Wall clock time and date at job start Tue Mar 31 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.48317 * 2 1 4 4 C 1.53093 * 109.47945 * 239.97940 * 2 1 3 5 5 C 1.53177 * 109.16162 * 182.39939 * 4 2 1 6 6 H 1.09002 * 109.54066 * 176.84660 * 5 4 2 7 7 C 1.50697 * 109.54168 * 297.01841 * 5 4 2 8 8 O 1.21278 * 120.00201 * 6.89572 * 7 5 4 9 9 N 1.34780 * 120.00072 * 186.89204 * 7 5 4 10 10 C 1.47076 * 120.88031 * 4.65325 * 9 7 5 11 11 C 1.53693 * 108.28087 * 128.75440 * 10 9 7 12 12 N 1.46903 * 109.25414 * 54.08009 * 11 10 9 13 13 C 1.46903 * 110.99862 * 172.61264 * 12 11 10 14 14 C 1.50699 * 109.46994 * 59.24991 * 13 12 11 15 15 O 1.21293 * 120.00632 * 6.19467 * 14 13 12 16 16 N 1.34780 * 119.99653 * 186.19096 * 14 13 12 17 17 C 1.37104 * 119.99842 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99837 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99850 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00248 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46684 * 89.99847 * 21 19 17 23 23 H 1.48495 * 109.47338 * 209.99607 * 21 19 17 24 24 H 1.48497 * 109.47001 * 330.00367 * 21 19 17 25 25 C 1.46898 * 111.27089 * 296.75889 * 12 11 10 26 26 C 1.47082 * 120.88205 * 184.92919 * 9 7 5 27 27 C 1.53177 * 109.04044 * 56.97943 * 5 4 2 28 28 C 1.53092 * 109.16057 * 303.02043 * 27 5 4 29 29 O 1.42904 * 109.48381 * 120.02485 * 2 1 3 30 30 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47047 * 299.99526 * 1 2 3 32 32 H 1.09002 * 109.47356 * 59.99829 * 1 2 3 33 33 H 1.09000 * 109.52095 * 302.30295 * 4 2 1 34 34 H 1.08999 * 109.52227 * 62.42862 * 4 2 1 35 35 H 1.09001 * 109.63045 * 248.52226 * 10 9 7 36 36 H 1.08999 * 109.63278 * 9.10140 * 10 9 7 37 37 H 1.09003 * 109.64695 * 294.08524 * 11 10 9 38 38 H 1.08998 * 109.42998 * 173.94771 * 11 10 9 39 39 H 1.08996 * 109.47243 * 179.24896 * 13 12 11 40 40 H 1.09000 * 109.47173 * 299.24810 * 13 12 11 41 41 H 0.96998 * 120.00172 * 0.02562 * 16 14 13 42 42 H 0.96995 * 120.00391 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.49218 * 303.14770 * 25 12 11 44 44 H 1.09002 * 109.49427 * 183.06557 * 25 12 11 45 45 H 1.08998 * 109.62542 * 350.89864 * 26 9 7 46 46 H 1.08998 * 109.62666 * 111.28261 * 26 9 7 47 47 H 1.09002 * 109.52154 * 62.92679 * 27 5 4 48 48 H 1.09003 * 109.52434 * 183.11482 * 27 5 4 49 49 H 1.09000 * 109.47630 * 177.59312 * 28 27 5 50 50 H 1.09006 * 109.47970 * 297.60955 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7221 -1.2497 5 6 3.5710 -0.7705 -1.2124 6 1 3.9390 -1.3322 -2.0710 7 6 4.1208 0.6319 -1.2543 8 8 3.3687 1.5806 -1.1824 9 7 5.4485 0.8320 -1.3715 10 6 6.3685 -0.2995 -1.5621 11 6 7.2626 0.0049 -2.7745 12 7 7.9131 1.3079 -2.5817 13 6 8.9095 1.5594 -3.6315 14 6 8.2364 1.5331 -4.9796 15 8 7.0295 1.4379 -5.0532 16 7 8.9756 1.6156 -6.1035 17 6 8.3633 1.5912 -7.3300 18 1 7.2887 1.5063 -7.3954 19 6 9.1254 1.6756 -8.4888 20 7 10.4331 1.7784 -8.4092 21 14 8.2913 1.6417 -10.1599 22 1 7.9578 3.0281 -10.5748 23 1 9.2070 1.0330 -11.1579 24 1 7.0459 0.8373 -10.0752 25 6 6.9250 2.3933 -2.5230 26 6 6.0164 2.1872 -1.3064 27 6 4.0178 -1.4597 0.0805 28 6 3.4309 -0.7091 1.2788 29 8 2.0066 -0.6741 1.1664 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6443 -1.7373 -1.2711 34 1 1.7136 -0.1847 -2.1399 35 1 6.9844 -0.4247 -0.6714 36 1 5.7970 -1.2092 -1.7462 37 1 6.6560 0.0317 -3.6797 38 1 8.0227 -0.7706 -2.8684 39 1 9.3663 2.5361 -3.4725 40 1 9.6789 0.7881 -3.5944 41 1 9.9408 1.6914 -6.0448 42 1 10.9651 1.8377 -9.2180 43 1 6.3230 2.3867 -3.4318 44 1 7.4401 3.3498 -2.4344 45 1 5.2119 2.9224 -1.3214 46 1 6.5962 2.2976 -0.3900 47 1 3.6617 -2.4899 0.0860 48 1 5.1061 -1.4493 0.1416 49 1 3.7104 -1.2201 2.2001 50 1 3.8195 0.3092 1.2957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113459269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:03 Heat of formation + Delta-G solvation = -106.517914 kcal Electronic energy + Delta-G solvation = -31238.898673 eV Core-core repulsion = 27073.203018 eV Total energy + Delta-G solvation = -4165.695654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99388 -39.41860 -38.32992 -36.94811 -34.70049 -33.99691 -33.56571 -32.78953 -31.40085 -30.93417 -28.84403 -28.04932 -25.90475 -24.89771 -23.95344 -23.40399 -22.74044 -21.62002 -20.41391 -19.45216 -18.64408 -17.89463 -17.00499 -16.43587 -16.31866 -16.11852 -15.88842 -15.39892 -14.99608 -14.82985 -14.63334 -14.58056 -14.29878 -14.13707 -13.85387 -13.67714 -13.54006 -13.22145 -12.76833 -12.57024 -12.51464 -12.26808 -12.11121 -11.98321 -11.81910 -11.59044 -11.53387 -11.27036 -11.24320 -11.06158 -10.92494 -10.85508 -10.72852 -10.54937 -10.47651 -10.32746 -9.81594 -9.55977 -9.34942 -9.22137 -8.63535 -8.08037 -7.53245 -6.52853 -3.94454 2.59489 2.96684 3.09108 3.19472 3.24772 3.66666 3.73656 4.08276 4.18066 4.31517 4.43668 4.57191 4.75608 4.76642 4.89839 5.03494 5.06809 5.08490 5.18738 5.23800 5.32123 5.33002 5.39376 5.42987 5.46588 5.55048 5.56134 5.60860 5.63723 5.73921 5.74330 5.81188 5.85287 5.89383 5.93099 5.99005 6.03406 6.12835 6.15426 6.41741 6.52822 6.61123 7.13644 7.15731 7.27756 7.44091 7.45204 7.93109 8.16999 8.47415 9.05404 9.40831 9.91059 10.63536 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002548 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.916599 B =10986.945464 C =11747.930383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.113 4.113 6 H 0.101 0.899 7 C 0.521 3.479 8 O -0.543 6.543 9 N -0.604 5.604 10 C 0.113 3.887 11 C 0.022 3.978 12 N -0.512 5.512 13 C 0.042 3.958 14 C 0.403 3.597 15 O -0.594 6.594 16 N -0.554 5.554 17 C -0.303 4.303 18 H 0.102 0.898 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.930 3.070 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.270 1.270 25 C 0.025 3.975 26 C 0.120 3.880 27 C -0.148 4.148 28 C 0.063 3.937 29 O -0.383 6.383 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 -6.033 17.374 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.134 4.134 6 H 0.119 0.881 7 C 0.309 3.691 8 O -0.421 6.421 9 N -0.337 5.337 10 C -0.010 4.010 11 C -0.107 4.107 12 N -0.236 5.236 13 C -0.090 4.090 14 C 0.189 3.811 15 O -0.482 6.482 16 N -0.189 5.189 17 C -0.433 4.433 18 H 0.120 0.880 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.757 3.243 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.104 4.104 26 C -0.003 4.003 27 C -0.186 4.186 28 C -0.014 4.014 29 O -0.303 6.303 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.226 0.774 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.006 -5.668 17.790 20.729 hybrid contribution 0.433 0.086 -2.065 2.112 sum -8.572 -5.582 15.725 18.759 Atomic orbital electron populations 1.21736 0.93492 1.02313 1.02342 1.22475 0.94724 0.97403 0.83965 0.89123 1.22001 0.92795 1.01751 0.99935 1.21405 0.97571 0.94168 1.00290 0.88132 1.20538 0.81707 0.91238 0.75595 1.90596 1.56870 1.43980 1.50634 1.48111 1.05931 1.08348 1.71306 1.22042 0.91614 0.88545 0.98775 1.22775 0.97997 0.91631 0.98285 1.62453 1.15381 1.02413 1.43320 1.22054 0.95174 1.03197 0.88571 1.21070 0.88355 0.85232 0.86435 1.90426 1.14244 1.56740 1.86772 1.42059 1.09482 1.62230 1.05161 1.19705 0.94179 1.47525 0.81905 0.87999 1.25293 0.95378 0.96943 1.00125 1.69603 1.04441 1.49451 1.30275 0.85863 0.78932 0.78610 0.80944 1.20305 1.20792 1.19409 1.22672 0.94514 0.94193 0.98999 1.21702 0.96800 0.83527 0.98227 1.22264 1.01815 1.00577 0.93971 1.22492 0.81641 0.99491 0.97803 1.87876 1.20398 1.78331 1.43687 0.92310 0.92105 0.91113 0.90670 0.90247 0.90966 0.89742 0.90070 0.90482 0.89162 0.89250 0.77351 0.91689 0.90064 0.90600 0.89142 0.91465 0.89821 0.90004 0.88803 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.56 37.15 0.36 -1.04 16 2 C 0.07 0.85 2.98 -26.69 -0.08 0.77 16 3 H 0.09 1.29 5.57 -51.93 -0.29 1.00 16 4 C -0.13 -1.41 4.58 -26.59 -0.12 -1.53 16 5 C -0.11 -1.24 2.18 -91.59 -0.20 -1.44 16 6 H 0.10 1.02 7.08 -51.93 -0.37 0.65 16 7 C 0.52 7.26 5.76 -10.99 -0.06 7.20 16 8 O -0.54 -9.09 13.10 5.56 0.07 -9.01 16 9 N -0.60 -8.06 3.00 -172.19 -0.52 -8.58 16 10 C 0.11 1.29 5.11 -3.37 -0.02 1.28 16 11 C 0.02 0.32 5.13 -3.46 -0.02 0.30 16 12 N -0.51 -7.79 4.83 -235.46 -1.14 -8.93 16 13 C 0.04 0.69 5.84 -4.97 -0.03 0.66 16 14 C 0.40 8.82 7.18 -10.98 -0.08 8.74 16 15 O -0.59 -14.73 11.26 5.55 0.06 -14.67 16 16 N -0.55 -13.39 5.29 -10.96 -0.06 -13.45 16 17 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 19 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -23.75 13.05 55.50 0.72 -23.02 16 21 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 C 0.02 0.39 5.21 -3.70 -0.02 0.37 16 26 C 0.12 1.65 6.61 -3.60 -0.02 1.63 16 27 C -0.15 -1.31 5.31 -26.59 -0.14 -1.45 16 28 C 0.06 0.63 6.62 37.20 0.25 0.88 16 29 O -0.38 -4.65 10.41 -35.23 -0.37 -5.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.08 0.81 5.24 -51.93 -0.27 0.53 16 37 H 0.08 1.53 5.72 -51.93 -0.30 1.23 16 38 H 0.08 1.03 8.11 -51.93 -0.42 0.60 16 39 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.08 1.63 5.75 -51.93 -0.30 1.33 16 44 H 0.08 1.10 8.05 -51.93 -0.42 0.69 16 45 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.63 6.08 -51.93 -0.32 0.31 16 49 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.05 0.55 7.38 -51.93 -0.38 0.16 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -31.24 377.86 -8.88 -40.13 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.90 Total: 12.69 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.43 Total: 8.59 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.99 Total: -53.98 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.23 Total: -28.71 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.24 -8.88 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113459269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.392 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds