Wall clock time and date at job start Tue Mar 31 2020 23:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.48317 * 2 1 4 4 C 1.53093 * 109.47945 * 239.97940 * 2 1 3 5 5 C 1.53177 * 109.16162 * 182.39939 * 4 2 1 6 6 H 1.09002 * 109.54066 * 176.84660 * 5 4 2 7 7 C 1.50697 * 109.54168 * 297.01841 * 5 4 2 8 8 O 1.21278 * 120.00201 * 6.89572 * 7 5 4 9 9 N 1.34780 * 120.00072 * 186.89204 * 7 5 4 10 10 C 1.47076 * 120.88031 * 4.65325 * 9 7 5 11 11 C 1.53693 * 108.28087 * 128.75440 * 10 9 7 12 12 N 1.46903 * 109.25414 * 54.08009 * 11 10 9 13 13 C 1.46903 * 110.99862 * 172.61264 * 12 11 10 14 14 C 1.50699 * 109.46994 * 59.24991 * 13 12 11 15 15 O 1.21293 * 120.00632 * 6.19467 * 14 13 12 16 16 N 1.34780 * 119.99653 * 186.19096 * 14 13 12 17 17 C 1.37104 * 119.99842 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99837 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99850 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00248 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46684 * 89.99847 * 21 19 17 23 23 H 1.48495 * 109.47338 * 209.99607 * 21 19 17 24 24 H 1.48497 * 109.47001 * 330.00367 * 21 19 17 25 25 C 1.46898 * 111.27089 * 296.75889 * 12 11 10 26 26 C 1.47082 * 120.88205 * 184.92919 * 9 7 5 27 27 C 1.53177 * 109.04044 * 56.97943 * 5 4 2 28 28 C 1.53092 * 109.16057 * 303.02043 * 27 5 4 29 29 O 1.42904 * 109.48381 * 120.02485 * 2 1 3 30 30 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47047 * 299.99526 * 1 2 3 32 32 H 1.09002 * 109.47356 * 59.99829 * 1 2 3 33 33 H 1.09000 * 109.52095 * 302.30295 * 4 2 1 34 34 H 1.08999 * 109.52227 * 62.42862 * 4 2 1 35 35 H 1.09001 * 109.63045 * 248.52226 * 10 9 7 36 36 H 1.08999 * 109.63278 * 9.10140 * 10 9 7 37 37 H 1.09003 * 109.64695 * 294.08524 * 11 10 9 38 38 H 1.08998 * 109.42998 * 173.94771 * 11 10 9 39 39 H 1.08996 * 109.47243 * 179.24896 * 13 12 11 40 40 H 1.09000 * 109.47173 * 299.24810 * 13 12 11 41 41 H 0.96998 * 120.00172 * 0.02562 * 16 14 13 42 42 H 0.96995 * 120.00391 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.49218 * 303.14770 * 25 12 11 44 44 H 1.09002 * 109.49427 * 183.06557 * 25 12 11 45 45 H 1.08998 * 109.62542 * 350.89864 * 26 9 7 46 46 H 1.08998 * 109.62666 * 111.28261 * 26 9 7 47 47 H 1.09002 * 109.52154 * 62.92679 * 27 5 4 48 48 H 1.09003 * 109.52434 * 183.11482 * 27 5 4 49 49 H 1.09000 * 109.47630 * 177.59312 * 28 27 5 50 50 H 1.09006 * 109.47970 * 297.60955 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7221 -1.2497 5 6 3.5710 -0.7705 -1.2124 6 1 3.9390 -1.3322 -2.0710 7 6 4.1208 0.6319 -1.2543 8 8 3.3687 1.5806 -1.1824 9 7 5.4485 0.8320 -1.3715 10 6 6.3685 -0.2995 -1.5621 11 6 7.2626 0.0049 -2.7745 12 7 7.9131 1.3079 -2.5817 13 6 8.9095 1.5594 -3.6315 14 6 8.2364 1.5331 -4.9796 15 8 7.0295 1.4379 -5.0532 16 7 8.9756 1.6156 -6.1035 17 6 8.3633 1.5912 -7.3300 18 1 7.2887 1.5063 -7.3954 19 6 9.1254 1.6756 -8.4888 20 7 10.4331 1.7784 -8.4092 21 14 8.2913 1.6417 -10.1599 22 1 7.9578 3.0281 -10.5748 23 1 9.2070 1.0330 -11.1579 24 1 7.0459 0.8373 -10.0752 25 6 6.9250 2.3933 -2.5230 26 6 6.0164 2.1872 -1.3064 27 6 4.0178 -1.4597 0.0805 28 6 3.4309 -0.7091 1.2788 29 8 2.0066 -0.6741 1.1664 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6443 -1.7373 -1.2711 34 1 1.7136 -0.1847 -2.1399 35 1 6.9844 -0.4247 -0.6714 36 1 5.7970 -1.2092 -1.7462 37 1 6.6560 0.0317 -3.6797 38 1 8.0227 -0.7706 -2.8684 39 1 9.3663 2.5361 -3.4725 40 1 9.6789 0.7881 -3.5944 41 1 9.9408 1.6914 -6.0448 42 1 10.9651 1.8377 -9.2180 43 1 6.3230 2.3867 -3.4318 44 1 7.4401 3.3498 -2.4344 45 1 5.2119 2.9224 -1.3214 46 1 6.5962 2.2976 -0.3900 47 1 3.6617 -2.4899 0.0860 48 1 5.1061 -1.4493 0.1416 49 1 3.7104 -1.2201 2.2001 50 1 3.8195 0.3092 1.2957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113459269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:02 Heat of formation + Delta-G solvation = -129.884217 kcal Electronic energy + Delta-G solvation = -31239.911912 eV Core-core repulsion = 27073.203018 eV Total energy + Delta-G solvation = -4166.708893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.00698 -40.83623 -39.51733 -38.28866 -36.19744 -35.44217 -34.66878 -33.64132 -33.33615 -32.05240 -30.16202 -28.86914 -27.44900 -26.05098 -25.33373 -24.47785 -23.67222 -22.62949 -21.56767 -21.07439 -20.06045 -19.51677 -18.08429 -17.80156 -17.32891 -17.20268 -16.93156 -16.64215 -16.37062 -16.20297 -16.11754 -15.69494 -15.50540 -15.43011 -15.32083 -14.92948 -14.72274 -14.40006 -13.75204 -13.62330 -13.48354 -13.39492 -13.33904 -13.13334 -13.01925 -12.93644 -12.79126 -12.69694 -12.48030 -12.25144 -12.15081 -12.13016 -12.05965 -12.00736 -11.71511 -11.46429 -11.41112 -11.01274 -10.75829 -10.19315 -10.02713 -9.76550 -9.04337 -8.49853 -5.99599 1.32495 1.37647 1.49301 1.53884 1.94440 1.98883 2.25444 2.85301 2.93610 3.16340 3.23426 3.37633 3.61888 3.75255 3.86746 3.95286 4.01631 4.05650 4.16459 4.29313 4.32498 4.34222 4.42976 4.46207 4.53989 4.57660 4.59800 4.65275 4.67568 4.68566 4.73428 4.78144 4.79778 4.84751 4.94360 5.03315 5.06365 5.10990 5.21615 5.25706 5.28924 5.37892 5.46804 5.79977 5.98006 5.99981 6.30374 6.39547 6.55349 7.08516 7.10870 7.52075 8.07390 8.65399 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002548 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.916599 B =10986.945464 C =11747.930383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.061 0.939 4 C -0.126 4.126 5 C -0.112 4.112 6 H 0.112 0.888 7 C 0.512 3.488 8 O -0.579 6.579 9 N -0.608 5.608 10 C 0.118 3.882 11 C 0.020 3.980 12 N -0.496 5.496 13 C 0.050 3.950 14 C 0.406 3.594 15 O -0.624 6.624 16 N -0.569 5.569 17 C -0.333 4.333 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.916 5.916 21 Si 0.988 3.012 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.275 1.275 25 C 0.030 3.970 26 C 0.126 3.874 27 C -0.139 4.139 28 C 0.056 3.944 29 O -0.394 6.394 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.035 0.965 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.032 0.968 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.118 0.882 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 -7.842 18.833 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 H 0.079 0.921 4 C -0.164 4.164 5 C -0.133 4.133 6 H 0.130 0.870 7 C 0.302 3.698 8 O -0.460 6.460 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.109 4.109 12 N -0.218 5.218 13 C -0.081 4.081 14 C 0.193 3.807 15 O -0.513 6.513 16 N -0.206 5.206 17 C -0.463 4.463 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.557 5.557 21 Si 0.812 3.188 22 H -0.199 1.199 23 H -0.193 1.193 24 H -0.200 1.200 25 C -0.099 4.099 26 C 0.003 3.997 27 C -0.177 4.177 28 C -0.020 4.020 29 O -0.314 6.314 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.111 0.889 47 H 0.122 0.878 48 H 0.118 0.882 49 H 0.136 0.864 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.062 -7.491 19.269 22.190 hybrid contribution 0.111 0.684 -2.443 2.539 sum -7.950 -6.808 16.826 19.815 Atomic orbital electron populations 1.21733 0.92275 1.03107 1.02545 1.22388 0.95789 0.95961 0.84488 0.92135 1.21995 0.93185 1.02424 0.98799 1.21483 0.97300 0.92370 1.02142 0.87001 1.21170 0.81604 0.92233 0.74759 1.90589 1.57754 1.45446 1.52213 1.48256 1.06234 1.08668 1.70874 1.22203 0.91308 0.88493 0.98379 1.22811 0.98365 0.91735 0.97967 1.62565 1.14930 1.02552 1.41759 1.22175 0.95543 1.05376 0.85049 1.22211 0.88047 0.82533 0.87881 1.90448 1.16063 1.57086 1.87666 1.42127 1.09682 1.63692 1.05059 1.19585 0.93261 1.49563 0.83858 0.90773 1.25982 0.95995 0.96257 1.02796 1.69654 1.05104 1.49670 1.31280 0.85002 0.77936 0.78596 0.77267 1.19876 1.19328 1.19982 1.22570 0.94393 0.95156 0.97762 1.21598 0.96103 0.83867 0.98156 1.22269 1.02842 1.00883 0.91684 1.22679 0.80670 0.99013 0.99641 1.87860 1.21729 1.78107 1.43721 0.91130 0.92096 0.90800 0.88685 0.91846 0.87913 0.87490 0.94699 0.88589 0.87144 0.86529 0.76924 0.91225 0.94945 0.89495 0.90803 0.88900 0.87811 0.88181 0.86402 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.56 71.98 0.69 -2.02 16 2 C 0.07 1.68 2.98 30.62 0.09 1.77 16 3 H 0.06 1.81 5.57 -2.39 -0.01 1.80 16 4 C -0.13 -2.70 4.58 30.68 0.14 -2.56 16 5 C -0.11 -2.28 2.18 -11.42 -0.02 -2.30 16 6 H 0.11 2.03 7.08 -2.39 -0.02 2.01 16 7 C 0.51 14.19 5.76 87.66 0.50 14.69 16 8 O -0.58 -20.22 13.10 -3.02 -0.04 -20.26 16 9 N -0.61 -15.59 3.00 -817.07 -2.45 -18.05 16 10 C 0.12 2.37 5.11 86.50 0.44 2.81 16 11 C 0.02 0.55 5.13 86.54 0.44 1.00 16 12 N -0.50 -14.21 4.83 -898.87 -4.34 -18.55 16 13 C 0.05 1.57 5.84 85.56 0.50 2.07 16 14 C 0.41 17.99 7.18 87.66 0.63 18.62 16 15 O -0.62 -32.18 11.26 -3.07 -0.03 -32.22 16 16 N -0.57 -28.00 5.29 -306.98 -1.62 -29.62 16 17 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 18 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 19 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 20 N -0.92 -48.46 13.05 21.66 0.28 -48.17 16 21 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C 0.03 0.94 5.21 86.38 0.45 1.39 16 26 C 0.13 3.39 6.61 86.35 0.57 3.96 16 27 C -0.14 -2.01 5.31 30.68 0.16 -1.85 16 28 C 0.06 1.02 6.62 72.01 0.48 1.50 16 29 O -0.39 -9.09 10.41 -148.98 -1.55 -10.64 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 35 H 0.10 1.53 8.11 -2.39 -0.02 1.51 16 36 H 0.11 1.67 5.24 -2.39 -0.01 1.66 16 37 H 0.03 1.32 5.72 -2.39 -0.01 1.31 16 38 H 0.10 2.29 8.11 -2.39 -0.02 2.27 16 39 H 0.11 3.07 8.06 -2.39 -0.02 3.05 16 40 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 42 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.03 1.36 5.75 -2.38 -0.01 1.34 16 44 H 0.09 2.48 8.05 -2.39 -0.02 2.46 16 45 H 0.07 2.24 7.04 -2.39 -0.02 2.23 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.10 1.09 6.08 -2.39 -0.01 1.08 16 49 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.03 0.63 7.38 -2.38 -0.02 0.61 16 Total: -1.00 -71.58 377.86 -1.15 -72.72 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: 0.23 Total: 38.89 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 6.36 Total: 21.34 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -8.13 Total: -114.39 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.62 Total: -63.12 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.58 -1.15 -72.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113459269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.160 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds