836 -11.37267 -11.22952 -11.18757 -11.10179 -10.86778 -10.63362 -10.37768 -10.26863 -9.91395 -9.63567 -9.53020 -8.91459 -8.42554 -8.03587 -7.94125 -6.46219 -3.87196 2.44260 2.79418 3.12946 3.24108 3.30677 3.48674 3.83050 3.89601 4.18617 4.21002 4.32921 4.44457 4.54241 4.68830 4.78748 4.90726 4.95967 5.00189 5.03355 5.15711 5.18668 5.20356 5.21508 5.30043 5.37015 5.39095 5.44364 5.46330 5.48937 5.56187 5.66902 5.70550 5.73126 5.76087 5.81572 5.85190 5.91992 5.99328 6.08480 6.12948 6.20765 6.42561 6.92757 7.08171 7.25125 7.32463 7.51070 8.00910 8.01581 8.56284 9.13318 9.49334 10.00264 10.71458 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002345 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.857148 B =11935.487168 C =12666.691998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.107 3.893 3 H 0.071 0.929 4 O -0.377 6.377 5 C 0.059 3.941 6 C -0.154 4.154 7 C -0.113 4.113 8 C -0.141 4.141 9 H 0.103 0.897 10 C 0.526 3.474 11 O -0.547 6.547 12 N -0.609 5.609 13 C 0.119 3.881 14 C 0.040 3.960 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.579 6.579 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.038 3.962 29 C 0.112 3.888 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.035 0.965 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.027 0.973 48 H 0.117 0.883 49 H 0.083 0.917 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.527 13.463 15.724 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.049 3.951 3 H 0.089 0.911 4 O -0.296 6.296 5 C -0.018 4.018 6 C -0.192 4.192 7 C -0.151 4.151 8 C -0.162 4.162 9 H 0.121 0.879 10 C 0.314 3.686 11 O -0.425 6.425 12 N -0.342 5.342 13 C -0.004 4.004 14 C -0.088 4.088 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.463 6.463 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.090 4.090 29 C -0.011 4.011 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.134 0.866 49 H 0.101 0.899 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.332 13.760 15.647 22.089 hybrid contribution -0.877 -0.844 -0.365 1.271 sum 6.454 12.917 15.281 21.024 Atomic orbital electron populations 1.21809 0.92700 1.02787 1.03100 1.21828 0.95327 0.95028 0.82899 0.91120 1.87960 1.20980 1.78180 1.42485 1.22598 0.81162 0.99686 0.98375 1.22199 1.01456 1.00768 0.94784 1.21567 0.92514 1.02072 0.98904 1.22048 0.98207 1.01820 0.94142 0.87945 1.20336 0.76966 0.87284 0.83985 1.90670 1.51578 1.15042 1.85197 1.48262 1.62953 1.12518 1.10431 1.21702 0.96281 0.95978 0.86442 1.22513 0.95733 0.90068 1.00532 1.61502 1.39473 1.00994 1.21915 1.21856 0.92856 0.94964 0.98813 1.19703 0.87571 0.85504 0.84374 1.90474 1.16951 1.78841 1.60080 1.41881 1.12919 1.16110 1.49011 1.19740 0.97935 0.92809 1.32332 0.87816 1.25273 0.95423 0.99960 0.97299 1.69617 1.06842 1.36879 1.40874 0.85805 0.79295 0.81026 0.78245 1.19196 1.20761 1.20735 1.22651 0.96066 1.01067 0.89228 1.21989 0.98590 0.79153 1.01378 0.91985 0.91572 0.90566 0.88665 0.93108 0.90535 0.90270 0.90506 0.91047 0.90571 0.88910 0.89446 0.94714 0.89159 0.93431 0.77481 0.91879 0.95441 0.86555 0.89892 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.32 37.15 0.35 -1.18 16 2 C 0.11 1.14 2.42 -26.69 -0.06 1.08 16 3 H 0.07 0.81 7.78 -51.92 -0.40 0.41 16 4 O -0.38 -3.99 10.41 -35.23 -0.37 -4.35 16 5 C 0.06 0.45 6.84 37.20 0.25 0.71 16 6 C -0.15 -1.10 6.14 -26.60 -0.16 -1.27 16 7 C -0.11 -0.97 5.17 -26.55 -0.14 -1.11 16 8 C -0.14 -1.44 1.37 -91.64 -0.13 -1.57 16 9 H 0.10 1.02 6.41 -51.93 -0.33 0.69 16 10 C 0.53 6.55 6.00 -10.99 -0.07 6.49 16 11 O -0.55 -8.21 14.70 5.55 0.08 -8.13 16 12 N -0.61 -7.46 3.01 -172.47 -0.52 -7.98 16 13 C 0.12 1.43 6.58 -3.61 -0.02 1.41 16 14 C 0.04 0.50 5.62 -3.70 -0.02 0.48 16 15 N -0.51 -7.98 4.37 -235.76 -1.03 -9.01 16 16 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 17 C 0.44 9.91 7.44 -10.99 -0.08 9.82 16 18 O -0.58 -14.62 13.91 5.54 0.08 -14.54 16 19 N -0.56 -13.75 5.29 -10.96 -0.06 -13.80 16 20 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 24 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.04 0.57 5.26 -3.70 -0.02 0.55 16 29 C 0.11 1.35 6.11 -3.61 -0.02 1.33 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.87 6.70 -51.93 -0.35 0.52 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.64 7.55 -51.93 -0.39 0.24 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 41 H 0.09 0.96 7.99 -51.93 -0.41 0.55 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.38 7.97 -51.93 -0.41 0.96 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 45 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.12 2.08 5.76 -51.93 -0.30 1.78 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.09 0.87 5.23 -51.93 -0.27 0.59 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -31.40 388.05 -8.81 -40.21 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.15 Total: 9.74 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.39 Total: 9.77 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.88 Total: -54.11 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.21 Total: -27.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.40 -8.81 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112802810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.032 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds