Wall clock time and date at job start Tue Mar 31 2020 23:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 108.59792 * 2 1 4 4 C 1.47681 * 108.53915 * 117.95079 * 2 1 3 5 5 C 1.54323 * 109.65925 * 181.73264 * 4 2 1 6 6 N 1.44455 * 109.62879 * 290.12630 * 5 4 2 7 7 C 1.34780 * 118.51423 * 269.05293 * 6 5 4 8 8 O 1.21345 * 119.99855 * 4.61840 * 7 6 5 9 9 C 1.49449 * 120.00155 * 184.60984 * 7 6 5 10 10 O 1.21358 * 119.99769 * 85.49374 * 9 7 6 11 11 N 1.34776 * 120.00335 * 265.49878 * 9 7 6 12 12 C 1.47088 * 120.85927 * 4.98686 * 11 9 7 13 13 C 1.53241 * 108.51948 * 231.12208 * 12 11 9 14 14 N 1.46897 * 109.35781 * 306.21428 * 13 12 11 15 15 C 1.46909 * 110.99425 * 187.23699 * 14 13 12 16 16 C 1.50695 * 109.47341 * 287.22547 * 15 14 13 17 17 H 1.07998 * 119.99886 * 5.14443 * 16 15 14 18 18 C 1.37879 * 119.99890 * 185.15301 * 16 15 14 19 19 N 1.31516 * 119.99784 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00233 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47049 * 90.00060 * 20 18 16 22 22 H 1.48496 * 109.47351 * 210.00497 * 20 18 16 23 23 H 1.48508 * 109.47048 * 330.00487 * 20 18 16 24 24 C 1.46896 * 111.27301 * 63.09275 * 14 13 12 25 25 C 1.47078 * 120.88181 * 184.97264 * 11 9 7 26 26 C 1.48186 * 122.97453 * 88.78203 * 6 5 4 27 27 C 1.54296 * 110.69401 * 319.04818 * 26 6 5 28 28 O 1.40535 * 109.86340 * 320.61621 * 27 26 6 29 29 H 1.08995 * 109.47149 * 178.00585 * 1 2 3 30 30 H 1.09001 * 109.46571 * 298.00573 * 1 2 3 31 31 H 1.09000 * 109.46677 * 57.99843 * 1 2 3 32 32 H 1.09006 * 109.43711 * 301.86548 * 4 2 1 33 33 H 1.09001 * 109.43780 * 61.77963 * 4 2 1 34 34 H 1.08998 * 109.24270 * 170.14146 * 5 4 2 35 35 H 1.08994 * 109.44086 * 50.23557 * 5 4 2 36 36 H 1.09003 * 109.60345 * 111.42681 * 12 11 9 37 37 H 1.08993 * 109.65298 * 350.84947 * 12 11 9 38 38 H 1.08999 * 109.49229 * 186.24039 * 13 12 11 39 39 H 1.09003 * 109.48871 * 66.18350 * 13 12 11 40 40 H 1.09005 * 109.46887 * 47.22664 * 15 14 13 41 41 H 1.09004 * 109.46790 * 167.22052 * 15 14 13 42 42 H 0.97004 * 119.99560 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.49566 * 56.84900 * 24 14 13 44 44 H 1.08996 * 109.49482 * 176.90104 * 24 14 13 45 45 H 1.08998 * 109.62803 * 9.14009 * 25 11 9 46 46 H 1.09002 * 109.78793 * 248.65786 * 25 11 9 47 47 H 1.08995 * 109.23621 * 79.36305 * 26 6 5 48 48 H 1.08999 * 109.23421 * 198.73858 * 26 6 5 49 49 H 1.08998 * 109.40513 * 80.73757 * 27 26 6 50 50 H 1.08996 * 109.40387 * 200.49925 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8777 1.0331 0.0000 4 6 1.9996 -0.6563 1.2368 5 6 3.5419 -0.6317 1.2843 6 7 4.0726 -1.5226 0.2786 7 6 4.3173 -2.8037 0.6184 8 8 4.0141 -3.2072 1.7219 9 6 4.9618 -3.7274 -0.3639 10 8 6.1711 -3.7653 -0.4579 11 7 4.2000 -4.5182 -1.1455 12 6 2.7332 -4.4105 -1.1258 13 6 2.1452 -5.8102 -0.9171 14 7 2.6881 -6.7227 -1.9322 15 6 2.0215 -8.0305 -1.8747 16 6 2.4833 -8.7763 -0.6494 17 1 3.1354 -8.2931 0.0631 18 6 2.0735 -10.0757 -0.4380 19 7 2.4761 -10.7264 0.6317 20 14 0.9453 -10.9114 -1.6700 21 1 1.7621 -11.5996 -2.7017 22 1 0.0950 -11.9057 -0.9675 23 1 0.0817 -9.8932 -2.3204 24 6 4.1435 -6.8672 -1.7952 25 6 4.8135 -5.5110 -2.0405 26 6 4.3547 -1.0933 -1.1114 27 6 3.2359 -0.1681 -1.6339 28 8 1.9857 -0.6343 -1.1927 29 1 -0.3633 -1.0270 -0.0358 30 1 -0.3632 0.4826 0.9074 31 1 -0.3633 0.5446 -0.8715 32 1 1.6004 -0.1272 2.1023 33 1 1.6541 -1.6900 1.2526 34 1 3.8762 -0.9554 2.2699 35 1 3.8946 0.3821 1.0948 36 1 2.3836 -4.0042 -2.0749 37 1 2.4245 -3.7581 -0.3091 38 1 1.0601 -5.7664 -1.0104 39 1 2.4108 -6.1718 0.0763 40 1 0.9421 -7.8864 -1.8271 41 1 2.2722 -8.6056 -2.7662 42 1 2.1875 -11.6404 0.7806 43 1 4.3816 -7.2138 -0.7896 44 1 4.5075 -7.5905 -2.5249 45 1 5.8800 -5.5858 -1.8283 46 1 4.6667 -5.2126 -3.0785 47 1 5.3040 -0.5582 -1.1363 48 1 4.4220 -1.9725 -1.7521 49 1 3.3979 0.8429 -1.2602 50 1 3.2544 -0.1574 -2.7237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120396919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:13 Heat of formation + Delta-G solvation = -111.373546 kcal Electronic energy + Delta-G solvation = -31995.129127 eV Core-core repulsion = 27829.222917 eV Total energy + Delta-G solvation = -4165.906210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.35650 -40.77849 -39.71981 -39.00155 -36.54058 -36.22674 -35.05810 -34.39316 -32.34965 -30.81002 -30.29823 -29.96699 -27.71141 -26.26876 -24.90007 -24.51940 -23.88166 -22.86399 -22.23468 -21.36301 -19.96806 -19.20789 -18.83909 -18.40055 -18.07484 -17.36506 -16.74563 -16.53615 -16.49505 -16.15675 -16.11989 -15.89990 -15.67558 -15.56125 -15.02802 -14.84646 -14.51014 -14.45952 -14.32246 -14.07078 -13.98222 -13.87159 -13.19283 -13.14351 -13.03583 -12.93850 -12.82145 -12.69847 -12.57692 -12.37938 -12.32849 -12.15707 -12.06643 -11.82544 -11.81083 -11.66430 -11.53203 -10.83272 -10.80815 -10.56616 -10.03814 -9.91661 -9.13462 -8.33488 -6.40956 0.83725 0.95069 1.35155 1.36375 1.38014 1.50236 2.08319 2.32972 2.81784 2.98769 3.01648 3.14757 3.71620 3.73017 3.78749 3.88357 3.96977 4.06500 4.11754 4.23791 4.25225 4.35570 4.37435 4.38891 4.47932 4.56676 4.58189 4.61679 4.73685 4.75691 4.76995 4.79683 4.92919 4.93602 4.98601 5.00521 5.02600 5.10885 5.20230 5.24898 5.37282 5.37966 5.44376 5.80422 5.87373 6.04806 6.21047 6.27869 6.43863 6.54167 6.60851 6.66538 7.26399 8.83438 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003237 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.136902 B = 8648.859934 C = 9241.660387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.084 3.916 3 H 0.085 0.915 4 C -0.159 4.159 5 C 0.105 3.895 6 N -0.574 5.574 7 C 0.512 3.488 8 O -0.551 6.551 9 C 0.512 3.488 10 O -0.551 6.551 11 N -0.588 5.588 12 C 0.130 3.870 13 C 0.047 3.953 14 N -0.516 5.516 15 C 0.161 3.839 16 C -0.556 4.556 17 H 0.023 0.977 18 C 0.007 3.993 19 N -0.952 5.952 20 Si 0.958 3.042 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.239 1.239 24 C 0.052 3.948 25 C 0.123 3.877 26 C 0.067 3.933 27 C 0.056 3.944 28 O -0.381 6.381 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.096 0.904 39 H -0.001 1.001 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.266 0.734 43 H 0.003 0.997 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 29.387 -8.208 30.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.103 0.897 4 C -0.197 4.197 5 C -0.017 4.017 6 N -0.308 5.308 7 C 0.294 3.706 8 O -0.429 6.429 9 C 0.295 3.705 10 O -0.430 6.430 11 N -0.321 5.321 12 C 0.007 3.993 13 C -0.083 4.083 14 N -0.239 5.239 15 C 0.034 3.966 16 C -0.595 4.595 17 H 0.042 0.958 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.162 1.162 24 C -0.077 4.077 25 C 0.002 3.998 26 C -0.054 4.054 27 C -0.022 4.022 28 O -0.299 6.299 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.131 0.869 47 H 0.118 0.882 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.155 29.124 -8.160 30.322 hybrid contribution 0.253 -1.764 1.561 2.370 sum -1.901 27.359 -6.599 28.208 Atomic orbital electron populations 1.21922 0.93258 1.02320 1.03310 1.21231 0.95742 0.96119 0.84216 0.89669 1.21908 0.95250 1.02206 1.00379 1.21667 0.94048 0.94539 0.91420 1.47867 1.61510 1.08214 1.13182 1.20320 0.78382 0.84304 0.87549 1.90803 1.52149 1.76492 1.23428 1.20444 0.87260 0.82265 0.80515 1.90749 1.14154 1.69821 1.68245 1.48357 1.08244 1.35875 1.39598 1.21947 0.77012 0.96256 1.04056 1.22326 1.00545 0.92423 0.92970 1.62487 1.03604 1.11860 1.45947 1.20097 0.95025 0.86829 0.94659 1.21918 1.30447 0.98929 1.08197 0.95849 1.26046 0.97534 0.98034 0.97419 1.70120 1.47041 1.12278 1.29718 0.85559 0.79071 0.78709 0.78644 1.18873 1.21363 1.16210 1.22271 0.89156 0.96616 0.99678 1.21939 0.97539 0.85772 0.94569 1.23272 1.01357 1.01389 0.79420 1.22978 0.81515 0.96417 1.01272 1.87533 1.35092 1.65749 1.41564 0.93552 0.89766 0.91404 0.87079 0.93611 0.90949 0.86409 0.86740 0.90419 0.88586 0.98208 0.94535 0.94067 0.92510 0.97866 0.89081 0.89465 0.86915 0.88206 0.90817 0.89497 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.43 71.98 0.68 -1.01 16 2 C 0.08 0.97 2.64 28.93 0.08 1.04 16 3 H 0.09 0.52 7.27 -2.39 -0.02 0.50 16 4 C -0.16 -2.36 5.18 29.38 0.15 -2.21 16 5 C 0.11 1.72 5.35 87.21 0.47 2.19 16 6 N -0.57 -12.38 2.56 -818.97 -2.10 -14.48 16 7 C 0.51 16.51 5.42 87.27 0.47 16.98 16 8 O -0.55 -22.06 16.54 -3.23 -0.05 -22.11 16 9 C 0.51 17.77 5.40 87.27 0.47 18.24 16 10 O -0.55 -21.59 16.58 -3.27 -0.05 -21.65 16 11 N -0.59 -18.97 2.95 -819.50 -2.42 -21.39 16 12 C 0.13 3.84 6.52 86.35 0.56 4.40 16 13 C 0.05 1.76 5.35 86.38 0.46 2.22 16 14 N -0.52 -20.40 4.83 -899.81 -4.35 -24.75 16 15 C 0.16 7.43 4.25 85.55 0.36 7.79 16 16 C -0.56 -32.04 8.36 25.60 0.21 -31.82 16 17 H 0.02 1.55 6.15 -2.91 -0.02 1.54 16 18 C 0.01 0.43 5.47 84.65 0.46 0.90 16 19 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 20 Si 0.96 43.56 27.37 68.60 1.88 45.44 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.24 -9.83 6.69 99.48 0.67 -9.17 16 24 C 0.05 2.05 5.00 86.38 0.43 2.48 16 25 C 0.12 3.87 6.58 86.35 0.57 4.43 16 26 C 0.07 0.99 6.39 86.49 0.55 1.55 16 27 C 0.06 0.51 6.49 72.42 0.47 0.98 16 28 O -0.38 -5.63 9.82 -144.97 -1.42 -7.05 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.11 1.15 8.13 -2.38 -0.02 1.13 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.50 7.30 -2.39 -0.02 1.49 16 35 H 0.12 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.08 2.34 6.37 -2.39 -0.02 2.32 16 38 H 0.10 3.30 7.96 -2.39 -0.02 3.28 16 39 H 0.00 -0.02 7.43 -2.39 -0.02 -0.04 16 40 H 0.04 1.64 7.33 -2.38 -0.02 1.62 16 41 H 0.04 1.82 7.29 -2.38 -0.02 1.81 16 42 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 43 H 0.00 0.15 6.41 -2.39 -0.02 0.13 16 44 H 0.09 3.41 8.11 -2.39 -0.02 3.39 16 45 H 0.09 2.83 7.10 -2.39 -0.02 2.81 16 46 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.34 6.38 -2.39 -0.02 1.32 16 49 H 0.09 0.33 7.21 -2.39 -0.02 0.31 16 50 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -81.83 385.32 -0.92 -82.75 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.89 Total: 15.65 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 6.41 Total: 28.15 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -8.57 Total: -121.18 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -1.53 Total: -50.81 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -81.83 -0.92 -82.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120396919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.621 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds