Wall clock time and date at job start Tue Mar 31 2020 23:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 108.59792 * 2 1 4 4 C 1.47681 * 108.53915 * 117.95079 * 2 1 3 5 5 C 1.54323 * 109.65925 * 181.73264 * 4 2 1 6 6 N 1.44455 * 109.62879 * 290.12630 * 5 4 2 7 7 C 1.34780 * 118.51423 * 269.05293 * 6 5 4 8 8 O 1.21345 * 119.99855 * 4.61840 * 7 6 5 9 9 C 1.49449 * 120.00155 * 184.60984 * 7 6 5 10 10 O 1.21358 * 119.99769 * 85.49374 * 9 7 6 11 11 N 1.34776 * 120.00335 * 265.49878 * 9 7 6 12 12 C 1.47088 * 120.85927 * 4.98686 * 11 9 7 13 13 C 1.53241 * 108.51948 * 231.12208 * 12 11 9 14 14 N 1.46897 * 109.35781 * 306.21428 * 13 12 11 15 15 C 1.46909 * 110.99425 * 187.23699 * 14 13 12 16 16 C 1.50695 * 109.47341 * 287.22547 * 15 14 13 17 17 H 1.07998 * 119.99886 * 5.14443 * 16 15 14 18 18 C 1.37879 * 119.99890 * 185.15301 * 16 15 14 19 19 N 1.31516 * 119.99784 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00233 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47049 * 90.00060 * 20 18 16 22 22 H 1.48496 * 109.47351 * 210.00497 * 20 18 16 23 23 H 1.48508 * 109.47048 * 330.00487 * 20 18 16 24 24 C 1.46896 * 111.27301 * 63.09275 * 14 13 12 25 25 C 1.47078 * 120.88181 * 184.97264 * 11 9 7 26 26 C 1.48186 * 122.97453 * 88.78203 * 6 5 4 27 27 C 1.54296 * 110.69401 * 319.04818 * 26 6 5 28 28 O 1.40535 * 109.86340 * 320.61621 * 27 26 6 29 29 H 1.08995 * 109.47149 * 178.00585 * 1 2 3 30 30 H 1.09001 * 109.46571 * 298.00573 * 1 2 3 31 31 H 1.09000 * 109.46677 * 57.99843 * 1 2 3 32 32 H 1.09006 * 109.43711 * 301.86548 * 4 2 1 33 33 H 1.09001 * 109.43780 * 61.77963 * 4 2 1 34 34 H 1.08998 * 109.24270 * 170.14146 * 5 4 2 35 35 H 1.08994 * 109.44086 * 50.23557 * 5 4 2 36 36 H 1.09003 * 109.60345 * 111.42681 * 12 11 9 37 37 H 1.08993 * 109.65298 * 350.84947 * 12 11 9 38 38 H 1.08999 * 109.49229 * 186.24039 * 13 12 11 39 39 H 1.09003 * 109.48871 * 66.18350 * 13 12 11 40 40 H 1.09005 * 109.46887 * 47.22664 * 15 14 13 41 41 H 1.09004 * 109.46790 * 167.22052 * 15 14 13 42 42 H 0.97004 * 119.99560 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.49566 * 56.84900 * 24 14 13 44 44 H 1.08996 * 109.49482 * 176.90104 * 24 14 13 45 45 H 1.08998 * 109.62803 * 9.14009 * 25 11 9 46 46 H 1.09002 * 109.78793 * 248.65786 * 25 11 9 47 47 H 1.08995 * 109.23621 * 79.36305 * 26 6 5 48 48 H 1.08999 * 109.23421 * 198.73858 * 26 6 5 49 49 H 1.08998 * 109.40513 * 80.73757 * 27 26 6 50 50 H 1.08996 * 109.40387 * 200.49925 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8777 1.0331 0.0000 4 6 1.9996 -0.6563 1.2368 5 6 3.5419 -0.6317 1.2843 6 7 4.0726 -1.5226 0.2786 7 6 4.3173 -2.8037 0.6184 8 8 4.0141 -3.2072 1.7219 9 6 4.9618 -3.7274 -0.3639 10 8 6.1711 -3.7653 -0.4579 11 7 4.2000 -4.5182 -1.1455 12 6 2.7332 -4.4105 -1.1258 13 6 2.1452 -5.8102 -0.9171 14 7 2.6881 -6.7227 -1.9322 15 6 2.0215 -8.0305 -1.8747 16 6 2.4833 -8.7763 -0.6494 17 1 3.1354 -8.2931 0.0631 18 6 2.0735 -10.0757 -0.4380 19 7 2.4761 -10.7264 0.6317 20 14 0.9453 -10.9114 -1.6700 21 1 1.7621 -11.5996 -2.7017 22 1 0.0950 -11.9057 -0.9675 23 1 0.0817 -9.8932 -2.3204 24 6 4.1435 -6.8672 -1.7952 25 6 4.8135 -5.5110 -2.0405 26 6 4.3547 -1.0933 -1.1114 27 6 3.2359 -0.1681 -1.6339 28 8 1.9857 -0.6343 -1.1927 29 1 -0.3633 -1.0270 -0.0358 30 1 -0.3632 0.4826 0.9074 31 1 -0.3633 0.5446 -0.8715 32 1 1.6004 -0.1272 2.1023 33 1 1.6541 -1.6900 1.2526 34 1 3.8762 -0.9554 2.2699 35 1 3.8946 0.3821 1.0948 36 1 2.3836 -4.0042 -2.0749 37 1 2.4245 -3.7581 -0.3091 38 1 1.0601 -5.7664 -1.0104 39 1 2.4108 -6.1718 0.0763 40 1 0.9421 -7.8864 -1.8271 41 1 2.2722 -8.6056 -2.7662 42 1 2.1875 -11.6404 0.7806 43 1 4.3816 -7.2138 -0.7896 44 1 4.5075 -7.5905 -2.5249 45 1 5.8800 -5.5858 -1.8283 46 1 4.6667 -5.2126 -3.0785 47 1 5.3040 -0.5582 -1.1363 48 1 4.4220 -1.9725 -1.7521 49 1 3.3979 0.8429 -1.2602 50 1 3.2544 -0.1574 -2.7237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120396919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:14 Heat of formation + Delta-G solvation = -84.416807 kcal Electronic energy + Delta-G solvation = -31993.960195 eV Core-core repulsion = 27829.222917 eV Total energy + Delta-G solvation = -4164.737279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22174 -39.78321 -38.57852 -37.51999 -35.59188 -34.62732 -34.43754 -32.30251 -30.91287 -29.84813 -29.32204 -28.69682 -26.13932 -25.02839 -24.03538 -23.17315 -22.48916 -21.78473 -21.33321 -19.93760 -18.72251 -17.97263 -17.54384 -16.92691 -16.78276 -16.37015 -15.79630 -15.69409 -15.07350 -14.75442 -14.59255 -14.58554 -14.50245 -14.11895 -13.83257 -13.68671 -13.55324 -13.51873 -13.21102 -12.61031 -12.47131 -12.41456 -12.32736 -12.29644 -12.08668 -11.76422 -11.48831 -11.34331 -11.27052 -11.23315 -11.03691 -10.98962 -10.65241 -10.45585 -10.34761 -10.03154 -10.02015 -9.54094 -9.43248 -9.02954 -8.64907 -8.60323 -7.33150 -6.12230 -4.13549 2.06570 2.18039 2.58612 3.16419 3.25810 3.33821 3.36480 3.40680 4.08107 4.32350 4.32883 4.36947 4.51339 4.66662 4.76774 4.80367 4.92031 4.96762 5.08258 5.19289 5.19983 5.20643 5.25405 5.29923 5.41136 5.41842 5.46270 5.50665 5.60113 5.66530 5.78976 5.84785 5.88921 5.91903 5.98942 6.21471 6.29598 6.54512 6.57563 6.73398 6.80046 6.86810 6.94085 6.99402 7.27019 7.49315 7.71781 7.89887 7.93220 7.95072 8.40934 8.90098 9.49281 11.00551 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003237 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.136902 B = 8648.859934 C = 9241.660387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 H 0.056 0.944 4 C -0.165 4.165 5 C 0.113 3.887 6 N -0.591 5.591 7 C 0.517 3.483 8 O -0.504 6.504 9 C 0.514 3.486 10 O -0.525 6.525 11 N -0.586 5.586 12 C 0.114 3.886 13 C 0.046 3.954 14 N -0.532 5.532 15 C 0.156 3.844 16 C -0.556 4.556 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.048 3.952 25 C 0.114 3.886 26 C 0.076 3.924 27 C 0.054 3.946 28 O -0.359 6.359 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.264 0.736 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 26.344 -5.084 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.074 0.926 4 C -0.204 4.204 5 C -0.010 4.010 6 N -0.327 5.327 7 C 0.299 3.701 8 O -0.378 6.378 9 C 0.296 3.704 10 O -0.401 6.401 11 N -0.320 5.320 12 C -0.009 4.009 13 C -0.083 4.083 14 N -0.256 5.256 15 C 0.030 3.970 16 C -0.594 4.594 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.081 4.081 25 C -0.008 4.008 26 C -0.047 4.047 27 C -0.025 4.025 28 O -0.277 6.277 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.077 0.923 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.729 26.005 -4.993 26.490 hybrid contribution -0.260 -0.893 0.503 1.058 sum -0.988 25.112 -4.490 25.529 Atomic orbital electron populations 1.21925 0.93407 1.03396 1.02243 1.21118 0.95559 0.95024 0.85333 0.92635 1.21931 0.96118 1.03877 0.98475 1.21383 0.93325 0.93426 0.92858 1.47703 1.63701 1.09753 1.11521 1.20457 0.78142 0.82936 0.88532 1.90825 1.49651 1.75354 1.21936 1.20118 0.87496 0.82042 0.80703 1.90779 1.13077 1.68835 1.67392 1.48263 1.07822 1.36180 1.39755 1.22015 0.77839 0.98703 1.02350 1.22273 0.99346 0.90878 0.95847 1.62432 1.03530 1.13450 1.46221 1.20183 0.94474 0.85703 0.96680 1.21683 1.31652 0.98575 1.07534 0.90705 1.24982 0.95595 0.97223 0.95188 1.69939 1.44818 1.11663 1.26970 0.86778 0.81294 0.79659 0.81530 1.20143 1.21320 1.18893 1.22298 0.89179 0.94184 1.02411 1.21992 0.98244 0.87776 0.92784 1.22929 0.99051 1.01168 0.81507 1.22820 0.83418 0.96025 1.00221 1.87542 1.34141 1.64885 1.41101 0.91446 0.91249 0.92001 0.89233 0.90001 0.89011 0.90438 0.90072 0.90533 0.90143 0.93351 0.95415 0.95315 0.92618 0.92764 0.89814 0.89148 0.90637 0.90205 0.89376 0.92303 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.43 37.16 0.35 -0.68 16 2 C 0.09 0.63 2.64 -29.30 -0.08 0.56 16 3 H 0.06 0.31 7.27 -51.93 -0.38 -0.07 16 4 C -0.17 -1.36 5.18 -28.61 -0.15 -1.51 16 5 C 0.11 1.02 5.35 -4.44 -0.02 1.00 16 6 N -0.59 -6.70 2.56 -172.80 -0.44 -7.15 16 7 C 0.52 8.12 5.42 -11.58 -0.06 8.06 16 8 O -0.50 -9.50 16.54 5.50 0.09 -9.41 16 9 C 0.51 8.74 5.40 -11.59 -0.06 8.68 16 10 O -0.52 -10.06 16.58 5.49 0.09 -9.97 16 11 N -0.59 -9.44 2.95 -172.97 -0.51 -9.95 16 12 C 0.11 1.72 6.52 -3.60 -0.02 1.69 16 13 C 0.05 0.85 5.35 -3.70 -0.02 0.83 16 14 N -0.53 -10.60 4.83 -235.76 -1.14 -11.74 16 15 C 0.16 3.64 4.25 -4.97 -0.02 3.61 16 16 C -0.56 -15.36 8.36 -34.44 -0.29 -15.65 16 17 H 0.07 2.30 6.15 -52.49 -0.32 1.97 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 20 Si 0.88 21.19 27.37 -169.99 -4.65 16.53 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.26 -6.08 6.69 56.52 0.38 -5.70 16 24 C 0.05 0.93 5.00 -3.71 -0.02 0.91 16 25 C 0.11 1.81 6.58 -3.61 -0.02 1.79 16 26 C 0.08 0.66 6.39 -2.44 -0.02 0.65 16 27 C 0.05 0.35 6.49 37.84 0.25 0.60 16 28 O -0.36 -3.21 9.82 -34.11 -0.34 -3.55 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.96 7.30 -51.93 -0.38 0.58 16 35 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.14 6.37 -51.93 -0.33 0.81 16 38 H 0.08 1.40 7.96 -51.93 -0.41 0.99 16 39 H 0.05 1.06 7.43 -51.93 -0.39 0.68 16 40 H 0.03 0.65 7.33 -51.93 -0.38 0.27 16 41 H 0.03 0.67 7.29 -51.93 -0.38 0.29 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.05 1.24 6.41 -51.93 -0.33 0.91 16 44 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 45 H 0.09 1.46 7.10 -51.93 -0.37 1.09 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.89 6.38 -51.93 -0.33 0.56 16 49 H 0.06 0.28 7.21 -51.93 -0.37 -0.10 16 50 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -34.52 385.32 -8.78 -43.30 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.18 Total: 0.25 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -0.29 Total: 12.52 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -1.32 Total: -55.50 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.15 Total: -22.92 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.65 Total: 16.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.52 -8.78 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120396919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.114 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds