Wall clock time and date at job start Tue Mar 31 2020 23:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49708 * 2 1 4 4 C 1.52760 * 109.59126 * 240.04613 * 2 1 3 5 5 N 1.46934 * 109.00605 * 185.53803 * 4 2 1 6 6 C 1.34776 * 120.62664 * 233.57994 * 5 4 2 7 7 O 1.21351 * 119.99933 * 6.77835 * 6 5 4 8 8 C 1.49450 * 119.99765 * 186.77249 * 6 5 4 9 9 O 1.21344 * 120.00176 * 353.93948 * 8 6 5 10 10 N 1.34771 * 119.99804 * 173.93764 * 8 6 5 11 11 C 1.47081 * 120.88047 * 172.78219 * 10 8 6 12 12 C 1.53237 * 108.52315 * 129.08673 * 11 10 8 13 13 N 1.46899 * 109.34215 * 53.82999 * 12 11 10 14 14 C 1.46897 * 111.00156 * 172.74871 * 13 12 11 15 15 C 1.50697 * 109.47356 * 59.30515 * 14 13 12 16 16 H 1.07994 * 119.99605 * 5.01446 * 15 14 13 17 17 C 1.37876 * 119.99988 * 185.01509 * 15 14 13 18 18 N 1.31512 * 119.99763 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46980 * 90.00129 * 19 17 15 21 21 H 1.48507 * 109.47140 * 209.99734 * 19 17 15 22 22 H 1.48497 * 109.47367 * 329.99997 * 19 17 15 23 23 C 1.46899 * 111.26658 * 296.89452 * 13 12 11 24 24 C 1.47077 * 120.88208 * 353.05537 * 10 8 6 25 25 C 1.46924 * 118.73721 * 53.30691 * 5 4 2 26 26 C 1.53188 * 108.77609 * 306.64282 * 25 5 4 27 27 C 1.53038 * 109.49653 * 120.06137 * 2 1 3 28 28 H 1.09001 * 109.46283 * 61.33134 * 27 2 1 29 29 O 1.42897 * 109.46497 * 301.37076 * 27 2 1 30 30 H 1.08997 * 109.47092 * 299.93900 * 1 2 3 31 31 H 1.09001 * 109.46878 * 59.93428 * 1 2 3 32 32 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50995 * 65.65663 * 4 2 1 34 34 H 1.09003 * 109.43115 * 305.36942 * 4 2 1 35 35 H 1.09005 * 109.62724 * 248.79465 * 11 10 8 36 36 H 1.08996 * 109.63141 * 9.37432 * 11 10 8 37 37 H 1.08998 * 109.49546 * 293.86620 * 12 11 10 38 38 H 1.09009 * 109.49134 * 173.78727 * 12 11 10 39 39 H 1.09003 * 109.47236 * 179.31068 * 14 13 12 40 40 H 1.09003 * 109.46891 * 299.30444 * 14 13 12 41 41 H 0.97007 * 119.99348 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.49580 * 303.14549 * 23 13 12 43 43 H 1.09005 * 109.51736 * 183.07486 * 23 13 12 44 44 H 1.08999 * 109.63140 * 350.62682 * 24 10 8 45 45 H 1.09003 * 109.62739 * 111.01265 * 24 10 8 46 46 H 1.09000 * 109.58794 * 66.43164 * 25 5 4 47 47 H 1.08999 * 109.58381 * 186.85153 * 25 5 4 48 48 H 1.09010 * 109.49612 * 174.58812 * 26 25 5 49 49 H 1.09002 * 109.49934 * 294.68406 * 26 25 5 50 50 H 0.96698 * 114.00526 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2469 5 7 3.5054 -0.8283 -1.1689 6 6 4.2820 -0.3846 -2.1771 7 8 3.7855 0.2210 -3.1041 8 6 5.7546 -0.6382 -2.1532 9 8 6.2672 -1.1453 -1.1773 10 7 6.5132 -0.3038 -3.2158 11 6 7.9798 -0.3974 -3.1557 12 6 8.4672 -1.1920 -4.3719 13 7 7.9335 -0.5822 -5.5971 14 6 8.5141 -1.2080 -6.7927 15 6 8.1979 -2.6814 -6.7923 16 1 7.5559 -3.0957 -6.0291 17 6 8.7282 -3.5005 -7.7663 18 7 8.4527 -4.7865 -7.7657 19 14 9.8393 -2.7840 -9.0860 20 1 11.2504 -2.8341 -8.6259 21 1 9.6977 -3.5745 -10.3352 22 1 9.4533 -1.3739 -9.3461 23 6 6.4663 -0.6469 -5.6290 24 6 5.8968 0.1700 -4.4643 25 6 4.1059 -1.4255 0.0317 26 6 3.5708 -0.6939 1.2667 27 6 2.0408 -0.7227 1.2486 28 1 1.6972 -1.7570 1.2356 29 8 1.5386 -0.0692 2.4159 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7653 -0.1497 -2.1345 34 1 1.6032 -1.7150 -1.2973 35 1 8.4117 0.6033 -3.1750 36 1 8.2768 -0.9097 -2.2406 37 1 8.1190 -2.2221 -4.2968 38 1 9.5567 -1.1773 -4.4031 39 1 8.0927 -0.7461 -7.6855 40 1 9.5951 -1.0683 -6.7872 41 1 8.8256 -5.3627 -8.4512 42 1 6.1458 -1.6846 -5.5363 43 1 6.1041 -0.2372 -6.5720 44 1 4.8166 0.0329 -4.4144 45 1 6.1255 1.2261 -4.6077 46 1 3.8387 -2.4807 0.0878 47 1 5.1902 -1.3229 -0.0125 48 1 3.9334 -1.1883 2.1680 49 1 3.9154 0.3402 1.2547 50 1 1.8224 -0.4747 3.2466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118969780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:09 Heat of formation + Delta-G solvation = -100.109448 kcal Electronic energy + Delta-G solvation = -31012.997157 eV Core-core repulsion = 26847.579394 eV Total energy + Delta-G solvation = -4165.417763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.36379 -40.59174 -39.34092 -39.19210 -37.06182 -35.98797 -34.43066 -34.18077 -32.37520 -32.14127 -30.58176 -28.46352 -27.55784 -26.37864 -25.07494 -24.28138 -23.51321 -23.25891 -21.88698 -20.99189 -20.29718 -18.99572 -18.36163 -18.30423 -18.05358 -17.40527 -17.26208 -16.50457 -16.20894 -16.10149 -15.92601 -15.85813 -15.72117 -15.34702 -15.07110 -14.93723 -14.50323 -14.45712 -14.33179 -14.03367 -13.96875 -13.83732 -13.20635 -13.08059 -13.02181 -12.85237 -12.72372 -12.67846 -12.53849 -12.32925 -12.22750 -12.13091 -12.00981 -11.82813 -11.73595 -11.59351 -11.22862 -10.84058 -10.79771 -10.05809 -9.98004 -9.84335 -9.07913 -8.33515 -6.39694 0.18849 1.12212 1.36209 1.37755 1.49874 1.96522 2.21006 2.32927 2.94738 3.02125 3.21511 3.23958 3.61685 3.74026 3.89491 3.93650 4.03896 4.10035 4.21030 4.23582 4.30287 4.32622 4.48949 4.50567 4.53616 4.61568 4.64358 4.65838 4.75983 4.83984 4.86660 4.91992 4.99386 5.02946 5.03669 5.06847 5.08731 5.14090 5.20964 5.27836 5.36498 5.45724 5.48346 5.82257 6.00455 6.14381 6.27721 6.29810 6.53759 6.66827 6.78238 6.89282 7.27626 8.83020 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.002420 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.216710 B =11567.564051 C =11752.240050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.063 0.937 4 C 0.110 3.890 5 N -0.577 5.577 6 C 0.509 3.491 7 O -0.527 6.527 8 C 0.505 3.495 9 O -0.530 6.530 10 N -0.575 5.575 11 C 0.120 3.880 12 C 0.052 3.948 13 N -0.526 5.526 14 C 0.161 3.839 15 C -0.551 4.551 16 H 0.028 0.972 17 C 0.009 3.991 18 N -0.949 5.949 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.243 1.243 23 C 0.050 3.950 24 C 0.089 3.911 25 C 0.049 3.951 26 C -0.155 4.155 27 C 0.111 3.889 28 H 0.071 0.929 29 O -0.578 6.578 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.009 0.991 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.266 0.734 42 H 0.007 0.993 43 H 0.088 0.912 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.145 0.855 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.158 10.936 19.057 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.081 0.919 4 C -0.011 4.011 5 N -0.309 5.309 6 C 0.292 3.708 7 O -0.406 6.406 8 C 0.289 3.711 9 O -0.410 6.410 10 N -0.306 5.306 11 C -0.001 4.001 12 C -0.077 4.077 13 N -0.249 5.249 14 C 0.033 3.967 15 C -0.590 4.590 16 H 0.046 0.954 17 C -0.189 4.189 18 N -0.589 5.589 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.166 1.166 23 C -0.079 4.079 24 C -0.033 4.033 25 C -0.071 4.071 26 C -0.193 4.193 27 C 0.052 3.948 28 H 0.089 0.911 29 O -0.386 6.386 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.028 0.972 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.106 0.894 44 H 0.153 0.847 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.161 0.839 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.260 11.718 18.542 25.129 hybrid contribution 0.580 -1.793 -0.492 1.948 sum -11.680 9.925 18.051 23.680 Atomic orbital electron populations 1.21641 0.92408 1.02828 1.02437 1.21337 0.97785 0.99546 0.92744 0.91869 1.21903 0.77390 1.02462 0.99367 1.48133 1.07298 1.57691 1.17766 1.20014 0.87530 0.80080 0.83187 1.90492 1.74812 1.40936 1.34381 1.20233 0.88160 0.79237 0.83471 1.90294 1.73793 1.44222 1.32704 1.48224 1.07870 1.61429 1.13086 1.21988 0.77473 1.02255 0.98435 1.22260 1.00518 0.95145 0.89775 1.62491 1.05763 1.54055 1.02565 1.20081 0.95740 0.90891 0.89976 1.21879 1.30286 0.94366 1.12491 0.95378 1.25976 0.97793 0.94829 1.00273 1.70095 1.46723 1.05941 1.36182 0.85621 0.79187 0.79772 0.77799 1.19039 1.21280 1.16585 1.22338 0.88778 0.97536 0.99260 1.22960 1.01410 0.98782 0.80122 1.23253 1.04719 0.97216 0.81940 1.22591 0.96517 1.01518 0.98723 1.21799 0.91722 0.95783 0.85446 0.91116 1.86470 1.75812 1.59569 1.16781 0.91860 0.92009 0.91486 0.88849 0.88944 0.88070 0.88312 0.97239 0.89201 0.94760 0.94513 0.92516 0.97467 0.89401 0.84749 0.89089 0.90188 0.83852 0.87889 0.92261 0.75522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.04 71.98 0.65 -1.14 16 2 C -0.09 -1.51 2.61 -10.86 -0.03 -1.54 16 3 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.11 1.98 5.70 86.22 0.49 2.48 16 5 N -0.58 -12.93 2.98 -821.30 -2.45 -15.37 16 6 C 0.51 14.25 7.62 87.27 0.66 14.91 16 7 O -0.53 -16.05 12.58 -3.25 -0.04 -16.09 16 8 C 0.51 15.35 7.68 87.27 0.67 16.02 16 9 O -0.53 -16.43 12.48 -3.23 -0.04 -16.47 16 10 N -0.57 -17.94 3.01 -819.52 -2.47 -20.40 16 11 C 0.12 3.58 6.61 86.35 0.57 4.15 16 12 C 0.05 1.95 5.15 86.38 0.44 2.40 16 13 N -0.53 -20.81 4.83 -899.81 -4.35 -25.16 16 14 C 0.16 7.37 4.18 85.56 0.36 7.72 16 15 C -0.55 -30.94 8.30 25.60 0.21 -30.72 16 16 H 0.03 1.79 6.13 -2.91 -0.02 1.77 16 17 C 0.01 0.53 5.47 84.65 0.46 0.99 16 18 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 19 Si 0.95 43.12 27.37 68.60 1.88 45.00 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.24 -10.07 6.69 99.48 0.67 -9.41 16 23 C 0.05 1.89 5.24 86.38 0.45 2.35 16 24 C 0.09 2.75 6.13 86.35 0.53 3.28 16 25 C 0.05 0.94 6.18 86.36 0.53 1.47 16 26 C -0.16 -2.22 5.70 30.67 0.17 -2.05 16 27 C 0.11 1.49 2.88 30.62 0.09 1.58 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 29 O -0.58 -7.66 12.59 -148.98 -1.88 -9.53 16 30 H 0.06 0.92 7.65 -2.39 -0.02 0.90 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 1.88 7.00 -2.39 -0.02 1.87 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.10 2.83 7.05 -2.39 -0.02 2.81 16 37 H 0.01 0.43 6.79 -2.39 -0.02 0.41 16 38 H 0.09 3.17 8.11 -2.38 -0.02 3.15 16 39 H 0.03 1.55 7.47 -2.39 -0.02 1.54 16 40 H 0.04 1.63 7.29 -2.39 -0.02 1.62 16 41 H 0.27 15.48 8.31 -92.70 -0.77 14.70 16 42 H 0.01 0.32 6.92 -2.39 -0.02 0.30 16 43 H 0.09 3.16 8.05 -2.38 -0.02 3.14 16 44 H 0.14 4.24 4.37 -44.99 -0.20 4.05 16 45 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.15 3.39 3.90 -77.09 -0.30 3.09 16 48 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.39 1.95 9.08 -74.06 -0.67 1.27 16 Total: -1.00 -70.58 378.74 -2.99 -73.58 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.23 Total: 21.39 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.28 Total: 21.90 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -8.96 Total: -119.76 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.96 Total: -42.10 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -70.58 -2.99 -73.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118969780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.533 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds