Wall clock time and date at job start Tue Mar 31 2020 23:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.86914 * 2 1 4 4 O 1.43752 * 110.00155 * 238.91449 * 2 1 3 5 5 C 1.44379 * 106.97309 * 267.01990 * 4 2 1 6 6 C 1.54999 * 103.48979 * 319.94316 * 5 4 2 7 7 C 1.54094 * 109.87664 * 121.00648 * 2 1 3 8 8 C 1.52998 * 110.48931 * 236.35160 * 7 2 1 9 9 C 1.50703 * 110.48834 * 358.87074 * 7 2 1 10 10 O 1.21280 * 119.99931 * 352.94617 * 9 7 2 11 11 N 1.34772 * 119.99683 * 172.67695 * 9 7 2 12 12 C 1.47074 * 120.88565 * 357.34121 * 11 9 7 13 13 C 1.53704 * 108.27804 * 128.75737 * 12 11 9 14 14 N 1.46897 * 109.25164 * 54.08559 * 13 12 11 15 15 C 1.46909 * 110.99644 * 172.61101 * 14 13 12 16 16 C 1.50696 * 109.47373 * 60.84474 * 15 14 13 17 17 O 1.21296 * 119.99947 * 356.57498 * 16 15 14 18 18 N 1.34773 * 120.00021 * 176.56320 * 16 15 14 19 19 C 1.37104 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99716 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99799 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00447 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99875 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47286 * 59.99469 * 23 21 19 25 25 H 1.48500 * 109.47046 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46788 * 299.99265 * 23 21 19 27 27 C 1.46898 * 111.27019 * 296.75423 * 14 13 12 28 28 C 1.47080 * 120.87972 * 177.62299 * 11 9 7 29 29 H 1.08991 * 109.47041 * 305.09988 * 1 2 3 30 30 H 1.09004 * 109.46956 * 65.09541 * 1 2 3 31 31 H 1.08999 * 109.47070 * 185.09246 * 1 2 3 32 32 H 1.09004 * 110.62079 * 78.44021 * 5 4 2 33 33 H 1.09001 * 110.61932 * 201.44200 * 5 4 2 34 34 H 1.09001 * 110.90487 * 278.82671 * 6 5 4 35 35 H 1.08997 * 110.91073 * 155.22475 * 6 5 4 36 36 H 1.08997 * 109.47319 * 186.31231 * 8 7 2 37 37 H 1.09001 * 109.47194 * 306.31244 * 8 7 2 38 38 H 1.09003 * 109.46970 * 66.30975 * 8 7 2 39 39 H 1.08994 * 109.63577 * 248.52821 * 12 11 9 40 40 H 1.08995 * 109.63082 * 9.10759 * 12 11 9 41 41 H 1.08999 * 109.64821 * 294.08504 * 13 12 11 42 42 H 1.09003 * 109.41992 * 173.94852 * 13 12 11 43 43 H 1.08993 * 109.46950 * 180.85254 * 15 14 13 44 44 H 1.09007 * 109.46543 * 300.84824 * 15 14 13 45 45 H 0.96996 * 119.99846 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00148 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.49200 * 303.14719 * 27 14 13 48 48 H 1.09000 * 109.49088 * 183.06958 * 27 14 13 49 49 H 1.08997 * 109.63052 * 350.89359 * 28 11 9 50 50 H 1.09005 * 109.63186 * 111.28072 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0218 -0.6974 -1.1568 5 6 2.2334 -2.0703 -0.7630 6 6 2.8357 -1.9494 0.6601 7 6 2.0540 -0.7465 1.2421 8 6 2.9829 0.1557 2.0569 9 6 0.9060 -1.2254 2.0929 10 8 -0.2286 -0.8918 1.8239 11 7 1.1397 -2.0288 3.1495 12 6 2.4998 -2.4970 3.4556 13 6 2.7913 -2.1975 4.9348 14 7 1.7314 -2.7840 5.7657 15 6 2.0599 -2.6735 7.1933 16 6 2.1944 -1.2197 7.5668 17 8 2.0940 -0.3628 6.7143 18 7 2.4259 -0.8718 8.8481 19 6 2.5477 0.4508 9.1880 20 1 2.4577 1.2139 8.4290 21 6 2.7869 0.8095 10.5088 22 7 2.8959 -0.1190 11.4325 23 14 2.9522 2.6116 10.9720 24 1 1.6984 3.3284 10.6271 25 1 3.2022 2.7267 12.4313 26 1 4.0871 3.2123 10.2261 27 6 0.4276 -2.1720 5.4767 28 6 0.0402 -2.4655 4.0234 29 1 -0.3633 0.5909 0.8407 30 1 -0.3633 0.4328 -0.9321 31 1 -0.3633 -1.0236 0.0912 32 1 1.2877 -2.6117 -0.7348 33 1 2.9367 -2.5590 -1.4372 34 1 3.9031 -1.7338 0.6136 35 1 2.6476 -2.8528 1.2402 36 1 3.4309 -0.4205 2.8664 37 1 3.7689 0.5463 1.4106 38 1 2.4105 0.9842 2.4742 39 1 2.5669 -3.5700 3.2761 40 1 3.2182 -1.9721 2.8260 41 1 2.8214 -1.1192 5.0913 42 1 3.7520 -2.6325 5.2102 43 1 1.2659 -3.1288 7.7851 44 1 3.0005 -3.1878 7.3905 45 1 2.5063 -1.5572 9.5298 46 1 3.0625 0.1315 12.3547 47 1 0.4907 -1.0940 5.6257 48 1 -0.3259 -2.5885 6.1452 49 1 -0.8684 -1.9197 3.7694 50 1 -0.1270 -3.5349 3.8950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113137585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:10 Heat of formation + Delta-G solvation = -77.134539 kcal Electronic energy + Delta-G solvation = -31887.395490 eV Core-core repulsion = 27722.973995 eV Total energy + Delta-G solvation = -4164.421496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.50295 -40.88527 -39.56294 -38.45520 -36.33649 -35.60555 -34.65172 -33.33106 -32.14109 -31.82631 -30.19877 -29.56101 -27.48244 -25.94592 -25.22110 -24.95474 -23.57277 -22.66720 -21.70604 -21.12036 -20.20044 -19.66575 -17.92031 -17.76462 -17.64700 -17.37813 -16.62242 -16.44945 -16.25692 -16.13489 -16.00530 -15.68755 -15.60988 -15.28646 -15.23876 -15.05251 -14.72763 -14.21292 -14.13409 -13.97678 -13.59335 -13.44858 -13.20607 -13.05076 -12.99578 -12.86350 -12.69756 -12.47661 -12.43824 -12.21137 -12.14764 -12.07742 -12.05149 -11.91448 -11.66716 -11.58894 -11.39779 -10.98232 -10.70324 -10.01342 -9.86541 -9.64491 -9.00842 -8.48511 -5.98259 1.34990 1.38423 1.48272 1.49102 1.92726 2.00602 2.26290 2.83304 2.95924 3.17783 3.24978 3.30605 3.36321 3.68028 3.76898 3.96574 4.02047 4.09623 4.17720 4.24420 4.32054 4.35181 4.38269 4.45461 4.53876 4.57958 4.58968 4.61284 4.69620 4.71687 4.73231 4.74351 4.80225 4.87749 4.95689 5.03002 5.08090 5.11744 5.18466 5.31666 5.36952 5.40470 5.57632 5.80915 5.88470 5.99568 6.02321 6.40336 6.56748 7.09760 7.11881 7.53745 8.08772 8.66486 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002811 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.393060 B = 9958.602569 C =10540.177505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.090 3.910 3 H 0.102 0.898 4 O -0.384 6.384 5 C 0.041 3.959 6 C -0.144 4.144 7 C -0.106 4.106 8 C -0.140 4.140 9 C 0.513 3.487 10 O -0.558 6.558 11 N -0.604 5.604 12 C 0.104 3.896 13 C 0.017 3.983 14 N -0.496 5.496 15 C 0.050 3.950 16 C 0.407 3.593 17 O -0.621 6.621 18 N -0.569 5.569 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.987 3.013 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.033 3.967 28 C 0.127 3.873 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.028 0.972 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -9.506 -17.919 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.032 3.968 3 H 0.120 0.880 4 O -0.304 6.304 5 C -0.035 4.035 6 C -0.181 4.181 7 C -0.109 4.109 8 C -0.197 4.197 9 C 0.303 3.697 10 O -0.439 6.439 11 N -0.336 5.336 12 C -0.017 4.017 13 C -0.112 4.112 14 N -0.219 5.219 15 C -0.082 4.082 16 C 0.194 3.806 17 O -0.510 6.510 18 N -0.206 5.206 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.811 3.189 24 H -0.201 1.201 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.096 4.096 28 C 0.004 3.996 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.135 0.865 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.046 0.954 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.657 -9.189 -18.721 20.921 hybrid contribution -0.248 1.608 1.687 2.344 sum 1.408 -7.581 -17.034 18.698 Atomic orbital electron populations 1.22527 0.94883 1.02957 0.98703 1.22747 0.94435 0.96581 0.83020 0.87985 1.88894 1.85904 1.22023 1.33553 1.23734 1.00282 0.83580 0.95873 1.23553 1.01677 0.96691 0.96181 1.22038 0.94613 0.98509 0.95743 1.22028 0.98730 0.98700 1.00207 1.20913 0.90412 0.77402 0.80990 1.90894 1.26064 1.57940 1.68954 1.48319 1.09693 1.48408 1.27177 1.22535 0.82735 1.01445 0.95023 1.22887 0.95109 1.00075 0.93120 1.62563 1.02477 1.53912 1.02921 1.22172 1.04941 0.90675 0.90411 1.22192 0.82470 0.93386 0.82544 1.90431 1.57640 1.53740 1.49146 1.42121 1.62404 1.07819 1.08252 1.19566 1.48107 0.84715 0.93883 0.90619 1.25973 0.96327 1.03739 0.94978 1.69654 1.48890 1.34756 1.02525 0.85070 0.78766 0.77495 0.77527 1.20090 1.19458 1.19665 1.22529 0.92019 0.98286 0.96792 1.21591 0.89757 1.00767 0.87478 0.91734 0.95537 0.92149 0.93063 0.86040 0.86675 0.88144 0.90542 0.88708 0.93766 0.88422 0.86755 0.93387 0.88894 0.87304 0.86523 0.76995 0.91261 0.95382 0.89469 0.90549 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 7.74 71.98 0.56 -3.13 16 2 C 0.09 2.11 3.75 30.97 0.12 2.22 16 3 H 0.10 2.24 7.69 -2.39 -0.02 2.22 16 4 O -0.38 -8.68 11.20 -148.98 -1.67 -10.35 16 5 C 0.04 0.67 7.67 72.67 0.56 1.23 16 6 C -0.14 -2.05 4.80 31.90 0.15 -1.90 16 7 C -0.11 -2.22 0.62 -51.94 -0.03 -2.26 16 8 C -0.14 -2.86 7.96 71.98 0.57 -2.29 16 9 C 0.51 13.88 6.28 87.66 0.55 14.43 16 10 O -0.56 -18.39 10.09 -3.03 -0.03 -18.42 16 11 N -0.60 -15.11 2.98 -817.07 -2.43 -17.54 16 12 C 0.10 2.08 4.20 86.51 0.36 2.44 16 13 C 0.02 0.45 5.07 86.54 0.44 0.89 16 14 N -0.50 -13.91 4.83 -898.85 -4.34 -18.25 16 15 C 0.05 1.52 5.83 85.55 0.50 2.02 16 16 C 0.41 17.67 7.19 87.66 0.63 18.30 16 17 O -0.62 -31.10 11.23 -3.08 -0.03 -31.13 16 18 N -0.57 -27.71 5.29 -306.99 -1.62 -29.33 16 19 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 20 H 0.08 4.47 7.16 -2.91 -0.02 4.45 16 21 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 22 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 23 Si 0.99 42.28 29.55 68.60 2.03 44.31 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 C 0.03 1.00 5.19 86.38 0.45 1.45 16 28 C 0.13 3.32 6.59 86.35 0.57 3.89 16 29 H 0.06 2.02 6.47 -4.62 -0.03 1.99 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.81 6.17 -16.86 -0.10 1.71 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.15 7.88 -2.39 -0.02 1.13 16 35 H 0.10 1.25 5.74 -2.39 -0.01 1.23 16 36 H 0.08 1.56 5.32 -2.39 -0.01 1.55 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.50 8.01 -2.39 -0.02 1.48 16 40 H 0.11 1.86 3.11 -2.39 -0.01 1.85 16 41 H 0.05 1.75 5.51 -2.39 -0.01 1.74 16 42 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 43 H 0.11 2.97 8.09 -2.39 -0.02 2.95 16 44 H 0.12 3.04 8.13 -2.38 -0.02 3.02 16 45 H 0.40 18.39 7.90 -92.71 -0.73 17.66 16 46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.03 1.14 5.95 -2.38 -0.01 1.12 16 48 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 49 H 0.08 2.23 7.08 -2.39 -0.02 2.21 16 50 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -68.85 371.16 -0.98 -69.83 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: 0.14 Total: 39.23 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.70 Total: 19.76 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -8.11 Total: -113.24 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -1.73 Total: -59.89 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -68.85 -0.98 -69.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.302 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds