Wall clock time and date at job start Tue Mar 31 2020 23:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.33581 * 2 1 4 4 O 1.44427 * 110.37302 * 122.24860 * 2 1 3 5 5 C 1.44425 * 105.27599 * 159.45290 * 4 2 1 6 6 C 1.54486 * 104.80353 * 319.49000 * 5 4 2 7 7 C 1.54485 * 110.46796 * 237.68408 * 2 1 3 8 8 C 1.53002 * 110.50795 * 335.78962 * 7 2 1 9 9 C 1.50705 * 110.50983 * 98.49914 * 7 2 1 10 10 O 1.21273 * 120.00160 * 347.90107 * 9 7 2 11 11 N 1.34778 * 119.99603 * 167.90573 * 9 7 2 12 12 C 1.47077 * 120.88197 * 4.63558 * 11 9 7 13 13 C 1.53698 * 108.27305 * 128.76277 * 12 11 9 14 14 N 1.46897 * 109.26052 * 54.08274 * 13 12 11 15 15 C 1.46897 * 111.00310 * 172.60977 * 14 13 12 16 16 C 1.50702 * 109.47135 * 59.39211 * 15 14 13 17 17 O 1.21294 * 120.00070 * 5.68599 * 16 15 14 18 18 N 1.34776 * 120.00088 * 185.68181 * 16 15 14 19 19 C 1.37102 * 119.99955 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00155 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99512 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00640 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47221 * 89.99812 * 23 21 19 25 25 H 1.48500 * 109.47448 * 210.00116 * 23 21 19 26 26 H 1.48504 * 109.47010 * 330.00447 * 23 21 19 27 27 C 1.46900 * 111.26602 * 296.75702 * 14 13 12 28 28 C 1.47077 * 120.87730 * 184.92363 * 11 9 7 29 29 H 1.08998 * 109.47181 * 299.20569 * 1 2 3 30 30 H 1.09007 * 109.47050 * 59.20358 * 1 2 3 31 31 H 1.08997 * 109.47406 * 179.20280 * 1 2 3 32 32 H 1.09008 * 110.37051 * 200.65907 * 5 4 2 33 33 H 1.08997 * 110.37420 * 78.31940 * 5 4 2 34 34 H 1.08992 * 110.50652 * 142.62593 * 6 5 4 35 35 H 1.09001 * 110.50943 * 265.33041 * 6 5 4 36 36 H 1.08995 * 109.47301 * 298.85131 * 8 7 2 37 37 H 1.09000 * 109.47261 * 58.85895 * 8 7 2 38 38 H 1.09008 * 109.46412 * 178.85481 * 8 7 2 39 39 H 1.09007 * 109.63017 * 248.52505 * 12 11 9 40 40 H 1.08995 * 109.63088 * 9.11074 * 12 11 9 41 41 H 1.09002 * 109.64761 * 294.07752 * 13 12 11 42 42 H 1.08998 * 109.44091 * 173.96191 * 13 12 11 43 43 H 1.08995 * 109.47378 * 179.39297 * 15 14 13 44 44 H 1.09007 * 109.47080 * 299.39787 * 15 14 13 45 45 H 0.97003 * 120.00044 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00484 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.49380 * 303.14692 * 27 14 13 48 48 H 1.08997 * 109.51602 * 183.08018 * 27 14 13 49 49 H 1.09004 * 109.63047 * 350.89094 * 28 11 9 50 50 H 1.09000 * 109.63479 * 111.27534 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0327 -0.7224 1.1451 5 6 3.3882 -1.0840 0.8017 6 6 3.3207 -1.5032 -0.6836 7 6 2.0702 -0.7737 -1.2231 8 6 1.0331 -1.7832 -1.7196 9 6 2.4502 0.1806 -2.3259 10 8 2.1127 1.3438 -2.2643 11 7 3.1652 -0.2587 -3.3805 12 6 3.4981 -1.6839 -3.5258 13 6 3.0856 -2.1338 -4.9364 14 7 3.7071 -1.2470 -5.9290 15 6 3.4826 -1.7441 -7.2929 16 6 2.0018 -1.8260 -7.5604 17 8 1.2132 -1.4061 -6.7400 18 7 1.5537 -2.3657 -8.7112 19 6 0.2065 -2.4397 -8.9547 20 1 -0.4956 -2.0652 -8.2246 21 6 -0.2554 -2.9956 -10.1414 22 7 0.5989 -3.4509 -11.0301 23 14 -2.0910 -3.0972 -10.4729 24 1 -2.5377 -1.8627 -11.1671 25 1 -2.3749 -4.2769 -11.3290 26 1 -2.8197 -3.2325 -9.1860 27 6 3.2255 0.1334 -5.7859 28 6 3.6386 0.6754 -4.4133 29 1 -0.3633 0.5014 0.8970 30 1 -0.3633 0.5262 -0.8828 31 1 -0.3634 -1.0275 -0.0143 32 1 3.7257 -1.9185 1.4166 33 1 4.0519 -0.2282 0.9246 34 1 4.2138 -1.1737 -1.2143 35 1 3.2002 -2.5831 -0.7706 36 1 0.8218 -2.5049 -0.9306 37 1 0.1157 -1.2593 -1.9882 38 1 1.4232 -2.3044 -2.5939 39 1 4.5708 -1.8249 -3.3924 40 1 2.9542 -2.2648 -2.7811 41 1 2.0010 -2.0853 -5.0340 42 1 3.4204 -3.1575 -5.1032 43 1 3.9439 -1.0633 -8.0083 44 1 3.9258 -2.7347 -7.3962 45 1 2.1843 -2.7018 -9.3672 46 1 0.2764 -3.8393 -11.8583 47 1 2.1390 0.1503 -5.8716 48 1 3.6617 0.7543 -6.5684 49 1 3.1875 1.6550 -4.2555 50 1 4.7241 0.7595 -4.3612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113137582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:01 Heat of formation + Delta-G solvation = -92.407855 kcal Electronic energy + Delta-G solvation = -31670.578279 eV Core-core repulsion = 27505.494482 eV Total energy + Delta-G solvation = -4165.083796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26009 -39.47514 -38.47612 -36.99061 -34.81256 -34.08100 -33.55323 -31.84948 -31.39219 -30.78819 -28.83869 -27.97868 -26.11790 -25.30867 -23.97701 -23.69759 -22.50714 -21.82855 -20.22684 -19.45532 -18.73568 -17.91423 -17.01682 -16.57696 -16.11632 -15.95794 -15.70952 -15.33263 -15.05361 -14.90043 -14.76780 -14.58982 -14.40160 -13.97141 -13.88399 -13.65744 -13.51405 -13.16644 -12.78494 -12.62236 -12.55645 -12.27177 -11.88267 -11.78713 -11.70918 -11.62287 -11.50792 -11.37834 -11.22212 -11.14727 -10.95577 -10.86524 -10.73882 -10.69508 -10.47422 -10.32511 -9.94063 -9.60387 -9.55616 -9.34076 -8.65155 -8.07746 -7.52841 -6.52634 -3.94234 2.57494 2.92462 3.09351 3.19760 3.25003 3.62658 3.73957 4.08511 4.15735 4.20837 4.38086 4.41251 4.62442 4.86774 4.89010 4.92082 5.03844 5.09776 5.20641 5.23402 5.25743 5.32584 5.35522 5.39268 5.42671 5.51883 5.55766 5.58611 5.60489 5.67589 5.74312 5.80055 5.88375 5.90490 5.92941 5.97516 6.00313 6.12433 6.14491 6.42325 6.51051 6.60409 6.64047 7.13745 7.28011 7.43809 7.44361 7.93350 8.13552 8.47647 9.05651 9.41113 9.91281 10.63767 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.002839 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.109505 B = 9861.981192 C =10661.358893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.093 3.907 3 H 0.083 0.917 4 O -0.370 6.370 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.109 4.109 8 C -0.145 4.145 9 C 0.531 3.469 10 O -0.543 6.543 11 N -0.602 5.602 12 C 0.102 3.898 13 C 0.021 3.979 14 N -0.512 5.512 15 C 0.041 3.959 16 C 0.404 3.596 17 O -0.594 6.594 18 N -0.554 5.554 19 C -0.303 4.303 20 H 0.102 0.898 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.929 3.071 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.025 3.975 28 C 0.120 3.880 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.273 0.727 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 1.413 17.125 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.101 0.899 4 O -0.289 6.289 5 C -0.031 4.031 6 C -0.187 4.187 7 C -0.113 4.113 8 C -0.202 4.202 9 C 0.319 3.681 10 O -0.421 6.421 11 N -0.334 5.334 12 C -0.021 4.021 13 C -0.107 4.107 14 N -0.235 5.235 15 C -0.090 4.090 16 C 0.189 3.811 17 O -0.481 6.481 18 N -0.189 5.189 19 C -0.433 4.433 20 H 0.120 0.880 21 C -0.177 4.177 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.104 4.104 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.226 0.774 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.109 0.891 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.445 2.173 17.782 19.805 hybrid contribution -1.083 -0.400 -1.331 1.762 sum 7.362 1.773 16.450 18.110 Atomic orbital electron populations 1.21883 0.92723 1.03020 1.02736 1.22861 0.95790 0.95401 0.82401 0.89911 1.89134 1.26733 1.74927 1.38149 1.23376 0.85040 1.00007 0.94666 1.23246 0.97251 1.01519 0.96638 1.22098 0.97436 0.96494 0.95256 1.22134 0.98356 0.97912 1.01834 1.20192 0.77176 0.88298 0.82451 1.90666 1.54223 1.18645 1.78521 1.48023 1.53461 1.08936 1.23013 1.22360 1.00794 0.80853 0.98096 1.22782 1.01454 0.96169 0.90309 1.62450 1.56175 1.02347 1.02562 1.22058 0.94130 1.01932 0.90910 1.21066 0.90852 0.84988 0.84175 1.90425 1.57461 1.53595 1.46657 1.42056 1.08278 1.52000 1.16588 1.19705 0.82793 1.37584 1.03225 0.87983 1.25289 1.00353 0.96574 0.95501 1.69603 1.34838 1.40170 1.09186 0.85868 0.82090 0.77836 0.78580 1.20309 1.20800 1.19397 1.22671 1.02425 0.89483 0.95797 1.21719 0.98874 0.93352 0.86301 0.91885 0.90656 0.91355 0.88775 0.92269 0.89791 0.89306 0.90840 0.91020 0.90860 0.91133 0.88606 0.89969 0.90539 0.89172 0.89258 0.77362 0.91691 0.90044 0.90573 0.89124 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.39 37.16 0.31 -1.30 16 2 C 0.09 1.12 3.10 -25.95 -0.08 1.03 16 3 H 0.08 1.11 7.11 -51.93 -0.37 0.74 16 4 O -0.37 -4.32 11.34 -35.23 -0.40 -4.72 16 5 C 0.05 0.41 7.63 37.94 0.29 0.70 16 6 C -0.15 -1.30 4.66 -25.16 -0.12 -1.42 16 7 C -0.11 -1.25 0.60 -154.09 -0.09 -1.34 16 8 C -0.15 -1.59 6.78 37.16 0.25 -1.34 16 9 C 0.53 7.62 6.38 -10.98 -0.07 7.55 16 10 O -0.54 -9.48 15.07 5.56 0.08 -9.40 16 11 N -0.60 -8.13 2.90 -172.18 -0.50 -8.63 16 12 C 0.10 1.18 4.45 -3.36 -0.01 1.16 16 13 C 0.02 0.31 5.14 -3.46 -0.02 0.30 16 14 N -0.51 -7.76 4.83 -235.46 -1.14 -8.90 16 15 C 0.04 0.68 5.84 -4.98 -0.03 0.65 16 16 C 0.40 8.77 7.18 -10.98 -0.08 8.69 16 17 O -0.59 -14.60 11.25 5.55 0.06 -14.53 16 18 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 19 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 23 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C 0.02 0.39 5.21 -3.70 -0.02 0.37 16 28 C 0.12 1.66 6.61 -3.60 -0.02 1.64 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 31 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 32 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.72 6.65 -51.93 -0.35 0.37 16 35 H 0.09 0.64 7.33 -51.93 -0.38 0.26 16 36 H 0.07 0.69 7.78 -51.93 -0.40 0.28 16 37 H 0.07 0.86 6.67 -51.93 -0.35 0.51 16 38 H 0.07 0.82 5.41 -51.92 -0.28 0.54 16 39 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.10 0.96 3.00 -51.93 -0.16 0.80 16 41 H 0.08 1.53 5.71 -51.93 -0.30 1.23 16 42 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 43 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.08 1.63 5.76 -51.93 -0.30 1.33 16 48 H 0.08 1.10 8.06 -51.93 -0.42 0.69 16 49 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -31.28 374.98 -8.14 -39.43 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.62 Total: 13.00 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.07 Total: 8.95 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.97 Total: -53.91 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.25 Total: -28.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.28 -8.14 -39.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.982 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds