Wall clock time and date at job start Tue Mar 31 2020 23:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49142 * 2 1 4 4 O 1.42904 * 109.47925 * 239.97517 * 2 1 3 5 5 C 1.42906 * 114.09694 * 178.86062 * 4 2 1 6 6 C 1.53088 * 109.41772 * 61.15395 * 5 4 2 7 7 C 1.53177 * 109.16581 * 302.39321 * 6 5 4 8 8 C 1.53084 * 109.48372 * 120.02681 * 2 1 3 9 9 H 1.09006 * 109.57176 * 57.65542 * 8 2 1 10 10 C 1.50697 * 109.52561 * 297.49702 * 8 2 1 11 11 O 1.21279 * 119.99756 * 337.36482 * 10 8 2 12 12 N 1.34782 * 119.99828 * 157.35590 * 10 8 2 13 13 C 1.47075 * 120.88457 * 355.01794 * 12 10 8 14 14 C 1.53242 * 108.52258 * 231.20594 * 13 12 10 15 15 N 1.46908 * 109.33861 * 306.17221 * 14 13 12 16 16 C 1.46900 * 110.99792 * 187.25318 * 15 14 13 17 17 C 1.50696 * 109.46984 * 169.99922 * 16 15 14 18 18 O 1.21291 * 119.99973 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00002 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99887 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00397 * 0.27405 * 20 19 17 22 22 C 1.38958 * 119.99615 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00344 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99547 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47422 * 60.00107 * 24 22 20 26 26 H 1.48504 * 109.47053 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47483 * 300.00187 * 24 22 20 28 28 C 1.46900 * 111.26764 * 63.10208 * 15 14 13 29 29 C 1.47078 * 120.87693 * 175.04032 * 12 10 8 30 30 H 1.09002 * 109.46997 * 299.97392 * 1 2 3 31 31 H 1.08996 * 109.46919 * 59.96902 * 1 2 3 32 32 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.48089 * 301.17084 * 5 4 2 34 34 H 1.09006 * 109.48811 * 181.14409 * 5 4 2 35 35 H 1.09002 * 109.52389 * 182.48552 * 6 5 4 36 36 H 1.09000 * 109.57716 * 62.32547 * 6 5 4 37 37 H 1.09008 * 109.53955 * 297.11364 * 7 6 5 38 38 H 1.08996 * 109.54749 * 176.84939 * 7 6 5 39 39 H 1.09002 * 109.62863 * 111.49696 * 13 12 10 40 40 H 1.09000 * 109.79047 * 351.01038 * 13 12 10 41 41 H 1.08994 * 109.49409 * 186.21212 * 14 13 12 42 42 H 1.09004 * 109.51177 * 66.14097 * 14 13 12 43 43 H 1.08997 * 109.46963 * 49.99962 * 16 15 14 44 44 H 1.09002 * 109.47095 * 289.99845 * 16 15 14 45 45 H 0.96996 * 119.99960 * 359.97438 * 19 17 16 46 46 H 0.97003 * 120.00025 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.49325 * 56.86053 * 28 15 14 48 48 H 1.08998 * 109.48712 * 176.93753 * 28 15 14 49 49 H 1.09001 * 109.63203 * 248.50571 * 29 12 10 50 50 H 1.09004 * 109.63325 * 8.88881 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0065 -0.6741 -1.1665 5 6 3.4307 -0.7093 -1.2791 6 6 4.0177 -1.4600 -0.0810 7 6 3.5712 -0.7709 1.2121 8 6 2.0406 -0.7222 1.2495 9 1 1.6444 -1.7374 1.2720 10 6 1.5904 0.0215 2.4804 11 8 1.3015 1.1971 2.4068 12 7 1.5086 -0.6198 3.6630 13 6 1.7486 -2.0680 3.7547 14 6 0.5738 -2.7098 4.5006 15 7 0.3848 -2.0287 5.7884 16 6 -0.6180 -2.7218 6.6082 17 6 -0.6094 -2.1497 8.0024 18 8 0.1570 -1.2533 8.2853 19 7 -1.4526 -2.6350 8.9351 20 6 -1.4444 -2.1149 10.2035 21 1 -0.7653 -1.3133 10.4542 22 6 -2.3142 -2.6148 11.1650 23 7 -3.1442 -3.5864 10.8586 24 14 -2.3035 -1.9057 12.8931 25 1 -2.6262 -0.4573 12.8359 26 1 -3.3168 -2.6067 13.7221 27 1 -0.9587 -2.0897 13.4955 28 6 0.0244 -0.6176 5.5970 29 6 1.1766 0.1099 4.8961 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 3.8193 0.3090 -1.2959 34 1 3.7101 -1.2202 -2.2006 35 1 5.1059 -1.4497 -0.1422 36 1 3.6623 -2.4905 -0.0859 37 1 3.9690 0.2436 1.2407 38 1 3.9393 -1.3327 2.0705 39 1 2.6736 -2.2520 4.3010 40 1 1.8234 -2.4937 2.7540 41 1 0.7862 -3.7646 4.6747 42 1 -0.3326 -2.6151 3.9025 43 1 -0.3811 -3.7849 6.6502 44 1 -1.6051 -2.5866 6.1661 45 1 -2.0652 -3.3521 8.7089 46 1 -3.7511 -3.9356 11.5299 47 1 -0.8742 -0.5516 4.9837 48 1 -0.1617 -0.1551 6.5664 49 1 2.0467 0.1353 5.5522 50 1 0.8745 1.1278 4.6492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112802811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:12 Heat of formation + Delta-G solvation = -131.612946 kcal Electronic energy + Delta-G solvation = -30601.375458 eV Core-core repulsion = 26434.591601 eV Total energy + Delta-G solvation = -4166.783857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86597 -40.55279 -39.74223 -38.57244 -36.10310 -35.49564 -34.70618 -33.73664 -33.26719 -32.14824 -30.32960 -28.94269 -27.38728 -26.05198 -25.32055 -24.72683 -23.43778 -22.45504 -21.36252 -21.00606 -19.96612 -19.83649 -18.58156 -17.81676 -17.36430 -17.07225 -16.61466 -16.58376 -16.46481 -16.17245 -16.11556 -15.81104 -15.41679 -15.33771 -15.30020 -15.05686 -14.78899 -14.18739 -14.04284 -13.89617 -13.62352 -13.49709 -13.33986 -13.17962 -13.05001 -12.97131 -12.76216 -12.49747 -12.43666 -12.39262 -12.27661 -12.16062 -12.08824 -12.01412 -11.85955 -11.44622 -11.33043 -10.80365 -10.43826 -10.32989 -9.99962 -9.79260 -9.23300 -8.45713 -5.93880 1.39705 1.41753 1.48944 1.52221 1.82725 2.06863 2.28505 2.69327 2.79267 3.21252 3.35518 3.39635 3.54513 3.70482 3.82599 3.93475 3.99487 4.06599 4.10318 4.12243 4.22379 4.29269 4.32760 4.40036 4.46130 4.49527 4.54553 4.57388 4.58577 4.70446 4.72434 4.79202 4.81911 4.85774 4.87898 4.92666 5.02642 5.06106 5.07744 5.20274 5.29905 5.38169 5.41706 5.79991 6.02428 6.14488 6.22105 6.36730 6.61744 7.04819 7.14192 7.58101 8.13796 8.71348 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.002059 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.134383 B =13592.847231 C =13662.559663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 H 0.051 0.949 4 O -0.388 6.388 5 C 0.048 3.952 6 C -0.146 4.146 7 C -0.111 4.111 8 C -0.130 4.130 9 H 0.121 0.879 10 C 0.522 3.478 11 O -0.581 6.581 12 N -0.608 5.608 13 C 0.110 3.890 14 C 0.037 3.963 15 N -0.529 5.529 16 C 0.059 3.941 17 C 0.441 3.559 18 O -0.613 6.613 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.050 3.950 29 C 0.128 3.872 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.042 0.958 43 H 0.119 0.881 44 H 0.063 0.937 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.027 0.973 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.308 -1.969 -24.447 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.050 3.950 3 H 0.069 0.931 4 O -0.308 6.308 5 C -0.028 4.028 6 C -0.183 4.183 7 C -0.149 4.149 8 C -0.151 4.151 9 H 0.139 0.861 10 C 0.312 3.688 11 O -0.462 6.462 12 N -0.340 5.340 13 C -0.012 4.012 14 C -0.091 4.091 15 N -0.254 5.254 16 C -0.072 4.072 17 C 0.228 3.772 18 O -0.499 6.499 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.079 4.079 29 C 0.005 3.995 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.060 0.940 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.842 -0.967 -24.070 26.842 hybrid contribution -1.246 0.379 1.070 1.685 sum 10.596 -0.589 -23.000 25.330 Atomic orbital electron populations 1.21773 0.92881 1.03079 1.02502 1.21705 0.95294 0.94381 0.83602 0.93056 1.87941 1.22712 1.77938 1.42192 1.22859 0.79818 1.00278 0.99849 1.22170 1.02542 1.00567 0.93031 1.21590 0.90981 1.01940 1.00404 1.22035 0.99402 1.01780 0.91921 0.86090 1.20902 0.76212 0.86980 0.84717 1.90671 1.51364 1.18260 1.85867 1.48309 1.68673 1.10186 1.06868 1.22159 0.98643 0.77778 1.02594 1.22686 0.98100 0.99971 0.88321 1.61486 1.46023 1.01754 1.16145 1.21731 0.95197 0.99971 0.90276 1.20782 0.82834 0.85644 0.87943 1.90466 1.43276 1.34047 1.82147 1.41936 1.34732 1.34745 1.09809 1.19598 1.20471 1.18345 0.87606 0.90325 1.26009 0.95172 0.96599 1.03562 1.69658 1.22723 1.26864 1.36883 0.85018 0.78234 0.78219 0.77054 1.19883 1.19585 1.19691 1.22393 0.95724 0.89575 1.00216 1.21460 0.97674 0.95707 0.84631 0.92251 0.91336 0.91008 0.93263 0.86720 0.88412 0.89608 0.92372 0.89388 0.89592 0.86002 0.86726 0.93958 0.86323 0.91883 0.77036 0.91358 0.95445 0.90623 0.91191 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.31 71.98 0.67 -2.17 16 2 C 0.11 2.10 2.41 30.62 0.07 2.17 16 3 H 0.05 1.18 7.80 -2.38 -0.02 1.16 16 4 O -0.39 -6.88 10.41 -148.98 -1.55 -8.43 16 5 C 0.05 0.55 6.84 72.01 0.49 1.05 16 6 C -0.15 -1.26 6.14 30.68 0.19 -1.08 16 7 C -0.11 -1.43 5.29 30.71 0.16 -1.27 16 8 C -0.13 -2.17 1.46 -11.45 -0.02 -2.19 16 9 H 0.12 1.54 6.15 -2.38 -0.01 1.53 16 10 C 0.52 12.52 6.11 87.66 0.54 13.06 16 11 O -0.58 -18.57 14.46 -3.03 -0.04 -18.62 16 12 N -0.61 -14.09 3.01 -817.94 -2.46 -16.55 16 13 C 0.11 1.81 6.29 86.35 0.54 2.35 16 14 C 0.04 0.72 5.62 86.38 0.49 1.21 16 15 N -0.53 -15.75 4.37 -899.81 -3.93 -19.69 16 16 C 0.06 1.92 5.45 85.56 0.47 2.39 16 17 C 0.44 20.30 7.44 87.66 0.65 20.95 16 18 O -0.61 -32.81 13.91 -3.06 -0.04 -32.85 16 19 N -0.57 -28.91 5.29 -306.98 -1.62 -30.53 16 20 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.05 1.62 5.26 86.38 0.45 2.07 16 29 C 0.13 3.76 6.61 86.35 0.57 4.33 16 30 H 0.06 1.39 6.58 -2.39 -0.02 1.38 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.09 0.94 7.96 -2.39 -0.02 0.92 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.12 1.17 5.49 -2.39 -0.01 1.16 16 41 H 0.11 1.68 7.99 -2.39 -0.02 1.66 16 42 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.12 3.21 7.97 -2.39 -0.02 3.19 16 44 H 0.06 1.88 8.12 -2.39 -0.02 1.87 16 45 H 0.40 18.89 7.90 -92.71 -0.73 18.15 16 46 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 47 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 3.09 5.77 -2.39 -0.01 3.07 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.08 2.53 7.04 -2.38 -0.02 2.52 16 Total: -1.00 -72.19 388.59 -0.57 -72.76 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.21 Total: 33.19 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 6.56 Total: 24.87 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -7.73 Total: -115.75 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -1.64 Total: -59.89 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.19 -0.57 -72.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112802811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.857 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds