Wall clock time and date at job start Tue Mar 31 2020 23:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.86914 * 2 1 4 4 O 1.43752 * 110.00155 * 238.91449 * 2 1 3 5 5 C 1.44379 * 106.97309 * 267.01990 * 4 2 1 6 6 C 1.54999 * 103.48979 * 319.94316 * 5 4 2 7 7 C 1.54094 * 109.87664 * 121.00648 * 2 1 3 8 8 C 1.52998 * 110.48931 * 236.35160 * 7 2 1 9 9 C 1.50703 * 110.48834 * 358.87074 * 7 2 1 10 10 O 1.21280 * 119.99931 * 352.94617 * 9 7 2 11 11 N 1.34772 * 119.99683 * 172.67695 * 9 7 2 12 12 C 1.47074 * 120.88565 * 357.34121 * 11 9 7 13 13 C 1.53704 * 108.27804 * 128.75737 * 12 11 9 14 14 N 1.46897 * 109.25164 * 54.08559 * 13 12 11 15 15 C 1.46909 * 110.99644 * 172.61101 * 14 13 12 16 16 C 1.50696 * 109.47373 * 60.84474 * 15 14 13 17 17 O 1.21296 * 119.99947 * 356.57498 * 16 15 14 18 18 N 1.34773 * 120.00021 * 176.56320 * 16 15 14 19 19 C 1.37104 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99716 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99799 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00447 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99875 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47286 * 59.99469 * 23 21 19 25 25 H 1.48500 * 109.47046 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46788 * 299.99265 * 23 21 19 27 27 C 1.46898 * 111.27019 * 296.75423 * 14 13 12 28 28 C 1.47080 * 120.87972 * 177.62299 * 11 9 7 29 29 H 1.08991 * 109.47041 * 305.09988 * 1 2 3 30 30 H 1.09004 * 109.46956 * 65.09541 * 1 2 3 31 31 H 1.08999 * 109.47070 * 185.09246 * 1 2 3 32 32 H 1.09004 * 110.62079 * 78.44021 * 5 4 2 33 33 H 1.09001 * 110.61932 * 201.44200 * 5 4 2 34 34 H 1.09001 * 110.90487 * 278.82671 * 6 5 4 35 35 H 1.08997 * 110.91073 * 155.22475 * 6 5 4 36 36 H 1.08997 * 109.47319 * 186.31231 * 8 7 2 37 37 H 1.09001 * 109.47194 * 306.31244 * 8 7 2 38 38 H 1.09003 * 109.46970 * 66.30975 * 8 7 2 39 39 H 1.08994 * 109.63577 * 248.52821 * 12 11 9 40 40 H 1.08995 * 109.63082 * 9.10759 * 12 11 9 41 41 H 1.08999 * 109.64821 * 294.08504 * 13 12 11 42 42 H 1.09003 * 109.41992 * 173.94852 * 13 12 11 43 43 H 1.08993 * 109.46950 * 180.85254 * 15 14 13 44 44 H 1.09007 * 109.46543 * 300.84824 * 15 14 13 45 45 H 0.96996 * 119.99846 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00148 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.49200 * 303.14719 * 27 14 13 48 48 H 1.09000 * 109.49088 * 183.06958 * 27 14 13 49 49 H 1.08997 * 109.63052 * 350.89359 * 28 11 9 50 50 H 1.09005 * 109.63186 * 111.28072 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0218 -0.6974 -1.1568 5 6 2.2334 -2.0703 -0.7630 6 6 2.8357 -1.9494 0.6601 7 6 2.0540 -0.7465 1.2421 8 6 2.9829 0.1557 2.0569 9 6 0.9060 -1.2254 2.0929 10 8 -0.2286 -0.8918 1.8239 11 7 1.1397 -2.0288 3.1495 12 6 2.4998 -2.4970 3.4556 13 6 2.7913 -2.1975 4.9348 14 7 1.7314 -2.7840 5.7657 15 6 2.0599 -2.6735 7.1933 16 6 2.1944 -1.2197 7.5668 17 8 2.0940 -0.3628 6.7143 18 7 2.4259 -0.8718 8.8481 19 6 2.5477 0.4508 9.1880 20 1 2.4577 1.2139 8.4290 21 6 2.7869 0.8095 10.5088 22 7 2.8959 -0.1190 11.4325 23 14 2.9522 2.6116 10.9720 24 1 1.6984 3.3284 10.6271 25 1 3.2022 2.7267 12.4313 26 1 4.0871 3.2123 10.2261 27 6 0.4276 -2.1720 5.4767 28 6 0.0402 -2.4655 4.0234 29 1 -0.3633 0.5909 0.8407 30 1 -0.3633 0.4328 -0.9321 31 1 -0.3633 -1.0236 0.0912 32 1 1.2877 -2.6117 -0.7348 33 1 2.9367 -2.5590 -1.4372 34 1 3.9031 -1.7338 0.6136 35 1 2.6476 -2.8528 1.2402 36 1 3.4309 -0.4205 2.8664 37 1 3.7689 0.5463 1.4106 38 1 2.4105 0.9842 2.4742 39 1 2.5669 -3.5700 3.2761 40 1 3.2182 -1.9721 2.8260 41 1 2.8214 -1.1192 5.0913 42 1 3.7520 -2.6325 5.2102 43 1 1.2659 -3.1288 7.7851 44 1 3.0005 -3.1878 7.3905 45 1 2.5063 -1.5572 9.5298 46 1 3.0625 0.1315 12.3547 47 1 0.4907 -1.0940 5.6257 48 1 -0.3259 -2.5885 6.1452 49 1 -0.8684 -1.9197 3.7694 50 1 -0.1270 -3.5349 3.8950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113137585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:11 Heat of formation + Delta-G solvation = -54.343558 kcal Electronic energy + Delta-G solvation = -31886.407199 eV Core-core repulsion = 27722.973995 eV Total energy + Delta-G solvation = -4163.433205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51535 -39.47647 -38.38398 -37.13815 -34.97327 -34.04395 -33.51504 -31.42404 -31.14730 -30.79041 -29.02043 -28.53996 -25.95566 -24.70245 -23.98876 -23.84323 -22.52207 -21.75136 -20.56308 -19.53495 -18.88282 -17.92223 -16.86234 -16.72667 -16.38181 -16.11409 -15.41016 -15.07067 -15.02745 -14.81862 -14.77645 -14.52593 -14.29408 -14.07138 -13.78197 -13.67429 -13.58648 -13.21433 -13.11828 -12.93246 -12.41645 -12.06513 -11.94096 -11.84331 -11.67609 -11.56241 -11.43787 -11.27860 -11.22361 -10.96984 -10.91456 -10.72225 -10.71142 -10.66106 -10.52600 -10.32817 -9.81518 -9.55883 -9.34783 -8.74780 -8.53805 -8.08706 -7.52685 -6.53304 -3.95078 2.54186 2.94436 3.10749 3.18540 3.22423 3.67450 3.73102 4.07769 4.14546 4.18911 4.29448 4.52536 4.63727 4.87161 4.91646 4.96013 5.02850 5.08869 5.19262 5.25835 5.31847 5.34930 5.41830 5.45508 5.47360 5.52459 5.58895 5.60193 5.65079 5.69598 5.77218 5.88307 5.91879 5.96663 6.01338 6.02422 6.12107 6.21559 6.39876 6.46663 6.59075 6.66452 6.76750 7.13261 7.27569 7.43308 7.45761 7.92218 8.17885 8.46755 9.04664 9.40154 9.90282 10.62979 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002811 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.393060 B = 9958.602569 C =10540.177505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 H 0.097 0.903 4 O -0.371 6.371 5 C 0.047 3.953 6 C -0.152 4.152 7 C -0.109 4.109 8 C -0.144 4.144 9 C 0.521 3.479 10 O -0.528 6.528 11 N -0.600 5.600 12 C 0.098 3.902 13 C 0.018 3.982 14 N -0.512 5.512 15 C 0.041 3.959 16 C 0.403 3.597 17 O -0.595 6.595 18 N -0.554 5.554 19 C -0.304 4.304 20 H 0.102 0.898 21 C 0.026 3.974 22 N -0.897 5.897 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 C 0.027 3.973 28 C 0.121 3.879 29 H 0.084 0.916 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.393 0.607 46 H 0.274 0.726 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -7.692 -17.031 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.115 0.885 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.189 4.189 7 C -0.113 4.113 8 C -0.201 4.201 9 C 0.310 3.690 10 O -0.406 6.406 11 N -0.333 5.333 12 C -0.024 4.024 13 C -0.110 4.110 14 N -0.235 5.235 15 C -0.090 4.090 16 C 0.189 3.811 17 O -0.482 6.482 18 N -0.188 5.188 19 C -0.434 4.434 20 H 0.120 0.880 21 C -0.177 4.177 22 N -0.538 5.538 23 Si 0.757 3.243 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.198 1.198 27 C -0.101 4.101 28 C -0.001 4.001 29 H 0.103 0.897 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.226 0.774 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.109 0.891 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.094 -7.346 -17.825 19.280 hybrid contribution 0.286 1.069 1.498 1.863 sum 0.380 -6.277 -16.327 17.496 Atomic orbital electron populations 1.22707 0.93412 1.04263 0.99662 1.22788 0.95629 0.95916 0.82376 0.88514 1.88906 1.86055 1.20606 1.33476 1.23524 0.99815 0.84831 0.94813 1.23505 1.00842 0.97701 0.96897 1.22058 0.95274 0.97379 0.96566 1.22050 0.98607 0.99507 0.99916 1.20372 0.90047 0.77838 0.80723 1.90895 1.24668 1.57091 1.67970 1.48212 1.09032 1.48584 1.27500 1.22407 0.83427 0.99615 0.96986 1.22872 0.94420 1.02619 0.91124 1.62454 1.02557 1.54897 1.03634 1.22056 1.02810 0.94723 0.89447 1.21062 0.85176 0.91101 0.83745 1.90406 1.57483 1.51849 1.48474 1.42048 1.60830 1.08707 1.07259 1.19657 1.46262 0.83685 0.93805 0.88028 1.25291 0.96913 1.00059 0.95422 1.69599 1.48497 1.33396 1.02285 0.85923 0.79107 0.81948 0.77310 1.19842 1.20844 1.19837 1.22618 0.91256 1.01230 0.95022 1.21684 0.90013 0.99649 0.88781 0.89715 0.95598 0.90822 0.92283 0.88749 0.89068 0.89211 0.90516 0.91029 0.91367 0.91235 0.88598 0.89219 0.90718 0.89278 0.89174 0.77357 0.91624 0.90664 0.90514 0.89145 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.74 37.16 0.29 -1.64 16 2 C 0.09 1.09 3.75 -26.16 -0.10 0.99 16 3 H 0.10 1.09 7.69 -51.93 -0.40 0.69 16 4 O -0.37 -4.52 11.20 -35.23 -0.39 -4.91 16 5 C 0.05 0.44 7.67 38.21 0.29 0.73 16 6 C -0.15 -1.33 4.80 -24.72 -0.12 -1.45 16 7 C -0.11 -1.22 0.62 -154.13 -0.10 -1.32 16 8 C -0.14 -1.55 7.96 37.16 0.30 -1.25 16 9 C 0.52 7.13 6.28 -10.99 -0.07 7.06 16 10 O -0.53 -8.43 10.09 5.56 0.06 -8.37 16 11 N -0.60 -7.86 2.98 -172.19 -0.51 -8.37 16 12 C 0.10 1.11 4.20 -3.36 -0.01 1.10 16 13 C 0.02 0.26 5.07 -3.46 -0.02 0.24 16 14 N -0.51 -7.65 4.83 -235.46 -1.14 -8.79 16 15 C 0.04 0.67 5.83 -4.97 -0.03 0.64 16 16 C 0.40 8.69 7.19 -10.99 -0.08 8.61 16 17 O -0.59 -14.38 11.23 5.54 0.06 -14.32 16 18 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 19 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 20 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -23.65 13.05 55.50 0.72 -22.92 16 23 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 27 C 0.03 0.42 5.19 -3.70 -0.02 0.40 16 28 C 0.12 1.64 6.59 -3.60 -0.02 1.61 16 29 H 0.08 1.25 6.47 -51.89 -0.34 0.91 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.08 6.17 -52.66 -0.33 0.75 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 35 H 0.09 0.74 5.74 -51.93 -0.30 0.44 16 36 H 0.08 0.84 5.32 -51.93 -0.28 0.56 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 40 H 0.10 0.93 3.11 -51.93 -0.16 0.77 16 41 H 0.09 1.63 5.51 -51.93 -0.29 1.34 16 42 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 44 H 0.09 1.31 8.13 -51.92 -0.42 0.89 16 45 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 48 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 49 H 0.09 1.29 7.08 -51.93 -0.37 0.92 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -30.33 371.16 -8.25 -38.58 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.64 Total: 13.32 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.07 Total: 8.02 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.98 Total: -53.38 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.28 Total: -27.60 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.33 -8.25 -38.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.762 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds