Wall clock time and date at job start Tue Mar 31 2020 23:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.33581 * 2 1 4 4 O 1.44427 * 110.37302 * 122.24860 * 2 1 3 5 5 C 1.44425 * 105.27599 * 159.45290 * 4 2 1 6 6 C 1.54486 * 104.80353 * 319.49000 * 5 4 2 7 7 C 1.54485 * 110.46796 * 237.68408 * 2 1 3 8 8 C 1.53002 * 110.50795 * 335.78962 * 7 2 1 9 9 C 1.50705 * 110.50983 * 98.49914 * 7 2 1 10 10 O 1.21273 * 120.00160 * 347.90107 * 9 7 2 11 11 N 1.34778 * 119.99603 * 167.90573 * 9 7 2 12 12 C 1.47077 * 120.88197 * 4.63558 * 11 9 7 13 13 C 1.53698 * 108.27305 * 128.76277 * 12 11 9 14 14 N 1.46897 * 109.26052 * 54.08274 * 13 12 11 15 15 C 1.46897 * 111.00310 * 172.60977 * 14 13 12 16 16 C 1.50702 * 109.47135 * 59.39211 * 15 14 13 17 17 O 1.21294 * 120.00070 * 5.68599 * 16 15 14 18 18 N 1.34776 * 120.00088 * 185.68181 * 16 15 14 19 19 C 1.37102 * 119.99955 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00155 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99512 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00640 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99819 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47221 * 89.99812 * 23 21 19 25 25 H 1.48500 * 109.47448 * 210.00116 * 23 21 19 26 26 H 1.48504 * 109.47010 * 330.00447 * 23 21 19 27 27 C 1.46900 * 111.26602 * 296.75702 * 14 13 12 28 28 C 1.47077 * 120.87730 * 184.92363 * 11 9 7 29 29 H 1.08998 * 109.47181 * 299.20569 * 1 2 3 30 30 H 1.09007 * 109.47050 * 59.20358 * 1 2 3 31 31 H 1.08997 * 109.47406 * 179.20280 * 1 2 3 32 32 H 1.09008 * 110.37051 * 200.65907 * 5 4 2 33 33 H 1.08997 * 110.37420 * 78.31940 * 5 4 2 34 34 H 1.08992 * 110.50652 * 142.62593 * 6 5 4 35 35 H 1.09001 * 110.50943 * 265.33041 * 6 5 4 36 36 H 1.08995 * 109.47301 * 298.85131 * 8 7 2 37 37 H 1.09000 * 109.47261 * 58.85895 * 8 7 2 38 38 H 1.09008 * 109.46412 * 178.85481 * 8 7 2 39 39 H 1.09007 * 109.63017 * 248.52505 * 12 11 9 40 40 H 1.08995 * 109.63088 * 9.11074 * 12 11 9 41 41 H 1.09002 * 109.64761 * 294.07752 * 13 12 11 42 42 H 1.08998 * 109.44091 * 173.96191 * 13 12 11 43 43 H 1.08995 * 109.47378 * 179.39297 * 15 14 13 44 44 H 1.09007 * 109.47080 * 299.39787 * 15 14 13 45 45 H 0.97003 * 120.00044 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00484 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.49380 * 303.14692 * 27 14 13 48 48 H 1.08997 * 109.51602 * 183.08018 * 27 14 13 49 49 H 1.09004 * 109.63047 * 350.89094 * 28 11 9 50 50 H 1.09000 * 109.63479 * 111.27534 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0327 -0.7224 1.1451 5 6 3.3882 -1.0840 0.8017 6 6 3.3207 -1.5032 -0.6836 7 6 2.0702 -0.7737 -1.2231 8 6 1.0331 -1.7832 -1.7196 9 6 2.4502 0.1806 -2.3259 10 8 2.1127 1.3438 -2.2643 11 7 3.1652 -0.2587 -3.3805 12 6 3.4981 -1.6839 -3.5258 13 6 3.0856 -2.1338 -4.9364 14 7 3.7071 -1.2470 -5.9290 15 6 3.4826 -1.7441 -7.2929 16 6 2.0018 -1.8260 -7.5604 17 8 1.2132 -1.4061 -6.7400 18 7 1.5537 -2.3657 -8.7112 19 6 0.2065 -2.4397 -8.9547 20 1 -0.4956 -2.0652 -8.2246 21 6 -0.2554 -2.9956 -10.1414 22 7 0.5989 -3.4509 -11.0301 23 14 -2.0910 -3.0972 -10.4729 24 1 -2.5377 -1.8627 -11.1671 25 1 -2.3749 -4.2769 -11.3290 26 1 -2.8197 -3.2325 -9.1860 27 6 3.2255 0.1334 -5.7859 28 6 3.6386 0.6754 -4.4133 29 1 -0.3633 0.5014 0.8970 30 1 -0.3633 0.5262 -0.8828 31 1 -0.3634 -1.0275 -0.0143 32 1 3.7257 -1.9185 1.4166 33 1 4.0519 -0.2282 0.9246 34 1 4.2138 -1.1737 -1.2143 35 1 3.2002 -2.5831 -0.7706 36 1 0.8218 -2.5049 -0.9306 37 1 0.1157 -1.2593 -1.9882 38 1 1.4232 -2.3044 -2.5939 39 1 4.5708 -1.8249 -3.3924 40 1 2.9542 -2.2648 -2.7811 41 1 2.0010 -2.0853 -5.0340 42 1 3.4204 -3.1575 -5.1032 43 1 3.9439 -1.0633 -8.0083 44 1 3.9258 -2.7347 -7.3962 45 1 2.1843 -2.7018 -9.3672 46 1 0.2764 -3.8393 -11.8583 47 1 2.1390 0.1503 -5.8716 48 1 3.6617 0.7543 -6.5684 49 1 3.1875 1.6550 -4.2555 50 1 4.7241 0.7595 -4.3612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113137582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:00 Heat of formation + Delta-G solvation = -116.207380 kcal Electronic energy + Delta-G solvation = -31671.610303 eV Core-core repulsion = 27505.494482 eV Total energy + Delta-G solvation = -4166.115821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.26404 -40.86194 -39.69616 -38.37551 -36.24140 -35.55468 -34.74273 -33.33549 -32.71889 -31.85696 -30.15941 -28.84670 -27.54134 -26.48979 -25.41067 -24.83699 -23.41427 -22.86297 -21.43723 -21.02081 -20.07386 -19.58701 -18.09107 -17.73566 -17.68726 -16.86069 -16.62161 -16.60825 -16.38359 -16.20974 -16.05188 -15.94259 -15.56788 -15.39339 -15.25964 -15.12882 -14.56861 -14.39743 -13.70225 -13.65408 -13.62182 -13.50269 -13.28513 -13.07699 -13.03958 -12.81969 -12.73013 -12.61308 -12.46797 -12.29968 -12.17073 -12.08742 -12.06343 -11.99421 -11.82590 -11.60157 -11.40526 -10.99961 -10.84498 -10.65032 -10.01569 -9.80942 -9.03693 -8.49028 -5.98607 1.33091 1.38296 1.46788 1.49838 1.87671 2.00036 2.26096 2.78455 2.94915 3.17355 3.24449 3.32984 3.43905 3.57625 3.77009 3.95296 4.00265 4.12404 4.13495 4.20441 4.32227 4.33534 4.35186 4.43666 4.48222 4.55060 4.57092 4.60255 4.63229 4.69109 4.69658 4.73415 4.80044 4.86806 4.95031 4.97007 5.00688 5.07526 5.12701 5.22017 5.29685 5.38915 5.42619 5.78831 5.81914 5.98765 6.00521 6.34596 6.56383 7.02744 7.09575 7.53312 8.08560 8.66266 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.002839 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.109505 B = 9861.981192 C =10661.358893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.093 3.907 3 H 0.061 0.939 4 O -0.382 6.382 5 C 0.041 3.959 6 C -0.143 4.143 7 C -0.106 4.106 8 C -0.142 4.142 9 C 0.524 3.476 10 O -0.584 6.584 11 N -0.604 5.604 12 C 0.108 3.892 13 C 0.020 3.980 14 N -0.495 5.495 15 C 0.050 3.950 16 C 0.406 3.594 17 O -0.623 6.623 18 N -0.569 5.569 19 C -0.332 4.332 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.275 1.275 27 C 0.030 3.970 28 C 0.124 3.876 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.033 0.967 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 -0.202 18.024 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.035 3.965 3 H 0.079 0.921 4 O -0.301 6.301 5 C -0.036 4.036 6 C -0.180 4.180 7 C -0.109 4.109 8 C -0.199 4.199 9 C 0.313 3.687 10 O -0.464 6.464 11 N -0.336 5.336 12 C -0.014 4.014 13 C -0.109 4.109 14 N -0.218 5.218 15 C -0.082 4.082 16 C 0.194 3.806 17 O -0.511 6.511 18 N -0.206 5.206 19 C -0.462 4.462 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.811 3.189 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.099 4.099 28 C 0.002 3.998 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.403 0.538 18.683 21.390 hybrid contribution -1.645 0.160 -1.546 2.263 sum 8.758 0.697 17.136 19.257 Atomic orbital electron populations 1.21851 0.92523 1.03517 1.02294 1.22734 0.96056 0.94606 0.83071 0.92077 1.89121 1.28286 1.74742 1.37974 1.23611 0.83723 1.01077 0.95142 1.23297 0.95815 1.02563 0.96354 1.22081 0.98945 0.96019 0.93899 1.22122 0.97423 0.97935 1.02421 1.20783 0.76482 0.88287 0.83164 1.90643 1.55679 1.20592 1.79497 1.48161 1.53006 1.09811 1.22578 1.22503 1.02810 0.79617 0.96477 1.22814 0.98773 0.97305 0.91999 1.62560 1.55089 1.02025 1.02078 1.22179 0.89797 1.04126 0.92080 1.22200 0.93229 0.82529 0.82671 1.90450 1.59324 1.53976 1.47381 1.42122 1.07394 1.53401 1.17645 1.19588 0.84005 1.39128 1.03483 0.90729 1.25966 1.04143 0.95933 0.94944 1.69654 1.36211 1.40455 1.09458 0.85014 0.77444 0.78244 0.78170 1.19906 1.19377 1.19959 1.22573 0.99416 0.90352 0.97570 1.21652 1.00219 0.92676 0.85285 0.91259 0.92224 0.90311 0.86093 0.92181 0.89074 0.86867 0.88663 0.92886 0.91086 0.88028 0.86829 0.94391 0.88601 0.87124 0.86529 0.76949 0.91247 0.94878 0.89362 0.90719 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.39 71.98 0.60 -2.63 16 2 C 0.09 2.21 3.10 31.10 0.10 2.31 16 3 H 0.06 1.71 7.11 -2.39 -0.02 1.69 16 4 O -0.38 -8.28 11.34 -148.98 -1.69 -9.97 16 5 C 0.04 0.61 7.63 72.49 0.55 1.16 16 6 C -0.14 -2.06 4.66 31.61 0.15 -1.91 16 7 C -0.11 -2.30 0.60 -51.91 -0.03 -2.33 16 8 C -0.14 -2.97 6.78 71.98 0.49 -2.48 16 9 C 0.52 15.01 6.38 87.66 0.56 15.57 16 10 O -0.58 -21.21 15.07 -3.01 -0.05 -21.26 16 11 N -0.60 -15.69 2.90 -817.05 -2.37 -18.06 16 12 C 0.11 2.19 4.45 86.50 0.39 2.58 16 13 C 0.02 0.54 5.14 86.54 0.44 0.99 16 14 N -0.50 -14.05 4.83 -898.88 -4.34 -18.39 16 15 C 0.05 1.54 5.84 85.56 0.50 2.04 16 16 C 0.41 17.84 7.18 87.66 0.63 18.47 16 17 O -0.62 -31.79 11.25 -3.07 -0.03 -31.82 16 18 N -0.57 -27.82 5.29 -306.98 -1.62 -29.44 16 19 C -0.33 -18.37 9.68 84.04 0.81 -17.55 16 20 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 22 N -0.92 -48.41 13.05 21.66 0.28 -48.12 16 23 Si 0.99 42.45 29.55 68.60 2.03 44.47 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 C 0.03 0.92 5.21 86.38 0.45 1.37 16 28 C 0.12 3.35 6.61 86.35 0.57 3.92 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.50 7.88 -2.38 -0.02 1.48 16 31 H 0.08 1.56 6.50 -2.39 -0.02 1.54 16 32 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.22 6.65 -2.39 -0.02 1.20 16 35 H 0.11 1.12 7.33 -2.39 -0.02 1.10 16 36 H 0.09 1.57 7.78 -2.39 -0.02 1.55 16 37 H 0.05 1.30 6.67 -2.39 -0.02 1.28 16 38 H 0.07 1.51 5.41 -2.38 -0.01 1.50 16 39 H 0.10 1.55 8.09 -2.38 -0.02 1.54 16 40 H 0.11 1.93 3.00 -2.39 -0.01 1.92 16 41 H 0.04 1.42 5.71 -2.39 -0.01 1.41 16 42 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 43 H 0.11 3.04 8.07 -2.39 -0.02 3.02 16 44 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 45 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 46 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 47 H 0.03 1.37 5.76 -2.39 -0.01 1.36 16 48 H 0.09 2.48 8.06 -2.39 -0.02 2.46 16 49 H 0.07 2.26 7.04 -2.38 -0.02 2.24 16 50 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.34 374.98 -0.87 -72.21 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: 0.24 Total: 38.93 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 6.68 Total: 21.45 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -8.05 Total: -114.02 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -1.77 Total: -63.05 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.34 -0.87 -72.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.994 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds