Wall clock time and date at job start Tue Mar 31 2020 23:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.41656 * 2 1 4 4 O 1.44433 * 110.37596 * 237.69429 * 2 1 3 5 5 C 1.44423 * 105.27481 * 200.65411 * 4 2 1 6 6 C 1.54799 * 104.80168 * 40.58660 * 5 4 2 7 7 C 1.54477 * 110.37477 * 122.30967 * 2 1 3 8 8 C 1.52998 * 110.50912 * 24.03334 * 7 2 1 9 9 C 1.50694 * 110.51054 * 261.45651 * 7 2 1 10 10 O 1.21279 * 120.00500 * 8.87251 * 9 7 2 11 11 N 1.34780 * 119.99839 * 188.86632 * 9 7 2 12 12 C 1.47077 * 120.88245 * 175.05520 * 11 9 7 13 13 C 1.53238 * 108.68556 * 231.11196 * 12 11 9 14 14 N 1.46955 * 109.31007 * 306.46895 * 13 12 11 15 15 C 1.46901 * 110.97239 * 187.06498 * 14 13 12 16 16 C 1.50700 * 109.46846 * 298.46967 * 15 14 13 17 17 O 1.21299 * 119.99974 * 3.99452 * 16 15 14 18 18 N 1.34776 * 120.00345 * 184.00172 * 16 15 14 19 19 C 1.37096 * 120.00119 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00438 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99694 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99898 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00163 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47258 * 89.99394 * 23 21 19 25 25 H 1.48496 * 109.47367 * 209.99606 * 23 21 19 26 26 H 1.48497 * 109.47065 * 329.99508 * 23 21 19 27 27 C 1.46899 * 111.44398 * 62.80730 * 14 13 12 28 28 C 1.47077 * 120.88184 * 355.07616 * 11 9 7 29 29 H 1.08994 * 109.47288 * 297.68701 * 1 2 3 30 30 H 1.08995 * 109.47235 * 57.69260 * 1 2 3 31 31 H 1.08999 * 109.46865 * 177.68790 * 1 2 3 32 32 H 1.08998 * 110.37178 * 159.34123 * 5 4 2 33 33 H 1.08999 * 110.37363 * 281.56817 * 5 4 2 34 34 H 1.09007 * 110.55000 * 217.33125 * 6 5 4 35 35 H 1.08995 * 110.61189 * 94.52960 * 6 5 4 36 36 H 1.09003 * 109.46944 * 302.94475 * 8 7 2 37 37 H 1.08999 * 109.47426 * 62.94610 * 8 7 2 38 38 H 1.09001 * 109.46845 * 182.94883 * 8 7 2 39 39 H 1.08998 * 109.62932 * 350.91946 * 12 11 9 40 40 H 1.09005 * 109.63206 * 111.29891 * 12 11 9 41 41 H 1.09000 * 109.49355 * 66.22410 * 13 12 11 42 42 H 1.09001 * 109.49715 * 186.31127 * 13 12 11 43 43 H 1.09002 * 109.47234 * 58.46541 * 15 14 13 44 44 H 1.08995 * 109.47358 * 178.47348 * 15 14 13 45 45 H 0.97003 * 119.99644 * 359.97438 * 18 16 15 46 46 H 0.96997 * 120.00120 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.49335 * 177.02597 * 27 14 13 48 48 H 1.08998 * 109.49068 * 56.94557 * 27 14 13 49 49 H 1.09001 * 109.63410 * 248.50358 * 28 11 9 50 50 H 1.08998 * 109.62999 * 8.89585 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 8 2.0328 -0.7236 -1.1444 5 6 3.3874 -1.0870 -0.7996 6 6 3.3173 -1.5083 0.6883 7 6 2.0678 -0.7740 1.2239 8 6 1.0275 -1.7794 1.7218 9 6 2.4482 0.1801 2.3266 10 8 2.1634 1.3555 2.2366 11 7 3.1049 -0.2729 3.4129 12 6 3.5805 0.6560 4.4493 13 6 5.0623 0.3738 4.7189 14 7 5.2369 -1.0519 5.0293 15 6 6.6140 -1.3321 5.4572 16 6 7.5661 -0.9924 4.3396 17 8 7.1473 -0.4919 3.3171 18 7 8.8830 -1.2447 4.4760 19 6 9.7491 -0.9361 3.4590 20 1 9.3761 -0.4912 2.5484 21 6 11.1068 -1.1958 3.6000 22 7 11.9369 -0.9005 2.6250 23 14 11.7519 -1.9661 5.1748 24 1 11.7356 -3.4453 5.0451 25 1 13.1427 -1.5058 5.4174 26 1 10.8902 -1.5595 6.3138 27 6 4.8562 -1.8998 3.8918 28 6 3.3652 -1.7091 3.5932 29 1 -0.3633 0.4775 0.9099 30 1 -0.3633 0.5492 -0.8685 31 1 -0.3633 -1.0268 -0.0415 32 1 3.7243 -1.9221 -1.4137 33 1 4.0528 -0.2327 -0.9240 34 1 4.2102 -1.1812 1.2212 35 1 3.1930 -2.5876 0.7761 36 1 0.1013 -1.2562 1.9596 37 1 0.8372 -2.5201 0.9451 38 1 1.4029 -2.2781 2.6154 39 1 3.4603 1.6828 4.1039 40 1 3.0072 0.5083 5.3646 41 1 5.6472 0.6248 3.8340 42 1 5.4001 0.9768 5.5617 43 1 6.8521 -0.7289 6.3333 44 1 6.7090 -2.3888 5.7068 45 1 9.2180 -1.6447 5.2938 46 1 12.8847 -1.0821 2.7232 47 1 5.0473 -2.9446 4.1368 48 1 5.4414 -1.6182 3.0164 49 1 2.7736 -2.0868 4.4272 50 1 3.0996 -2.2465 2.6829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113137584.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:07 Heat of formation + Delta-G solvation = -111.764769 kcal Electronic energy + Delta-G solvation = -31880.400169 eV Core-core repulsion = 27714.476994 eV Total energy + Delta-G solvation = -4165.923175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.29833 -40.94579 -39.74913 -38.44229 -36.27409 -35.58334 -34.75831 -33.79760 -32.79547 -31.84375 -30.29747 -28.80033 -27.58123 -26.48179 -25.26549 -24.81015 -23.40883 -23.06447 -21.40865 -21.22144 -20.36300 -19.64401 -18.16358 -17.78077 -17.68857 -16.94866 -16.83427 -16.65196 -16.36549 -16.11482 -15.94637 -15.85951 -15.64775 -15.47890 -15.18475 -14.96610 -14.67220 -14.49421 -14.24393 -13.71566 -13.66808 -13.47489 -13.21747 -13.15590 -13.06215 -12.79533 -12.70878 -12.62633 -12.44702 -12.29087 -12.20525 -12.11441 -12.01315 -11.98462 -11.81366 -11.65202 -11.41831 -11.05193 -10.89374 -10.69077 -10.24458 -9.82198 -9.04428 -8.44575 -6.05225 1.28917 1.33619 1.43156 1.45343 1.87192 1.90723 2.20773 2.73563 2.91346 2.95680 3.13046 3.29717 3.43542 3.53286 3.76237 3.93228 3.99266 4.05788 4.09079 4.14557 4.17686 4.32909 4.34129 4.45673 4.47071 4.55277 4.56905 4.58736 4.61562 4.67373 4.70663 4.75651 4.79253 4.83197 4.85289 4.93945 5.03443 5.11146 5.12401 5.26260 5.28867 5.41738 5.50031 5.72827 5.81153 5.94936 5.97198 6.33355 6.55027 6.86073 7.01500 7.36901 7.93609 8.73085 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.003021 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.281343 B = 9265.642044 C =10113.149558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.050 0.950 4 O -0.377 6.377 5 C 0.040 3.960 6 C -0.144 4.144 7 C -0.104 4.104 8 C -0.140 4.140 9 C 0.523 3.477 10 O -0.583 6.583 11 N -0.604 5.604 12 C 0.125 3.875 13 C 0.026 3.974 14 N -0.495 5.495 15 C 0.047 3.953 16 C 0.416 3.584 17 O -0.614 6.614 18 N -0.587 5.587 19 C -0.327 4.327 20 H 0.051 0.949 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.255 1.255 25 H -0.279 1.279 26 H -0.229 1.229 27 C 0.021 3.979 28 C 0.106 3.894 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.104 0.896 48 H 0.033 0.967 49 H 0.103 0.897 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.311 -8.166 6.787 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 H 0.068 0.932 4 O -0.297 6.297 5 C -0.036 4.036 6 C -0.182 4.182 7 C -0.108 4.108 8 C -0.197 4.197 9 C 0.312 3.688 10 O -0.464 6.464 11 N -0.335 5.335 12 C 0.002 3.998 13 C -0.103 4.103 14 N -0.217 5.217 15 C -0.085 4.085 16 C 0.204 3.796 17 O -0.500 6.500 18 N -0.229 5.229 19 C -0.456 4.456 20 H 0.069 0.931 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.204 1.204 26 H -0.152 1.152 27 C -0.108 4.108 28 C -0.015 4.015 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.051 0.949 49 H 0.121 0.879 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.983 -7.374 6.187 23.999 hybrid contribution 2.272 0.669 -0.364 2.396 sum -19.711 -6.706 5.824 21.620 Atomic orbital electron populations 1.21833 0.90853 1.04037 1.02687 1.22882 0.97116 0.94214 0.83093 0.93231 1.89102 1.27386 1.74629 1.38550 1.23537 0.84038 1.00370 0.95680 1.23284 0.96168 1.02796 0.95917 1.22106 0.98405 0.96391 0.93865 1.22168 0.97136 0.97466 1.02947 1.20772 0.76782 0.88422 0.82790 1.90644 1.56532 1.19477 1.79749 1.48144 1.55220 1.09210 1.20962 1.21629 0.93607 0.93443 0.91119 1.22653 0.96056 0.90047 1.01540 1.62519 1.19471 1.04800 1.34946 1.22333 0.85490 1.05421 0.95238 1.22402 0.83466 0.82709 0.91067 1.90496 1.77069 1.48971 1.33454 1.42245 1.07033 1.56962 1.16611 1.18966 0.89213 1.40379 0.97083 0.93057 1.26162 0.95301 0.97645 1.02372 1.69814 1.04562 1.48263 1.34979 0.85357 0.78846 0.79373 0.77900 1.17967 1.20419 1.15194 1.22735 0.96005 0.98614 0.93412 1.22405 0.95219 0.79640 1.04269 0.90838 0.91781 0.89465 0.86424 0.94111 0.91895 0.86253 0.90742 0.89068 0.89753 0.91073 0.88708 0.94558 0.89115 0.86151 0.85368 0.77457 0.91193 0.87736 0.94896 0.87926 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.33 71.98 0.60 -2.03 16 2 C 0.09 2.15 3.13 31.09 0.10 2.25 16 3 H 0.05 1.58 7.05 -2.38 -0.02 1.57 16 4 O -0.38 -9.86 11.34 -148.98 -1.69 -11.55 16 5 C 0.04 0.98 7.64 72.60 0.55 1.54 16 6 C -0.14 -3.20 4.60 31.72 0.15 -3.05 16 7 C -0.10 -2.33 0.60 -51.92 -0.03 -2.36 16 8 C -0.14 -1.99 6.80 71.98 0.49 -1.50 16 9 C 0.52 15.08 6.37 87.65 0.56 15.64 16 10 O -0.58 -21.23 15.03 -3.03 -0.05 -21.27 16 11 N -0.60 -15.48 2.92 -817.94 -2.39 -17.87 16 12 C 0.12 3.31 6.57 86.35 0.57 3.87 16 13 C 0.03 0.77 5.18 86.37 0.45 1.22 16 14 N -0.50 -12.73 4.82 -899.66 -4.34 -17.07 16 15 C 0.05 1.24 5.83 85.56 0.50 1.74 16 16 C 0.42 17.00 7.19 87.66 0.63 17.63 16 17 O -0.61 -30.88 11.24 -3.09 -0.03 -30.92 16 18 N -0.59 -25.99 5.09 -306.98 -1.56 -27.55 16 19 C -0.33 -18.54 10.16 84.04 0.85 -17.69 16 20 H 0.05 3.51 7.39 -2.91 -0.02 3.49 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 22 N -0.94 -55.80 13.96 21.66 0.30 -55.49 16 23 Si 0.97 37.52 27.74 68.60 1.90 39.43 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 25 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 27 C 0.02 0.52 5.14 86.39 0.44 0.97 16 28 C 0.11 2.05 4.32 86.35 0.37 2.42 16 29 H 0.07 1.39 7.71 -2.39 -0.02 1.37 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.31 6.74 -2.39 -0.02 1.29 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.78 6.28 -2.38 -0.01 1.77 16 35 H 0.12 1.86 7.20 -2.39 -0.02 1.85 16 36 H 0.07 1.01 6.49 -2.39 -0.02 1.00 16 37 H 0.09 1.03 7.87 -2.39 -0.02 1.01 16 38 H 0.08 0.94 5.34 -2.39 -0.01 0.93 16 39 H 0.07 2.16 7.10 -2.39 -0.02 2.15 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.04 1.48 5.52 -2.39 -0.01 1.47 16 42 H 0.09 2.42 8.10 -2.39 -0.02 2.40 16 43 H 0.12 2.64 8.13 -2.39 -0.02 2.62 16 44 H 0.13 2.57 8.10 -2.39 -0.02 2.55 16 45 H 0.39 14.15 5.76 -92.71 -0.53 13.61 16 46 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.10 2.08 8.08 -2.39 -0.02 2.06 16 48 H 0.03 1.15 5.29 -2.39 -0.01 1.14 16 49 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 50 H 0.11 1.79 3.12 -2.39 -0.01 1.78 16 Total: -1.00 -80.34 370.52 -0.78 -81.11 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: 0.38 Total: 40.95 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.70 Total: 20.23 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -7.99 Total: -117.98 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -1.77 Total: -63.74 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 1.90 Total: 39.43 kcal Total: -80.34 -0.78 -81.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137584.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.651 kcal (2) G-P(sol) polarization free energy of solvation -80.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds