Wall clock time and date at job start Tue Mar 31 2020 23:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49708 * 2 1 4 4 C 1.52760 * 109.59126 * 240.04613 * 2 1 3 5 5 N 1.46934 * 109.00605 * 185.53803 * 4 2 1 6 6 C 1.34776 * 120.62664 * 233.57994 * 5 4 2 7 7 O 1.21351 * 119.99933 * 6.77835 * 6 5 4 8 8 C 1.49450 * 119.99765 * 186.77249 * 6 5 4 9 9 O 1.21344 * 120.00176 * 353.93948 * 8 6 5 10 10 N 1.34771 * 119.99804 * 173.93764 * 8 6 5 11 11 C 1.47081 * 120.88047 * 172.78219 * 10 8 6 12 12 C 1.53237 * 108.52315 * 129.08673 * 11 10 8 13 13 N 1.46899 * 109.34215 * 53.82999 * 12 11 10 14 14 C 1.46897 * 111.00156 * 172.74871 * 13 12 11 15 15 C 1.50697 * 109.47356 * 59.30515 * 14 13 12 16 16 H 1.07994 * 119.99605 * 5.01446 * 15 14 13 17 17 C 1.37876 * 119.99988 * 185.01509 * 15 14 13 18 18 N 1.31512 * 119.99763 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46980 * 90.00129 * 19 17 15 21 21 H 1.48507 * 109.47140 * 209.99734 * 19 17 15 22 22 H 1.48497 * 109.47367 * 329.99997 * 19 17 15 23 23 C 1.46899 * 111.26658 * 296.89452 * 13 12 11 24 24 C 1.47077 * 120.88208 * 353.05537 * 10 8 6 25 25 C 1.46924 * 118.73721 * 53.30691 * 5 4 2 26 26 C 1.53188 * 108.77609 * 306.64282 * 25 5 4 27 27 C 1.53038 * 109.49653 * 120.06137 * 2 1 3 28 28 H 1.09001 * 109.46283 * 61.33134 * 27 2 1 29 29 O 1.42897 * 109.46497 * 301.37076 * 27 2 1 30 30 H 1.08997 * 109.47092 * 299.93900 * 1 2 3 31 31 H 1.09001 * 109.46878 * 59.93428 * 1 2 3 32 32 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50995 * 65.65663 * 4 2 1 34 34 H 1.09003 * 109.43115 * 305.36942 * 4 2 1 35 35 H 1.09005 * 109.62724 * 248.79465 * 11 10 8 36 36 H 1.08996 * 109.63141 * 9.37432 * 11 10 8 37 37 H 1.08998 * 109.49546 * 293.86620 * 12 11 10 38 38 H 1.09009 * 109.49134 * 173.78727 * 12 11 10 39 39 H 1.09003 * 109.47236 * 179.31068 * 14 13 12 40 40 H 1.09003 * 109.46891 * 299.30444 * 14 13 12 41 41 H 0.97007 * 119.99348 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.49580 * 303.14549 * 23 13 12 43 43 H 1.09005 * 109.51736 * 183.07486 * 23 13 12 44 44 H 1.08999 * 109.63140 * 350.62682 * 24 10 8 45 45 H 1.09003 * 109.62739 * 111.01265 * 24 10 8 46 46 H 1.09000 * 109.58794 * 66.43164 * 25 5 4 47 47 H 1.08999 * 109.58381 * 186.85153 * 25 5 4 48 48 H 1.09010 * 109.49612 * 174.58812 * 26 25 5 49 49 H 1.09002 * 109.49934 * 294.68406 * 26 25 5 50 50 H 0.96698 * 114.00526 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5054 -0.8283 -1.1689 6 6 4.2820 -0.3846 -2.1771 7 8 3.7855 0.2210 -3.1041 8 6 5.7546 -0.6382 -2.1532 9 8 6.2672 -1.1453 -1.1773 10 7 6.5132 -0.3038 -3.2158 11 6 7.9798 -0.3974 -3.1557 12 6 8.4672 -1.1920 -4.3719 13 7 7.9335 -0.5822 -5.5971 14 6 8.5141 -1.2080 -6.7927 15 6 8.1979 -2.6814 -6.7923 16 1 7.5559 -3.0957 -6.0291 17 6 8.7282 -3.5005 -7.7663 18 7 8.4527 -4.7865 -7.7657 19 14 9.8393 -2.7840 -9.0860 20 1 11.2504 -2.8341 -8.6259 21 1 9.6977 -3.5745 -10.3352 22 1 9.4533 -1.3739 -9.3461 23 6 6.4663 -0.6469 -5.6290 24 6 5.8968 0.1700 -4.4643 25 6 4.1059 -1.4255 0.0317 26 6 3.5708 -0.6939 1.2667 27 6 2.0408 -0.7227 1.2486 28 1 1.6972 -1.7570 1.2356 29 8 1.5386 -0.0692 2.4159 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7653 -0.1497 -2.1345 34 1 1.6032 -1.7150 -1.2973 35 1 8.4117 0.6033 -3.1750 36 1 8.2768 -0.9097 -2.2406 37 1 8.1190 -2.2221 -4.2968 38 1 9.5567 -1.1773 -4.4031 39 1 8.0927 -0.7461 -7.6855 40 1 9.5951 -1.0683 -6.7872 41 1 8.8256 -5.3627 -8.4512 42 1 6.1458 -1.6846 -5.5363 43 1 6.1041 -0.2372 -6.5720 44 1 4.8166 0.0329 -4.4144 45 1 6.1255 1.2261 -4.6077 46 1 3.8387 -2.4807 0.0878 47 1 5.1902 -1.3229 -0.0125 48 1 3.9334 -1.1883 2.1680 49 1 3.9154 0.3402 1.2547 50 1 1.8224 -0.4747 3.2466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118969780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:10 Heat of formation + Delta-G solvation = -74.712027 kcal Electronic energy + Delta-G solvation = -31011.895842 eV Core-core repulsion = 26847.579394 eV Total energy + Delta-G solvation = -4164.316448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26486 -39.56701 -38.34194 -37.81903 -36.17202 -34.58839 -33.47021 -32.31994 -31.56498 -30.78203 -28.88714 -27.51706 -26.23242 -25.23923 -23.77389 -22.99799 -22.65979 -21.73755 -20.72476 -19.98919 -18.98171 -17.71819 -17.21246 -17.15527 -16.72188 -16.23964 -16.14188 -15.42199 -14.98615 -14.70214 -14.59058 -14.55246 -14.41183 -14.25850 -14.03089 -13.73456 -13.52648 -13.37929 -13.22779 -12.53627 -12.50500 -12.44310 -12.31443 -12.11923 -11.99436 -11.82521 -11.45414 -11.35518 -11.31837 -11.15837 -10.85074 -10.69407 -10.61095 -10.45285 -10.36360 -10.07889 -9.95147 -9.57913 -9.06405 -8.84134 -8.65186 -8.62950 -7.33184 -6.16112 -4.16958 1.34306 2.19246 3.11919 3.23571 3.29783 3.32081 3.35116 3.79334 4.04957 4.30925 4.34410 4.43310 4.61616 4.74825 4.82747 4.93219 5.04325 5.13096 5.16714 5.26443 5.29729 5.31313 5.39748 5.45157 5.50120 5.55899 5.66489 5.72883 5.73877 5.77320 5.86601 5.89593 5.94203 6.01138 6.03276 6.26455 6.37416 6.57930 6.60445 6.68221 6.85984 6.87925 6.98816 7.26383 7.29770 7.47432 7.64406 7.91378 7.95346 7.96078 8.37461 8.85453 9.46177 10.96764 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.002420 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.216710 B =11567.564051 C =11752.240050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.112 3.888 5 N -0.583 5.583 6 C 0.513 3.487 7 O -0.510 6.510 8 C 0.508 3.492 9 O -0.524 6.524 10 N -0.565 5.565 11 C 0.110 3.890 12 C 0.049 3.951 13 N -0.535 5.535 14 C 0.155 3.845 15 C -0.554 4.554 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.047 3.953 24 C 0.074 3.926 25 C 0.051 3.949 26 C -0.164 4.164 27 C 0.107 3.893 28 H 0.057 0.943 29 O -0.565 6.565 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.027 0.973 41 H 0.264 0.736 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.163 0.837 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 9.294 18.208 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.011 4.011 5 N -0.316 5.316 6 C 0.297 3.703 7 O -0.387 6.387 8 C 0.291 3.709 9 O -0.404 6.404 10 N -0.295 5.295 11 C -0.012 4.012 12 C -0.080 4.080 13 N -0.259 5.259 14 C 0.029 3.971 15 C -0.593 4.593 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.082 4.082 24 C -0.047 4.047 25 C -0.069 4.069 26 C -0.202 4.202 27 C 0.048 3.952 28 H 0.075 0.925 29 O -0.371 6.371 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.151 0.849 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.179 0.821 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.177 10.067 17.626 23.671 hybrid contribution 0.646 -1.202 -0.379 1.417 sum -11.530 8.865 17.248 22.561 Atomic orbital electron populations 1.21685 0.93490 1.02123 1.02535 1.21386 0.96970 1.00642 0.92642 0.90045 1.21751 0.78778 1.01453 0.99079 1.47990 1.06489 1.58988 1.18172 1.20181 0.87924 0.79592 0.82583 1.90516 1.74819 1.39771 1.33578 1.19940 0.87500 0.79699 0.83710 1.90259 1.73313 1.44297 1.32579 1.48131 1.07629 1.60963 1.12826 1.22064 0.77459 1.01529 1.00127 1.22256 1.00035 0.96870 0.88831 1.62449 1.05172 1.55176 1.03119 1.20186 0.95022 0.93660 0.88276 1.21663 1.31650 0.92002 1.13959 0.90879 1.24982 0.95938 0.94626 0.97499 1.69931 1.44731 1.04115 1.34763 0.86774 0.81297 0.79735 0.81453 1.20161 1.21288 1.18838 1.22321 0.89462 0.99149 0.97267 1.23093 1.01587 0.98663 0.81390 1.23259 1.05757 0.96236 0.81694 1.22654 0.96129 1.02506 0.98952 1.21873 0.92276 0.95328 0.85695 0.92533 1.86503 1.75701 1.58982 1.15918 0.91367 0.92300 0.92616 0.87952 0.90699 0.90575 0.88960 0.93030 0.90037 0.95246 0.95475 0.92615 0.93559 0.90109 0.84927 0.90912 0.91469 0.82070 0.90241 0.90786 0.77581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.04 37.16 0.34 -0.71 16 2 C -0.10 -0.84 2.61 -90.72 -0.24 -1.08 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.11 1.07 5.70 -3.93 -0.02 1.05 16 5 N -0.58 -6.75 2.98 -173.54 -0.52 -7.27 16 6 C 0.51 7.24 7.62 -11.59 -0.09 7.15 16 7 O -0.51 -7.80 12.58 5.50 0.07 -7.73 16 8 C 0.51 7.76 7.68 -11.59 -0.09 7.67 16 9 O -0.52 -8.19 12.48 5.50 0.07 -8.12 16 10 N -0.56 -8.91 3.01 -172.97 -0.52 -9.43 16 11 C 0.11 1.69 6.61 -3.60 -0.02 1.66 16 12 C 0.05 0.91 5.15 -3.70 -0.02 0.89 16 13 N -0.54 -10.67 4.83 -235.76 -1.14 -11.81 16 14 C 0.16 3.60 4.18 -4.98 -0.02 3.58 16 15 C -0.55 -15.08 8.30 -34.44 -0.29 -15.36 16 16 H 0.07 2.19 6.13 -52.49 -0.32 1.87 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 19 Si 0.88 21.03 27.37 -169.99 -4.65 16.37 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.05 6.69 56.52 0.38 -5.67 16 23 C 0.05 0.88 5.24 -3.70 -0.02 0.86 16 24 C 0.07 1.17 6.13 -3.60 -0.02 1.14 16 25 C 0.05 0.52 6.18 -3.71 -0.02 0.50 16 26 C -0.16 -1.33 5.70 -26.61 -0.15 -1.48 16 27 C 0.11 0.84 2.88 -26.69 -0.08 0.76 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 O -0.57 -4.39 12.59 -35.23 -0.44 -4.84 16 30 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 1.06 7.00 -51.93 -0.36 0.70 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.36 7.05 -51.93 -0.37 0.99 16 37 H 0.05 1.12 6.79 -51.93 -0.35 0.76 16 38 H 0.08 1.45 8.11 -51.92 -0.42 1.03 16 39 H 0.03 0.69 7.47 -51.93 -0.39 0.30 16 40 H 0.03 0.63 7.29 -51.93 -0.38 0.25 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 43 H 0.08 1.45 8.05 -51.93 -0.42 1.04 16 44 H 0.13 2.10 4.37 -54.62 -0.24 1.86 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.16 1.96 3.90 -56.65 -0.22 1.74 16 48 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.38 1.43 9.08 45.56 0.41 1.85 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -31.65 378.74 -8.69 -40.35 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.20 Total: 4.45 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -0.84 Total: 8.58 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -1.40 Total: -54.77 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.31 Total: -20.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.65 Total: 16.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.65 -8.69 -40.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118969780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.366 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds