Wall clock time and date at job start Tue Mar 31 2020 23:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.48591 * 2 1 4 4 C 1.53088 * 109.48211 * 239.97598 * 2 1 3 5 5 C 1.53199 * 109.15301 * 182.40930 * 4 2 1 6 6 H 1.09004 * 109.53865 * 297.10578 * 5 4 2 7 7 C 1.50702 * 109.61380 * 176.89072 * 5 4 2 8 8 O 1.21284 * 119.99977 * 335.96139 * 7 5 4 9 9 N 1.34776 * 120.00029 * 155.97204 * 7 5 4 10 10 C 1.47080 * 120.87979 * 184.91351 * 9 7 5 11 11 C 1.53692 * 108.28044 * 128.75258 * 10 9 7 12 12 N 1.46894 * 109.25990 * 54.07798 * 11 10 9 13 13 C 1.46903 * 111.00321 * 172.61221 * 12 11 10 14 14 C 1.50699 * 109.46971 * 294.30005 * 13 12 11 15 15 O 1.21301 * 120.00121 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00063 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99773 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00723 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99789 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00133 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00182 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46948 * 59.99690 * 21 19 17 23 23 H 1.48499 * 109.47223 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46899 * 300.00178 * 21 19 17 25 25 C 1.46908 * 111.26911 * 296.76279 * 12 11 10 26 26 C 1.47074 * 120.88292 * 5.18046 * 9 7 5 27 27 C 1.53177 * 109.04551 * 56.97327 * 5 4 2 28 28 C 1.53094 * 109.16186 * 303.02268 * 27 5 4 29 29 O 1.42899 * 109.41526 * 57.60696 * 28 27 5 30 30 H 1.09005 * 109.47385 * 299.99865 * 1 2 3 31 31 H 1.08998 * 109.47294 * 59.99769 * 1 2 3 32 32 H 1.09007 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.52286 * 302.30349 * 4 2 1 34 34 H 1.09006 * 109.52189 * 62.48876 * 4 2 1 35 35 H 1.09006 * 109.62681 * 248.51959 * 10 9 7 36 36 H 1.09001 * 109.62952 * 9.09559 * 10 9 7 37 37 H 1.09006 * 109.64422 * 294.07362 * 11 10 9 38 38 H 1.09000 * 109.44985 * 173.96381 * 11 10 9 39 39 H 1.08997 * 109.46817 * 54.29836 * 13 12 11 40 40 H 1.09003 * 109.46893 * 174.30625 * 13 12 11 41 41 H 0.96997 * 119.99820 * 359.97438 * 16 14 13 42 42 H 0.97000 * 120.00094 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.48995 * 303.14153 * 25 12 11 44 44 H 1.09000 * 109.49101 * 183.06164 * 25 12 11 45 45 H 1.09000 * 109.62957 * 350.90614 * 26 9 7 46 46 H 1.09007 * 109.62740 * 111.28530 * 26 9 7 47 47 H 1.08996 * 109.52323 * 183.11082 * 27 5 4 48 48 H 1.09005 * 109.51630 * 62.92536 * 27 5 4 49 49 H 1.09001 * 109.47824 * 297.62419 * 28 27 5 50 50 H 1.09000 * 109.48006 * 177.58857 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5712 -0.7706 -1.2119 6 1 3.9689 0.2439 -1.2405 7 6 4.0822 -1.5460 -2.3988 8 8 3.3691 -2.3630 -2.9420 9 7 5.3316 -1.3319 -2.8565 10 6 5.8132 -1.9977 -4.0763 11 6 6.4003 -0.9274 -5.0101 12 7 7.4159 -0.1543 -4.2829 13 6 8.1258 0.7622 -5.1852 14 6 8.9207 -0.0348 -6.1871 15 8 8.8978 -1.2471 -6.1532 16 7 9.6564 0.5993 -7.1215 17 6 10.3792 -0.1258 -8.0332 18 1 10.3594 -1.2051 -8.0026 19 6 11.1380 0.5281 -8.9962 20 7 11.1626 1.8415 -9.0333 21 14 12.1235 -0.4599 -10.2382 22 1 11.2052 -1.3193 -11.0277 23 1 12.8416 0.4665 -11.1499 24 1 13.1075 -1.3123 -9.5238 25 6 6.8234 0.5735 -3.1527 26 6 6.2516 -0.4306 -2.1462 27 6 4.0178 -1.4597 0.0812 28 6 3.4307 -0.7090 1.2793 29 8 2.0066 -0.6741 1.1665 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6444 -1.7375 -1.2710 34 1 1.7146 -0.1842 -2.1399 35 1 6.5835 -2.7242 -3.8171 36 1 4.9826 -2.5013 -4.5709 37 1 5.6071 -0.2599 -5.3468 38 1 6.8595 -1.4105 -5.8725 39 1 7.4035 1.3878 -5.7095 40 1 8.7999 1.3929 -4.6056 41 1 9.6739 1.5688 -7.1493 42 1 11.6920 2.2979 -9.7058 43 1 6.0243 1.2201 -3.5152 44 1 7.5897 1.1783 -2.6678 45 1 5.7111 0.1024 -1.3641 46 1 7.0614 -1.0097 -1.7021 47 1 5.1060 -1.4493 0.1424 48 1 3.6616 -2.4899 0.0866 49 1 3.8190 0.3094 1.2960 50 1 3.7099 -1.2199 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113459268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:56 Heat of formation + Delta-G solvation = -134.696597 kcal Electronic energy + Delta-G solvation = -30263.531721 eV Core-core repulsion = 26096.614147 eV Total energy + Delta-G solvation = -4166.917574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.75721 -40.52006 -39.79458 -38.60564 -36.09992 -35.48034 -34.73628 -33.69853 -33.26544 -32.10169 -30.24231 -28.87507 -27.47516 -26.19242 -25.34701 -24.52754 -23.64226 -22.30831 -21.30810 -21.00278 -19.94556 -19.81336 -18.37696 -17.78597 -17.30074 -17.21477 -16.78219 -16.60610 -16.47245 -16.16682 -16.08677 -15.57055 -15.46461 -15.41828 -15.30401 -15.06339 -14.81998 -14.40150 -14.01431 -13.79539 -13.53104 -13.52805 -13.29054 -13.13001 -12.99894 -12.81304 -12.78792 -12.50072 -12.43612 -12.31388 -12.28438 -12.15653 -12.09421 -12.04506 -11.74406 -11.45667 -11.41335 -10.91324 -10.42751 -10.28333 -9.99994 -9.80429 -9.22903 -8.46026 -5.94153 1.39394 1.41549 1.49650 1.51942 1.85301 2.06713 2.28367 2.72042 2.87080 3.20955 3.33121 3.36607 3.60949 3.71726 3.82683 3.93013 3.96223 4.08190 4.11188 4.18860 4.22856 4.29537 4.40888 4.42158 4.46060 4.49435 4.50982 4.57445 4.58535 4.67768 4.72127 4.78097 4.82179 4.84090 4.87494 4.98590 5.02698 5.05931 5.09866 5.24185 5.32607 5.38940 5.41496 5.80292 6.02403 6.15256 6.33588 6.37637 6.61612 7.06013 7.14053 7.57950 8.13833 8.70968 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.001961 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.046168 B =14274.481059 C =14426.218351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 H 0.080 0.920 4 C -0.130 4.130 5 C -0.102 4.102 6 H 0.124 0.876 7 C 0.515 3.485 8 O -0.588 6.588 9 N -0.610 5.610 10 C 0.128 3.872 11 C 0.051 3.949 12 N -0.531 5.531 13 C 0.060 3.940 14 C 0.439 3.561 15 O -0.614 6.614 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.037 3.963 26 C 0.109 3.891 27 C -0.142 4.142 28 C 0.063 3.937 29 O -0.401 6.401 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.045 0.955 44 H 0.116 0.884 45 H 0.127 0.873 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.545 4.409 21.603 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.098 0.902 4 C -0.168 4.168 5 C -0.123 4.123 6 H 0.142 0.858 7 C 0.305 3.695 8 O -0.469 6.469 9 N -0.342 5.342 10 C 0.005 3.995 11 C -0.078 4.078 12 N -0.256 5.256 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.501 6.501 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.091 4.091 26 C -0.012 4.012 27 C -0.180 4.180 28 C -0.013 4.013 29 O -0.320 6.320 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.102 0.898 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.609 2.910 21.540 26.760 hybrid contribution 0.347 0.292 -1.890 1.944 sum -15.262 3.203 19.650 25.086 Atomic orbital electron populations 1.21789 0.92486 1.02656 1.03390 1.22178 0.95739 0.95334 0.83565 0.90234 1.22074 0.93288 1.01984 0.99478 1.21448 0.97362 1.01017 0.92463 0.85798 1.21238 0.80501 0.82476 0.85251 1.90668 1.57733 1.37321 1.61147 1.48358 1.13107 1.46210 1.26540 1.21529 0.98194 0.94562 0.85220 1.22467 0.92410 0.95851 0.97066 1.61467 1.27900 1.26044 1.10212 1.21728 0.97663 0.93569 0.94126 1.20825 0.83715 0.88664 0.84110 1.90473 1.68175 1.15904 1.75499 1.41929 1.42044 1.09362 1.27837 1.19592 1.24643 0.92366 1.09456 0.90382 1.26002 0.98581 0.96852 0.99861 1.69660 1.41909 1.07875 1.36639 0.85024 0.78115 0.77776 0.77643 1.19911 1.19535 1.19748 1.22699 0.99340 0.95411 0.91635 1.22194 0.93090 0.91449 0.94499 1.22194 1.02794 0.99893 0.93141 1.22727 0.79949 1.00889 0.97727 1.87934 1.22352 1.78438 1.43315 0.91044 0.89827 0.92936 0.92540 0.90677 0.91512 0.90463 0.95218 0.90742 0.91762 0.86249 0.77006 0.91352 0.93636 0.86633 0.85534 0.89784 0.88231 0.92649 0.90407 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.56 71.98 0.69 -1.07 16 2 C 0.09 1.19 3.26 30.62 0.10 1.29 16 3 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.13 -2.23 4.29 30.69 0.13 -2.10 16 5 C -0.10 -1.58 1.74 -11.41 -0.02 -1.60 16 6 H 0.12 1.16 6.52 -2.39 -0.02 1.15 16 7 C 0.52 12.60 6.83 87.66 0.60 13.20 16 8 O -0.59 -19.90 15.51 -3.04 -0.05 -19.95 16 9 N -0.61 -14.18 3.00 -817.06 -2.45 -16.64 16 10 C 0.13 3.83 6.61 86.50 0.57 4.40 16 11 C 0.05 1.65 5.27 86.54 0.46 2.10 16 12 N -0.53 -15.57 4.37 -898.88 -3.93 -19.50 16 13 C 0.06 1.91 5.45 85.56 0.47 2.38 16 14 C 0.44 20.14 7.44 87.66 0.65 20.80 16 15 O -0.61 -32.90 13.91 -3.09 -0.04 -32.94 16 16 N -0.57 -28.72 5.29 -306.98 -1.62 -30.35 16 17 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 20 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 21 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.04 0.67 5.62 86.38 0.49 1.16 16 26 C 0.11 1.70 5.98 86.35 0.52 2.21 16 27 C -0.14 -1.82 5.24 30.68 0.16 -1.66 16 28 C 0.06 0.64 6.84 72.01 0.49 1.13 16 29 O -0.40 -6.37 10.41 -148.98 -1.55 -7.92 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 1.30 7.78 -2.38 -0.02 1.28 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 2.50 7.10 -2.39 -0.02 2.48 16 37 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 3.04 5.76 -2.39 -0.01 3.03 16 39 H 0.06 1.87 8.12 -2.39 -0.02 1.85 16 40 H 0.12 3.15 7.97 -2.39 -0.02 3.13 16 41 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 42 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.12 1.54 7.99 -2.39 -0.02 1.52 16 45 H 0.13 0.95 5.17 -2.39 -0.01 0.94 16 46 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.10 0.90 7.33 -2.39 -0.02 0.88 16 48 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.15 390.55 -0.54 -75.69 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.21 Total: 31.29 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 6.58 Total: 24.28 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -7.72 Total: -115.21 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.64 Total: -60.81 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -75.15 -0.54 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113459268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.008 kcal (2) G-P(sol) polarization free energy of solvation -75.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds