Wall clock time and date at job start Tue Mar 31 2020 23:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49142 * 2 1 4 4 O 1.42904 * 109.47925 * 239.97517 * 2 1 3 5 5 C 1.42906 * 114.09694 * 178.86062 * 4 2 1 6 6 C 1.53088 * 109.41772 * 61.15395 * 5 4 2 7 7 C 1.53177 * 109.16581 * 302.39321 * 6 5 4 8 8 C 1.53084 * 109.48372 * 120.02681 * 2 1 3 9 9 H 1.09006 * 109.57176 * 57.65542 * 8 2 1 10 10 C 1.50697 * 109.52561 * 297.49702 * 8 2 1 11 11 O 1.21279 * 119.99756 * 337.36482 * 10 8 2 12 12 N 1.34782 * 119.99828 * 157.35590 * 10 8 2 13 13 C 1.47075 * 120.88457 * 355.01794 * 12 10 8 14 14 C 1.53242 * 108.52258 * 231.20594 * 13 12 10 15 15 N 1.46908 * 109.33861 * 306.17221 * 14 13 12 16 16 C 1.46900 * 110.99792 * 187.25318 * 15 14 13 17 17 C 1.50696 * 109.46984 * 169.99922 * 16 15 14 18 18 O 1.21291 * 119.99973 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00002 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99887 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00397 * 0.27405 * 20 19 17 22 22 C 1.38958 * 119.99615 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00344 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99547 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47422 * 60.00107 * 24 22 20 26 26 H 1.48504 * 109.47053 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47483 * 300.00187 * 24 22 20 28 28 C 1.46900 * 111.26764 * 63.10208 * 15 14 13 29 29 C 1.47078 * 120.87693 * 175.04032 * 12 10 8 30 30 H 1.09002 * 109.46997 * 299.97392 * 1 2 3 31 31 H 1.08996 * 109.46919 * 59.96902 * 1 2 3 32 32 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.48089 * 301.17084 * 5 4 2 34 34 H 1.09006 * 109.48811 * 181.14409 * 5 4 2 35 35 H 1.09002 * 109.52389 * 182.48552 * 6 5 4 36 36 H 1.09000 * 109.57716 * 62.32547 * 6 5 4 37 37 H 1.09008 * 109.53955 * 297.11364 * 7 6 5 38 38 H 1.08996 * 109.54749 * 176.84939 * 7 6 5 39 39 H 1.09002 * 109.62863 * 111.49696 * 13 12 10 40 40 H 1.09000 * 109.79047 * 351.01038 * 13 12 10 41 41 H 1.08994 * 109.49409 * 186.21212 * 14 13 12 42 42 H 1.09004 * 109.51177 * 66.14097 * 14 13 12 43 43 H 1.08997 * 109.46963 * 49.99962 * 16 15 14 44 44 H 1.09002 * 109.47095 * 289.99845 * 16 15 14 45 45 H 0.96996 * 119.99960 * 359.97438 * 19 17 16 46 46 H 0.97003 * 120.00025 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.49325 * 56.86053 * 28 15 14 48 48 H 1.08998 * 109.48712 * 176.93753 * 28 15 14 49 49 H 1.09001 * 109.63203 * 248.50571 * 29 12 10 50 50 H 1.09004 * 109.63325 * 8.88881 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0065 -0.6741 -1.1665 5 6 3.4307 -0.7093 -1.2791 6 6 4.0177 -1.4600 -0.0810 7 6 3.5712 -0.7709 1.2121 8 6 2.0406 -0.7222 1.2495 9 1 1.6444 -1.7374 1.2720 10 6 1.5904 0.0215 2.4804 11 8 1.3015 1.1971 2.4068 12 7 1.5086 -0.6198 3.6630 13 6 1.7486 -2.0680 3.7547 14 6 0.5738 -2.7098 4.5006 15 7 0.3848 -2.0287 5.7884 16 6 -0.6180 -2.7218 6.6082 17 6 -0.6094 -2.1497 8.0024 18 8 0.1570 -1.2533 8.2853 19 7 -1.4526 -2.6350 8.9351 20 6 -1.4444 -2.1149 10.2035 21 1 -0.7653 -1.3133 10.4542 22 6 -2.3142 -2.6148 11.1650 23 7 -3.1442 -3.5864 10.8586 24 14 -2.3035 -1.9057 12.8931 25 1 -2.6262 -0.4573 12.8359 26 1 -3.3168 -2.6067 13.7221 27 1 -0.9587 -2.0897 13.4955 28 6 0.0244 -0.6176 5.5970 29 6 1.1766 0.1099 4.8961 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 3.8193 0.3090 -1.2959 34 1 3.7101 -1.2202 -2.2006 35 1 5.1059 -1.4497 -0.1422 36 1 3.6623 -2.4905 -0.0859 37 1 3.9690 0.2436 1.2407 38 1 3.9393 -1.3327 2.0705 39 1 2.6736 -2.2520 4.3010 40 1 1.8234 -2.4937 2.7540 41 1 0.7862 -3.7646 4.6747 42 1 -0.3326 -2.6151 3.9025 43 1 -0.3811 -3.7849 6.6502 44 1 -1.6051 -2.5866 6.1661 45 1 -2.0652 -3.3521 8.7089 46 1 -3.7511 -3.9356 11.5299 47 1 -0.8742 -0.5516 4.9837 48 1 -0.1617 -0.1551 6.5664 49 1 2.0467 0.1353 5.5522 50 1 0.8745 1.1278 4.6492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112802811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:13 Heat of formation + Delta-G solvation = -108.214022 kcal Electronic energy + Delta-G solvation = -30600.360805 eV Core-core repulsion = 26434.591601 eV Total energy + Delta-G solvation = -4165.769203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95983 -39.36676 -38.47973 -37.27114 -34.69130 -34.04623 -33.71916 -33.04473 -31.31956 -31.07680 -29.13325 -28.09740 -25.92996 -25.08574 -23.90777 -23.70422 -22.64271 -21.59885 -20.49310 -19.29154 -18.95754 -17.93967 -17.62221 -16.67742 -16.21980 -16.02374 -15.68107 -15.52069 -15.20869 -15.03864 -14.79881 -14.57393 -14.37411 -14.18522 -13.88343 -13.72777 -13.62346 -13.33045 -13.06468 -12.81893 -12.57855 -12.39886 -12.36565 -12.03619 -11.76121 -11.60166 -11.56193 -11.48376 -11.41150 -11.18103 -11.14727 -11.01110 -10.88592 -10.67684 -10.46045 -10.24034 -9.93136 -9.66300 -9.48938 -8.90252 -8.40954 -8.02106 -7.92920 -6.44418 -3.85341 2.44647 2.79090 3.18228 3.24356 3.28481 3.44796 3.84617 3.88960 4.15948 4.19902 4.28722 4.39654 4.48168 4.62341 4.73386 4.84154 4.91304 4.96332 5.02748 5.10676 5.15791 5.17627 5.21999 5.29175 5.32824 5.39601 5.41153 5.44777 5.50819 5.58267 5.64061 5.67888 5.69582 5.74583 5.79558 5.86305 5.87405 5.98951 6.10079 6.18826 6.21993 6.49153 6.88637 7.09376 7.26793 7.33018 7.52459 8.02035 8.03017 8.58232 9.14988 9.50939 10.02274 10.73109 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.002059 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.134383 B =13592.847231 C =13662.559663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.107 3.893 3 H 0.071 0.929 4 O -0.378 6.378 5 C 0.058 3.942 6 C -0.153 4.153 7 C -0.112 4.112 8 C -0.140 4.140 9 H 0.101 0.899 10 C 0.524 3.476 11 O -0.543 6.543 12 N -0.608 5.608 13 C 0.111 3.889 14 C 0.039 3.961 15 N -0.514 5.514 16 C 0.047 3.953 17 C 0.442 3.558 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.041 3.959 29 C 0.119 3.881 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.027 0.973 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 0.212 -22.869 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.049 3.951 3 H 0.089 0.911 4 O -0.297 6.297 5 C -0.019 4.019 6 C -0.191 4.191 7 C -0.150 4.150 8 C -0.161 4.161 9 H 0.119 0.881 10 C 0.312 3.688 11 O -0.420 6.420 12 N -0.342 5.342 13 C -0.013 4.013 14 C -0.090 4.090 15 N -0.239 5.239 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.088 4.088 29 C -0.003 4.003 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.134 0.866 49 H 0.097 0.903 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.921 1.252 -22.462 25.007 hybrid contribution -1.014 -0.337 0.666 1.259 sum 9.908 0.915 -21.796 23.959 Atomic orbital electron populations 1.21820 0.92608 1.02672 1.03328 1.21841 0.95404 0.95083 0.82822 0.91096 1.87957 1.20916 1.78183 1.42597 1.22597 0.81228 0.99746 0.98306 1.22193 1.01434 1.00624 0.94868 1.21545 0.92532 1.02131 0.98747 1.22049 0.98111 1.01702 0.94272 0.88059 1.20326 0.77159 0.87302 0.84037 1.90685 1.49741 1.16319 1.85285 1.48257 1.69040 1.09109 1.07775 1.21922 0.99071 0.79585 1.00679 1.22500 0.97200 0.98877 0.90463 1.61517 1.46614 1.02070 1.13695 1.21849 0.93692 0.98967 0.93939 1.19699 0.84600 0.86796 0.86120 1.90482 1.42187 1.32635 1.80938 1.41865 1.33810 1.34232 1.10002 1.19646 1.19718 1.17806 0.85737 0.87929 1.25268 0.95876 0.96438 1.00347 1.69598 1.22537 1.26393 1.35732 0.85915 0.78028 0.78940 0.81323 1.19901 1.20989 1.19873 1.22644 0.95007 0.88826 1.02287 1.21770 0.98704 0.96078 0.83722 0.90304 0.91590 0.92124 0.93069 0.88687 0.90312 0.90676 0.91032 0.90589 0.90207 0.89524 0.89412 0.94639 0.89191 0.93437 0.77490 0.91794 0.95497 0.86640 0.90330 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.31 37.16 0.35 -1.14 16 2 C 0.11 1.08 2.41 -26.69 -0.06 1.02 16 3 H 0.07 0.80 7.80 -51.93 -0.40 0.40 16 4 O -0.38 -3.72 10.41 -35.23 -0.37 -4.08 16 5 C 0.06 0.41 6.84 37.20 0.25 0.66 16 6 C -0.15 -0.93 6.14 -26.59 -0.16 -1.10 16 7 C -0.11 -0.86 5.29 -26.55 -0.14 -1.00 16 8 C -0.14 -1.32 1.46 -91.64 -0.13 -1.45 16 9 H 0.10 0.85 6.15 -51.93 -0.32 0.53 16 10 C 0.52 6.49 6.11 -10.98 -0.07 6.43 16 11 O -0.54 -8.46 14.46 5.56 0.08 -8.38 16 12 N -0.61 -7.44 3.01 -172.46 -0.52 -7.95 16 13 C 0.11 1.09 6.29 -3.60 -0.02 1.07 16 14 C 0.04 0.44 5.62 -3.69 -0.02 0.42 16 15 N -0.51 -8.01 4.37 -235.76 -1.03 -9.04 16 16 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 17 C 0.44 10.05 7.44 -10.99 -0.08 9.97 16 18 O -0.58 -14.94 13.91 5.55 0.08 -14.86 16 19 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 24 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.04 0.65 5.26 -3.70 -0.02 0.63 16 29 C 0.12 1.71 6.61 -3.60 -0.02 1.68 16 30 H 0.08 0.91 6.58 -51.93 -0.34 0.57 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.63 5.49 -51.93 -0.29 0.34 16 41 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 1.35 7.97 -51.93 -0.41 0.94 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.12 2.23 5.77 -51.93 -0.30 1.93 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.09 1.37 7.04 -51.93 -0.37 1.00 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -32.04 388.59 -8.83 -40.87 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.16 Total: 9.10 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.41 Total: 10.12 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.88 Total: -54.43 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.21 Total: -27.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.04 -8.83 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112802811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.341 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds