Wall clock time and date at job start Tue Mar 31 2020 23:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.48793 * 2 1 4 4 O 1.42900 * 109.48056 * 120.02680 * 2 1 3 5 5 C 1.42912 * 114.09675 * 181.14318 * 4 2 1 6 6 C 1.53087 * 109.41214 * 298.84404 * 5 4 2 7 7 C 1.53175 * 109.16623 * 57.60906 * 6 5 4 8 8 C 1.53088 * 109.48289 * 239.97512 * 2 1 3 9 9 H 1.09004 * 109.57209 * 302.34370 * 8 2 1 10 10 C 1.50699 * 109.52585 * 62.49670 * 8 2 1 11 11 O 1.21285 * 119.99493 * 25.91888 * 10 8 2 12 12 N 1.34777 * 120.00366 * 205.91674 * 10 8 2 13 13 C 1.47073 * 120.88206 * 174.78697 * 12 10 8 14 14 C 1.53234 * 108.52593 * 231.20986 * 13 12 10 15 15 N 1.46900 * 109.33793 * 306.17359 * 14 13 12 16 16 C 1.46898 * 111.00201 * 187.24935 * 15 14 13 17 17 C 1.50703 * 109.47684 * 169.99817 * 16 15 14 18 18 O 1.21296 * 119.99286 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00165 * 180.27597 * 17 16 15 20 20 C 1.37097 * 119.99463 * 179.72552 * 19 17 16 21 21 H 1.08002 * 120.00618 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99649 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00118 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47176 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47614 * 119.99821 * 24 22 20 27 27 H 1.48507 * 109.47108 * 239.99721 * 24 22 20 28 28 C 1.46903 * 111.26978 * 63.10404 * 15 14 13 29 29 C 1.47073 * 120.87953 * 354.81613 * 12 10 8 30 30 H 1.08996 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47433 * 300.02605 * 1 2 3 32 32 H 1.08999 * 109.47583 * 60.03217 * 1 2 3 33 33 H 1.08995 * 109.47565 * 178.85952 * 5 4 2 34 34 H 1.08997 * 109.49015 * 58.83223 * 5 4 2 35 35 H 1.09005 * 109.52239 * 297.69833 * 6 5 4 36 36 H 1.09001 * 109.51955 * 177.51444 * 6 5 4 37 37 H 1.09002 * 109.54356 * 183.14941 * 7 6 5 38 38 H 1.08999 * 109.53930 * 62.88584 * 7 6 5 39 39 H 1.09005 * 109.62276 * 111.50030 * 13 12 10 40 40 H 1.09000 * 109.63067 * 350.92758 * 13 12 10 41 41 H 1.08998 * 109.49796 * 186.21686 * 14 13 12 42 42 H 1.09002 * 109.49418 * 66.12919 * 14 13 12 43 43 H 1.09004 * 109.46779 * 50.00216 * 16 15 14 44 44 H 1.08995 * 109.47640 * 290.00265 * 16 15 14 45 45 H 0.96992 * 119.99866 * 359.72804 * 19 17 16 46 46 H 0.97003 * 120.00417 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.49424 * 56.85456 * 28 15 14 48 48 H 1.09004 * 109.49288 * 176.93520 * 28 15 14 49 49 H 1.09001 * 109.63157 * 248.50602 * 29 12 10 50 50 H 1.09003 * 109.62938 * 8.88514 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0065 -0.6741 1.1664 5 6 3.4307 -0.7092 1.2791 6 6 4.0176 -1.4599 0.0809 7 6 3.5711 -0.7707 -1.2121 8 6 2.0405 -0.7222 -1.2496 9 1 1.6443 -1.7374 -1.2721 10 6 1.5902 0.0215 -2.4805 11 8 1.3584 1.2105 -2.4197 12 7 1.4449 -0.6345 -3.6488 13 6 0.8987 0.0450 -4.8333 14 6 -0.2400 -0.8081 -5.4021 15 7 0.2468 -2.1738 -5.6387 16 6 -0.7615 -2.9775 -6.3424 17 6 -0.1467 -4.2807 -6.7838 18 8 1.0170 -4.5168 -6.5360 19 7 -0.8884 -5.1815 -7.4582 20 6 -0.3274 -6.3646 -7.8646 21 1 0.7087 -6.5750 -7.6440 22 6 -1.0919 -7.2932 -8.5603 23 7 -2.3527 -7.0375 -8.8283 24 14 -0.3279 -8.9055 -9.1135 25 1 1.0950 -8.9499 -8.6905 26 1 -1.0634 -10.0390 -8.4975 27 1 -0.4075 -9.0092 -10.5928 28 6 0.6526 -2.8199 -4.3834 29 6 1.8279 -2.0491 -3.7729 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5133 -0.8902 33 1 3.7099 -1.2202 2.2005 34 1 3.8194 0.3090 1.2959 35 1 3.6613 -2.4901 0.0864 36 1 5.1058 -1.4496 0.1421 37 1 3.9392 -1.3325 -2.0706 38 1 3.9689 0.2436 -1.2407 39 1 1.6813 0.1585 -5.5836 40 1 0.5154 1.0250 -4.5490 41 1 -0.5833 -0.3764 -6.3422 42 1 -1.0653 -0.8343 -4.6905 43 1 -1.1182 -2.4302 -7.2150 44 1 -1.5978 -3.1787 -5.6729 45 1 -1.8190 -4.9928 -7.6560 46 1 -2.8864 -7.6855 -9.3143 47 1 -0.1851 -2.8180 -3.6860 48 1 0.9565 -3.8471 -4.5847 49 1 2.6998 -2.1369 -4.4212 50 1 2.0621 -2.4528 -2.7878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112802810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:08 Heat of formation + Delta-G solvation = -131.524261 kcal Electronic energy + Delta-G solvation = -30754.871671 eV Core-core repulsion = 26588.091660 eV Total energy + Delta-G solvation = -4166.780011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88111 -40.54761 -39.75481 -38.56858 -36.07700 -35.52781 -34.71479 -33.75536 -33.25316 -32.15155 -30.30794 -28.98876 -27.39926 -26.06646 -25.24701 -24.78784 -23.48352 -22.46285 -21.29850 -21.03400 -19.99699 -19.82782 -18.57019 -17.81233 -17.42632 -17.06331 -16.66351 -16.59092 -16.37827 -16.21097 -16.09900 -15.82236 -15.44689 -15.38902 -15.28628 -15.00059 -14.81779 -14.13876 -14.11279 -13.90715 -13.59846 -13.49733 -13.24207 -13.20460 -13.15930 -12.95601 -12.79667 -12.49706 -12.41152 -12.37194 -12.28797 -12.15853 -12.09125 -12.03527 -11.90327 -11.43641 -11.34938 -10.81530 -10.44812 -10.33303 -9.98817 -9.79711 -9.23257 -8.44876 -5.92938 1.37683 1.43397 1.46743 1.56963 1.82905 2.07406 2.29212 2.69341 2.77272 3.22506 3.36276 3.37576 3.51952 3.69258 3.81647 3.91088 3.97888 4.05606 4.09193 4.14673 4.21070 4.26435 4.30461 4.38935 4.45043 4.47049 4.51288 4.55507 4.60216 4.68875 4.71537 4.74140 4.80601 4.83002 4.89748 4.91040 5.00904 5.04997 5.05186 5.17633 5.26539 5.38393 5.43537 5.80930 6.04346 6.12617 6.20676 6.32072 6.62379 7.02363 7.15249 7.59107 8.13991 8.72764 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002345 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.857148 B =11935.487168 C =12666.691998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.110 3.890 3 H 0.059 0.941 4 O -0.391 6.391 5 C 0.050 3.950 6 C -0.149 4.149 7 C -0.112 4.112 8 C -0.136 4.136 9 H 0.108 0.892 10 C 0.527 3.473 11 O -0.574 6.574 12 N -0.608 5.608 13 C 0.119 3.881 14 C 0.046 3.954 15 N -0.530 5.530 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.327 4.327 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.273 1.273 28 C 0.041 3.959 29 C 0.121 3.879 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.034 0.966 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 13.581 16.394 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.051 3.949 3 H 0.077 0.923 4 O -0.310 6.310 5 C -0.026 4.026 6 C -0.186 4.186 7 C -0.150 4.150 8 C -0.158 4.158 9 H 0.126 0.874 10 C 0.317 3.683 11 O -0.454 6.454 12 N -0.341 5.341 13 C -0.004 4.004 14 C -0.082 4.082 15 N -0.255 5.255 16 C -0.073 4.073 17 C 0.231 3.769 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.199 1.199 28 C -0.088 4.088 29 C -0.001 4.001 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.622 13.892 16.322 22.748 hybrid contribution -0.930 -0.805 -0.523 1.337 sum 6.692 13.087 15.799 21.579 Atomic orbital electron populations 1.21772 0.92791 1.02835 1.02786 1.21732 0.95353 0.94510 0.83273 0.92295 1.87941 1.22738 1.78089 1.42253 1.22837 0.79787 1.00413 0.99527 1.22183 1.02626 1.00353 0.93463 1.21595 0.91164 1.02136 1.00093 1.22046 0.99403 1.01503 0.92823 0.87414 1.20680 0.76224 0.86994 0.84416 1.90659 1.52799 1.16303 1.85598 1.48301 1.62775 1.12430 1.10585 1.21711 0.96231 0.96012 0.86406 1.22548 0.95846 0.88139 1.01664 1.61481 1.39532 1.02129 1.22373 1.21726 0.93060 0.92325 1.00179 1.20678 0.87090 0.86618 0.82501 1.90456 1.18570 1.79839 1.60723 1.41952 1.13208 1.16131 1.50013 1.19683 0.97396 0.94612 1.33989 0.90099 1.26017 0.95835 1.02659 0.96899 1.69678 1.07583 1.37945 1.41152 0.84894 0.78221 0.77330 0.78058 1.19603 1.19789 1.19869 1.22534 0.97194 0.99717 0.89313 1.21895 0.97091 0.78893 1.02237 0.91694 0.91000 0.91768 0.86867 0.92675 0.90438 0.88300 0.90039 0.91556 0.90571 0.88623 0.87647 0.94223 0.86987 0.91716 0.77124 0.91423 0.94736 0.89830 0.90586 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.32 71.98 0.67 -2.23 16 2 C 0.11 2.24 2.42 30.62 0.07 2.31 16 3 H 0.06 1.33 7.78 -2.38 -0.02 1.31 16 4 O -0.39 -7.71 10.41 -148.98 -1.55 -9.26 16 5 C 0.05 0.68 6.84 72.01 0.49 1.18 16 6 C -0.15 -1.79 6.14 30.68 0.19 -1.60 16 7 C -0.11 -1.75 5.17 30.71 0.16 -1.59 16 8 C -0.14 -2.62 1.37 -11.45 -0.02 -2.63 16 9 H 0.11 1.95 6.41 -2.38 -0.02 1.94 16 10 C 0.53 12.60 6.00 87.66 0.53 13.13 16 11 O -0.57 -16.89 14.70 -3.04 -0.04 -16.94 16 12 N -0.61 -14.16 3.01 -817.96 -2.46 -16.62 16 13 C 0.12 2.70 6.58 86.35 0.57 3.27 16 14 C 0.05 1.05 5.62 86.38 0.49 1.54 16 15 N -0.53 -15.77 4.37 -899.82 -3.93 -19.70 16 16 C 0.06 1.88 5.45 85.56 0.47 2.35 16 17 C 0.44 19.95 7.44 87.66 0.65 20.61 16 18 O -0.61 -31.41 13.91 -3.08 -0.04 -31.45 16 19 N -0.58 -28.47 5.29 -306.98 -1.62 -30.09 16 20 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 24 Si 0.99 42.10 29.55 68.60 2.03 44.13 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 C 0.04 1.18 5.26 86.38 0.45 1.64 16 29 C 0.12 2.81 6.11 86.35 0.53 3.34 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.44 6.70 -2.39 -0.02 1.42 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.20 7.55 -2.39 -0.02 1.18 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.10 2.16 7.10 -2.39 -0.02 2.14 16 41 H 0.11 2.04 7.99 -2.39 -0.02 2.02 16 42 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 3.17 7.97 -2.38 -0.02 3.15 16 44 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 45 H 0.40 18.70 7.90 -92.71 -0.73 17.96 16 46 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 47 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 3.02 5.76 -2.38 -0.01 3.00 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.11 2.00 5.23 -2.39 -0.01 1.99 16 Total: -1.00 -67.82 388.05 -0.60 -68.42 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.22 Total: 36.47 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 6.53 Total: 23.80 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -7.73 Total: -115.17 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -1.64 Total: -57.65 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.82 -0.60 -68.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112802810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.107 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds