Wall clock time and date at job start Tue Mar 31 2020 23:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.41656 * 2 1 4 4 O 1.44433 * 110.37596 * 237.69429 * 2 1 3 5 5 C 1.44423 * 105.27481 * 200.65411 * 4 2 1 6 6 C 1.54799 * 104.80168 * 40.58660 * 5 4 2 7 7 C 1.54477 * 110.37477 * 122.30967 * 2 1 3 8 8 C 1.52998 * 110.50912 * 24.03334 * 7 2 1 9 9 C 1.50694 * 110.51054 * 261.45651 * 7 2 1 10 10 O 1.21279 * 120.00500 * 8.87251 * 9 7 2 11 11 N 1.34780 * 119.99839 * 188.86632 * 9 7 2 12 12 C 1.47077 * 120.88245 * 175.05520 * 11 9 7 13 13 C 1.53238 * 108.68556 * 231.11196 * 12 11 9 14 14 N 1.46955 * 109.31007 * 306.46895 * 13 12 11 15 15 C 1.46901 * 110.97239 * 187.06498 * 14 13 12 16 16 C 1.50700 * 109.46846 * 298.46967 * 15 14 13 17 17 O 1.21299 * 119.99974 * 3.99452 * 16 15 14 18 18 N 1.34776 * 120.00345 * 184.00172 * 16 15 14 19 19 C 1.37096 * 120.00119 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00438 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99694 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99898 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00163 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47258 * 89.99394 * 23 21 19 25 25 H 1.48496 * 109.47367 * 209.99606 * 23 21 19 26 26 H 1.48497 * 109.47065 * 329.99508 * 23 21 19 27 27 C 1.46899 * 111.44398 * 62.80730 * 14 13 12 28 28 C 1.47077 * 120.88184 * 355.07616 * 11 9 7 29 29 H 1.08994 * 109.47288 * 297.68701 * 1 2 3 30 30 H 1.08995 * 109.47235 * 57.69260 * 1 2 3 31 31 H 1.08999 * 109.46865 * 177.68790 * 1 2 3 32 32 H 1.08998 * 110.37178 * 159.34123 * 5 4 2 33 33 H 1.08999 * 110.37363 * 281.56817 * 5 4 2 34 34 H 1.09007 * 110.55000 * 217.33125 * 6 5 4 35 35 H 1.08995 * 110.61189 * 94.52960 * 6 5 4 36 36 H 1.09003 * 109.46944 * 302.94475 * 8 7 2 37 37 H 1.08999 * 109.47426 * 62.94610 * 8 7 2 38 38 H 1.09001 * 109.46845 * 182.94883 * 8 7 2 39 39 H 1.08998 * 109.62932 * 350.91946 * 12 11 9 40 40 H 1.09005 * 109.63206 * 111.29891 * 12 11 9 41 41 H 1.09000 * 109.49355 * 66.22410 * 13 12 11 42 42 H 1.09001 * 109.49715 * 186.31127 * 13 12 11 43 43 H 1.09002 * 109.47234 * 58.46541 * 15 14 13 44 44 H 1.08995 * 109.47358 * 178.47348 * 15 14 13 45 45 H 0.97003 * 119.99644 * 359.97438 * 18 16 15 46 46 H 0.96997 * 120.00120 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.49335 * 177.02597 * 27 14 13 48 48 H 1.08998 * 109.49068 * 56.94557 * 27 14 13 49 49 H 1.09001 * 109.63410 * 248.50358 * 28 11 9 50 50 H 1.08998 * 109.62999 * 8.89585 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 8 2.0328 -0.7236 -1.1444 5 6 3.3874 -1.0870 -0.7996 6 6 3.3173 -1.5083 0.6883 7 6 2.0678 -0.7740 1.2239 8 6 1.0275 -1.7794 1.7218 9 6 2.4482 0.1801 2.3266 10 8 2.1634 1.3555 2.2366 11 7 3.1049 -0.2729 3.4129 12 6 3.5805 0.6560 4.4493 13 6 5.0623 0.3738 4.7189 14 7 5.2369 -1.0519 5.0293 15 6 6.6140 -1.3321 5.4572 16 6 7.5661 -0.9924 4.3396 17 8 7.1473 -0.4919 3.3171 18 7 8.8830 -1.2447 4.4760 19 6 9.7491 -0.9361 3.4590 20 1 9.3761 -0.4912 2.5484 21 6 11.1068 -1.1958 3.6000 22 7 11.9369 -0.9005 2.6250 23 14 11.7519 -1.9661 5.1748 24 1 11.7356 -3.4453 5.0451 25 1 13.1427 -1.5058 5.4174 26 1 10.8902 -1.5595 6.3138 27 6 4.8562 -1.8998 3.8918 28 6 3.3652 -1.7091 3.5932 29 1 -0.3633 0.4775 0.9099 30 1 -0.3633 0.5492 -0.8685 31 1 -0.3633 -1.0268 -0.0415 32 1 3.7243 -1.9221 -1.4137 33 1 4.0528 -0.2327 -0.9240 34 1 4.2102 -1.1812 1.2212 35 1 3.1930 -2.5876 0.7761 36 1 0.1013 -1.2562 1.9596 37 1 0.8372 -2.5201 0.9451 38 1 1.4029 -2.2781 2.6154 39 1 3.4603 1.6828 4.1039 40 1 3.0072 0.5083 5.3646 41 1 5.6472 0.6248 3.8340 42 1 5.4001 0.9768 5.5617 43 1 6.8521 -0.7289 6.3333 44 1 6.7090 -2.3888 5.7068 45 1 9.2180 -1.6447 5.2938 46 1 12.8847 -1.0821 2.7232 47 1 5.0473 -2.9446 4.1368 48 1 5.4414 -1.6182 3.0164 49 1 2.7736 -2.0868 4.4272 50 1 3.0996 -2.2465 2.6829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113137584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:08 Heat of formation + Delta-G solvation = -85.483044 kcal Electronic energy + Delta-G solvation = -31879.260508 eV Core-core repulsion = 27714.476994 eV Total energy + Delta-G solvation = -4164.783514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25593 -39.54881 -38.51597 -37.10406 -34.86181 -34.09972 -33.60085 -31.87387 -31.79878 -30.78558 -29.02365 -27.94267 -26.21265 -25.34058 -23.80765 -23.71220 -22.39977 -21.95896 -20.17626 -19.57991 -18.94219 -18.20001 -17.09430 -16.55621 -16.15802 -15.93851 -15.64977 -15.21697 -15.14185 -15.03578 -14.82888 -14.56314 -14.35929 -14.14232 -14.01000 -13.63078 -13.44764 -13.08796 -12.77382 -12.66240 -12.54946 -12.39032 -12.27966 -11.92536 -11.81501 -11.71197 -11.60424 -11.38189 -11.31682 -11.15802 -10.98883 -10.92100 -10.78260 -10.72566 -10.68894 -10.11825 -9.85112 -9.63778 -9.60317 -9.44855 -8.69451 -8.30153 -7.62672 -6.43641 -3.95385 2.56212 2.90491 2.93634 2.97988 3.07357 3.54522 3.71174 3.99306 4.07398 4.24044 4.40642 4.44581 4.54146 4.67891 4.89539 5.00811 5.02947 5.06327 5.14539 5.19524 5.23363 5.33219 5.36641 5.38310 5.46378 5.50279 5.53755 5.54419 5.67684 5.69976 5.73265 5.76703 5.78180 5.80641 5.82020 5.84466 5.91931 5.95745 6.04940 6.31568 6.45485 6.55548 6.72242 7.02846 7.18022 7.39950 7.43840 8.01787 8.11861 8.44323 8.81479 9.28948 9.66366 10.68988 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.003021 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.281343 B = 9265.642044 C =10113.149558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 H 0.085 0.915 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.150 4.150 7 C -0.111 4.111 8 C -0.144 4.144 9 C 0.532 3.468 10 O -0.543 6.543 11 N -0.602 5.602 12 C 0.121 3.879 13 C 0.020 3.980 14 N -0.512 5.512 15 C 0.039 3.961 16 C 0.412 3.588 17 O -0.577 6.577 18 N -0.581 5.581 19 C -0.309 4.309 20 H 0.119 0.881 21 C 0.043 3.957 22 N -0.876 5.876 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.268 1.268 27 C 0.023 3.977 28 C 0.103 3.897 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.371 0.629 46 H 0.275 0.725 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.339 -4.846 3.156 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.102 0.898 4 O -0.290 6.290 5 C -0.031 4.031 6 C -0.187 4.187 7 C -0.114 4.114 8 C -0.201 4.201 9 C 0.320 3.680 10 O -0.420 6.420 11 N -0.335 5.335 12 C -0.002 4.002 13 C -0.108 4.108 14 N -0.235 5.235 15 C -0.093 4.093 16 C 0.198 3.802 17 O -0.462 6.462 18 N -0.219 5.219 19 C -0.438 4.438 20 H 0.136 0.864 21 C -0.161 4.161 22 N -0.515 5.515 23 Si 0.707 3.293 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.105 4.105 28 C -0.020 4.020 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.204 0.796 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.974 -4.035 2.538 20.535 hybrid contribution 1.729 -0.478 0.906 2.010 sum -18.245 -4.513 3.444 19.108 Atomic orbital electron populations 1.21852 0.92968 1.02690 1.02532 1.22865 0.95466 0.95727 0.82605 0.89752 1.89113 1.27150 1.74752 1.38010 1.23450 0.84628 1.00440 0.94549 1.23306 0.97396 1.01073 0.96971 1.22102 0.97551 0.96461 0.95315 1.22126 0.98071 0.98061 1.01850 1.20214 0.77143 0.88479 0.82207 1.90667 1.54723 1.17660 1.78972 1.48006 1.55961 1.08130 1.21377 1.21701 0.94311 0.94104 0.90044 1.22783 0.95688 0.89013 1.03323 1.62408 1.20376 1.05586 1.35171 1.22105 0.87327 1.02635 0.97236 1.21024 0.83393 0.85444 0.90306 1.90453 1.76318 1.48315 1.31141 1.42404 1.06974 1.55574 1.16925 1.19439 0.87688 1.39257 0.97437 0.86367 1.25089 0.95787 0.97529 0.97653 1.69622 1.03975 1.46225 1.31715 0.86660 0.79654 0.80182 0.82849 1.19520 1.20071 1.19386 1.22667 0.94921 0.97536 0.95395 1.22224 0.96605 0.80948 1.02252 0.90971 0.91887 0.91532 0.88622 0.91818 0.89095 0.89429 0.91323 0.90819 0.91313 0.89126 0.91447 0.89480 0.90437 0.88981 0.89160 0.79571 0.91450 0.90355 0.90500 0.91000 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.33 37.16 0.31 -1.14 16 2 C 0.09 1.14 3.13 -25.96 -0.08 1.06 16 3 H 0.08 1.23 7.05 -51.93 -0.37 0.86 16 4 O -0.37 -4.84 11.34 -35.23 -0.40 -5.24 16 5 C 0.05 0.54 7.64 38.11 0.29 0.84 16 6 C -0.15 -1.69 4.60 -24.99 -0.11 -1.81 16 7 C -0.11 -1.28 0.60 -154.10 -0.09 -1.37 16 8 C -0.14 -1.26 6.80 37.16 0.25 -1.01 16 9 C 0.53 7.58 6.37 -10.99 -0.07 7.51 16 10 O -0.54 -9.39 15.03 5.56 0.08 -9.30 16 11 N -0.60 -7.98 2.92 -172.46 -0.50 -8.48 16 12 C 0.12 1.64 6.57 -3.60 -0.02 1.62 16 13 C 0.02 0.30 5.18 -3.67 -0.02 0.29 16 14 N -0.51 -7.28 4.82 -235.71 -1.14 -8.42 16 15 C 0.04 0.58 5.83 -4.98 -0.03 0.55 16 16 C 0.41 8.47 7.19 -10.99 -0.08 8.39 16 17 O -0.58 -13.76 11.24 5.54 0.06 -13.70 16 18 N -0.58 -12.95 5.09 -10.96 -0.06 -13.01 16 19 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 20 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -24.90 13.96 55.50 0.77 -24.12 16 23 Si 0.88 18.62 27.74 -169.99 -4.71 13.90 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.14 6.52 56.52 0.37 -4.77 16 27 C 0.02 0.32 5.14 -3.70 -0.02 0.30 16 28 C 0.10 1.14 4.32 -3.60 -0.02 1.12 16 29 H 0.07 0.71 7.71 -51.93 -0.40 0.31 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.59 6.74 -51.93 -0.35 0.24 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.23 6.28 -51.92 -0.33 0.90 16 35 H 0.09 0.80 7.20 -51.93 -0.37 0.43 16 36 H 0.07 0.58 6.49 -51.93 -0.34 0.24 16 37 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.07 0.54 5.34 -51.93 -0.28 0.26 16 39 H 0.09 1.32 7.10 -51.93 -0.37 0.95 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.69 5.52 -51.93 -0.29 1.40 16 42 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 44 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 45 H 0.37 7.28 5.76 -40.82 -0.24 7.04 16 46 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 48 H 0.08 1.33 5.29 -51.93 -0.27 1.05 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.10 0.92 3.12 -51.93 -0.16 0.76 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -32.31 370.52 -7.76 -40.07 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -7.52 Total: 13.84 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.06 Total: 8.88 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.92 Total: -54.03 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.25 Total: -28.25 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.71 Total: 13.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.31 -7.76 -40.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.411 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds