Wall clock time and date at job start Tue Mar 31 2020 23:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.48591 * 2 1 4 4 C 1.53088 * 109.48211 * 239.97598 * 2 1 3 5 5 C 1.53199 * 109.15301 * 182.40930 * 4 2 1 6 6 H 1.09004 * 109.53865 * 297.10578 * 5 4 2 7 7 C 1.50702 * 109.61380 * 176.89072 * 5 4 2 8 8 O 1.21284 * 119.99977 * 335.96139 * 7 5 4 9 9 N 1.34776 * 120.00029 * 155.97204 * 7 5 4 10 10 C 1.47080 * 120.87979 * 184.91351 * 9 7 5 11 11 C 1.53692 * 108.28044 * 128.75258 * 10 9 7 12 12 N 1.46894 * 109.25990 * 54.07798 * 11 10 9 13 13 C 1.46903 * 111.00321 * 172.61221 * 12 11 10 14 14 C 1.50699 * 109.46971 * 294.30005 * 13 12 11 15 15 O 1.21301 * 120.00121 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00063 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99773 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00723 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99789 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00133 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00182 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46948 * 59.99690 * 21 19 17 23 23 H 1.48499 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46899 * 300.00178 * 21 19 17 25 25 C 1.46908 * 111.26911 * 296.76279 * 12 11 10 26 26 C 1.47074 * 120.88292 * 5.18046 * 9 7 5 27 27 C 1.53177 * 109.04551 * 56.97327 * 5 4 2 28 28 C 1.53094 * 109.16186 * 303.02268 * 27 5 4 29 29 O 1.42899 * 109.41526 * 57.60696 * 28 27 5 30 30 H 1.09005 * 109.47385 * 299.99865 * 1 2 3 31 31 H 1.08998 * 109.47294 * 59.99769 * 1 2 3 32 32 H 1.09007 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.52286 * 302.30349 * 4 2 1 34 34 H 1.09006 * 109.52189 * 62.48876 * 4 2 1 35 35 H 1.09006 * 109.62681 * 248.51959 * 10 9 7 36 36 H 1.09001 * 109.62952 * 9.09559 * 10 9 7 37 37 H 1.09006 * 109.64422 * 294.07362 * 11 10 9 38 38 H 1.09000 * 109.44985 * 173.96381 * 11 10 9 39 39 H 1.08997 * 109.46817 * 54.29836 * 13 12 11 40 40 H 1.09003 * 109.46893 * 174.30625 * 13 12 11 41 41 H 0.96997 * 119.99820 * 359.97438 * 16 14 13 42 42 H 0.97000 * 120.00094 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.48995 * 303.14153 * 25 12 11 44 44 H 1.09000 * 109.49101 * 183.06164 * 25 12 11 45 45 H 1.09000 * 109.62957 * 350.90614 * 26 9 7 46 46 H 1.09007 * 109.62740 * 111.28530 * 26 9 7 47 47 H 1.08996 * 109.52323 * 183.11082 * 27 5 4 48 48 H 1.09005 * 109.51630 * 62.92536 * 27 5 4 49 49 H 1.09001 * 109.47824 * 297.62419 * 28 27 5 50 50 H 1.09000 * 109.48006 * 177.58857 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5712 -0.7706 -1.2119 6 1 3.9689 0.2439 -1.2405 7 6 4.0822 -1.5460 -2.3988 8 8 3.3691 -2.3630 -2.9420 9 7 5.3316 -1.3319 -2.8565 10 6 5.8132 -1.9977 -4.0763 11 6 6.4003 -0.9274 -5.0101 12 7 7.4159 -0.1543 -4.2829 13 6 8.1258 0.7622 -5.1852 14 6 8.9207 -0.0348 -6.1871 15 8 8.8978 -1.2471 -6.1532 16 7 9.6564 0.5993 -7.1215 17 6 10.3792 -0.1258 -8.0332 18 1 10.3594 -1.2051 -8.0026 19 6 11.1380 0.5281 -8.9962 20 7 11.1626 1.8415 -9.0333 21 14 12.1235 -0.4599 -10.2382 22 1 11.2052 -1.3193 -11.0277 23 1 12.8416 0.4665 -11.1499 24 1 13.1075 -1.3123 -9.5238 25 6 6.8234 0.5735 -3.1527 26 6 6.2516 -0.4306 -2.1462 27 6 4.0178 -1.4597 0.0812 28 6 3.4307 -0.7090 1.2793 29 8 2.0066 -0.6741 1.1665 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6444 -1.7375 -1.2710 34 1 1.7146 -0.1842 -2.1399 35 1 6.5835 -2.7242 -3.8171 36 1 4.9826 -2.5013 -4.5709 37 1 5.6071 -0.2599 -5.3468 38 1 6.8595 -1.4105 -5.8725 39 1 7.4035 1.3878 -5.7095 40 1 8.7999 1.3929 -4.6056 41 1 9.6739 1.5688 -7.1493 42 1 11.6920 2.2979 -9.7058 43 1 6.0243 1.2201 -3.5152 44 1 7.5897 1.1783 -2.6678 45 1 5.7111 0.1024 -1.3641 46 1 7.0614 -1.0097 -1.7021 47 1 5.1060 -1.4493 0.1424 48 1 3.6616 -2.4899 0.0866 49 1 3.8190 0.3094 1.2960 50 1 3.7099 -1.2199 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113459268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:58 Heat of formation + Delta-G solvation = -110.370154 kcal Electronic energy + Delta-G solvation = -30262.476847 eV Core-core repulsion = 26096.614147 eV Total energy + Delta-G solvation = -4165.862700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.85184 -39.40874 -38.54824 -37.28454 -34.65549 -34.03703 -33.74561 -33.12641 -31.31582 -31.05298 -28.99269 -28.23430 -26.04667 -25.12164 -23.94398 -23.56644 -22.94856 -21.43229 -20.46770 -19.30124 -18.91021 -17.92721 -17.41268 -16.70530 -16.49124 -16.06996 -15.84547 -15.45060 -15.16555 -14.91999 -14.81894 -14.66759 -14.36204 -14.24451 -13.89695 -13.82587 -13.64713 -13.41010 -12.94513 -12.76277 -12.70074 -12.49095 -12.26046 -12.05949 -11.79008 -11.57391 -11.55761 -11.50935 -11.36157 -11.17596 -11.14294 -11.00470 -10.89258 -10.77170 -10.46605 -10.24721 -10.13379 -9.60917 -9.49002 -8.90052 -8.41982 -8.03053 -7.94107 -6.45192 -3.86156 2.46901 2.82243 3.17721 3.23885 3.28061 3.39067 3.83266 3.87471 4.13883 4.19265 4.26531 4.36145 4.52026 4.65713 4.77012 4.81133 4.88786 4.94086 4.97222 5.03204 5.09494 5.12889 5.20646 5.23215 5.27162 5.29711 5.39346 5.40438 5.50958 5.57716 5.60729 5.65499 5.72092 5.73383 5.78353 5.81182 5.85689 5.95084 6.09768 6.18615 6.20847 6.48779 6.86460 7.08510 7.25382 7.33854 7.51801 8.02138 8.04611 8.57365 9.14225 9.50008 10.01347 10.72299 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.001961 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.046168 B =14274.481059 C =14426.218351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.132 4.132 5 C -0.110 4.110 6 H 0.093 0.907 7 C 0.520 3.480 8 O -0.542 6.542 9 N -0.611 5.611 10 C 0.120 3.880 11 C 0.041 3.959 12 N -0.514 5.514 13 C 0.047 3.953 14 C 0.442 3.558 15 O -0.578 6.578 16 N -0.562 5.562 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.039 3.961 26 C 0.111 3.889 27 C -0.146 4.146 28 C 0.065 3.935 29 O -0.379 6.379 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.052 0.948 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 2.049 19.518 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.170 4.170 5 C -0.131 4.131 6 H 0.111 0.889 7 C 0.308 3.692 8 O -0.419 6.419 9 N -0.344 5.344 10 C -0.002 4.002 11 C -0.088 4.088 12 N -0.239 5.239 13 C -0.084 4.084 14 C 0.227 3.773 15 O -0.462 6.462 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.091 4.091 26 C -0.012 4.012 27 C -0.184 4.184 28 C -0.012 4.012 29 O -0.299 6.299 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.788 0.512 19.419 25.032 hybrid contribution 0.444 1.076 -1.287 1.735 sum -15.344 1.588 18.132 23.806 Atomic orbital electron populations 1.21757 0.92792 1.03193 1.02465 1.22117 0.95347 0.94802 0.84786 0.92379 1.22104 0.92985 1.03427 0.98466 1.21395 0.97659 1.00146 0.93903 0.88920 1.20492 0.81023 0.82955 0.84779 1.90686 1.56503 1.35187 1.59501 1.48280 1.12623 1.46170 1.27366 1.21850 0.99155 0.95033 0.84154 1.22739 0.92512 0.95602 0.97906 1.61508 1.27459 1.25268 1.09672 1.21849 0.97485 0.94186 0.94908 1.19705 0.84743 0.88609 0.84209 1.90488 1.67307 1.13791 1.74632 1.41861 1.41367 1.09303 1.27353 1.19647 1.22701 0.93033 1.07530 0.87919 1.25271 0.98144 0.95802 0.98706 1.69603 1.41553 1.07052 1.36068 0.85913 0.79561 0.78931 0.79794 1.19895 1.20982 1.19872 1.22502 0.98263 0.95089 0.93197 1.21917 0.93054 0.91912 0.94333 1.22191 1.01658 1.01214 0.93373 1.22545 0.81117 0.99521 0.97969 1.87947 1.20845 1.78041 1.43028 0.91778 0.90958 0.91617 0.89588 0.90569 0.90313 0.89045 0.95542 0.86635 0.93459 0.89188 0.77496 0.91796 0.94706 0.89432 0.89620 0.90138 0.90119 0.90147 0.92931 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.56 37.15 0.36 -0.62 16 2 C 0.09 0.68 3.26 -26.69 -0.09 0.59 16 3 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.13 -1.21 4.29 -26.58 -0.11 -1.32 16 5 C -0.11 -0.98 1.74 -91.58 -0.16 -1.14 16 6 H 0.09 0.67 6.52 -51.93 -0.34 0.33 16 7 C 0.52 6.58 6.83 -10.98 -0.08 6.50 16 8 O -0.54 -8.88 15.51 5.55 0.09 -8.79 16 9 N -0.61 -7.54 3.00 -172.19 -0.52 -8.06 16 10 C 0.12 1.75 6.61 -3.37 -0.02 1.73 16 11 C 0.04 0.65 5.27 -3.47 -0.02 0.63 16 12 N -0.51 -7.98 4.37 -235.47 -1.03 -9.01 16 13 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 14 C 0.44 10.02 7.44 -10.99 -0.08 9.94 16 15 O -0.58 -14.94 13.91 5.54 0.08 -14.87 16 16 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 17 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 19 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 20 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 21 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 26 C 0.11 1.07 5.98 -3.61 -0.02 1.05 16 27 C -0.15 -1.12 5.24 -26.59 -0.14 -1.26 16 28 C 0.07 0.44 6.84 37.21 0.25 0.69 16 29 O -0.38 -3.44 10.41 -35.23 -0.37 -3.80 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.09 0.95 7.78 -51.93 -0.40 0.55 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.38 7.10 -51.93 -0.37 1.01 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 2.24 5.76 -51.93 -0.30 1.94 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.09 1.34 7.97 -51.93 -0.41 0.92 16 41 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.82 7.99 -51.93 -0.41 0.41 16 45 H 0.09 0.57 5.17 -51.93 -0.27 0.30 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.52 7.33 -51.93 -0.38 0.14 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -32.79 390.55 -8.83 -41.62 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.22 Total: 8.42 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -0.40 Total: 10.14 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.88 Total: -54.39 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.20 Total: -27.46 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.79 -8.83 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113459268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.746 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds