Wall clock time and date at job start Tue Mar 31 2020 23:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00045 * 2 1 4 4 N 1.34774 * 120.00379 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99670 * 0.02562 * 4 2 1 6 6 C 1.46497 * 120.00521 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.47123 * 89.99855 * 6 4 2 8 8 O 1.21275 * 119.99779 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99626 * 180.02562 * 7 6 4 10 10 C 1.47162 * 121.08778 * 359.97438 * 9 7 6 11 11 C 1.53281 * 108.56848 * 231.26600 * 10 9 7 12 12 H 1.08998 * 109.51110 * 66.95795 * 11 10 9 13 13 C 1.52996 * 109.51314 * 187.06225 * 11 10 9 14 14 O 1.43127 * 109.21574 * 306.98307 * 11 10 9 15 15 C 1.41876 * 114.38015 * 60.89568 * 14 11 10 16 16 C 1.54355 * 110.75410 * 176.68165 * 15 14 11 17 17 C 1.54471 * 102.95812 * 276.12001 * 16 15 14 18 18 N 1.47090 * 107.29113 * 338.86651 * 17 16 15 19 19 C 1.36931 * 125.62809 * 178.88317 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69490 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69375 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47571 * 108.73734 * 358.61975 * 18 17 16 28 28 C 1.47348 * 121.07728 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46710 * 240.00012 * 1 2 3 30 30 H 1.08998 * 109.46943 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46929 * 120.00321 * 1 2 3 32 32 H 1.08996 * 109.47205 * 269.99704 * 5 4 2 33 33 H 1.09001 * 109.46973 * 29.99994 * 5 4 2 34 34 H 1.09004 * 109.46722 * 149.99671 * 5 4 2 35 35 H 1.09001 * 109.47069 * 330.00029 * 6 4 2 36 36 H 1.08998 * 109.47293 * 210.00266 * 6 4 2 37 37 H 1.09001 * 109.61589 * 350.98617 * 10 9 7 38 38 H 1.09000 * 109.62283 * 111.53726 * 10 9 7 39 39 H 1.09004 * 109.46910 * 59.99682 * 13 11 10 40 40 H 1.09003 * 109.47201 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47259 * 300.00082 * 13 11 10 42 42 H 1.09000 * 110.72866 * 34.67439 * 16 15 14 43 43 H 1.09006 * 110.73293 * 157.79783 * 16 15 14 44 44 H 1.08994 * 109.99520 * 219.38000 * 17 16 15 45 45 H 1.08997 * 109.76859 * 98.22587 * 17 16 15 46 46 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.37362 * 142.38865 * 27 18 17 48 48 H 1.09005 * 110.37765 * 264.62019 * 27 18 17 49 49 H 1.08995 * 109.67374 * 11.07291 * 28 9 7 50 50 H 1.08999 * 109.67322 * 250.53469 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4484 -2.4359 0.0005 6 6 3.6459 -1.1672 0.0000 7 6 4.1488 -1.1662 1.4206 8 8 3.3610 -1.1660 2.3426 9 7 5.4740 -1.1655 1.6662 10 6 6.4508 -1.1663 0.5656 11 6 7.4552 -2.2992 0.8052 12 1 6.9492 -3.2601 0.7115 13 6 8.5806 -2.2113 -0.2275 14 8 8.0031 -2.1725 2.1213 15 6 7.0458 -2.2582 3.1650 16 6 7.7341 -2.1945 4.5451 17 6 8.1665 -3.6580 4.7844 18 7 7.3304 -4.5074 3.9225 19 6 7.4148 -5.8705 3.8227 20 1 6.7494 -6.4058 3.1616 21 6 8.3556 -6.5644 4.5712 22 7 9.1669 -5.9119 5.3765 23 14 8.4759 -8.4230 4.4292 24 1 9.5559 -8.9187 5.3198 25 1 7.1836 -9.0348 4.8306 26 1 8.7837 -8.7933 3.0244 27 6 6.3814 -3.6487 3.1878 28 6 5.9918 -1.1651 3.0457 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.2664 -2.7504 1.0281 33 1 0.4962 -2.3057 -0.5137 34 1 2.0378 -3.1956 -0.5130 35 1 4.0091 -0.2775 -0.5146 36 1 4.0090 -2.0575 -0.5134 37 1 5.9353 -1.3283 -0.3811 38 1 6.9754 -0.2112 0.5411 39 1 9.0871 -1.2509 -0.1320 40 1 9.2946 -3.0169 -0.0563 41 1 8.1620 -2.3032 -1.2298 42 1 8.6004 -1.5337 4.5140 43 1 7.0309 -1.8706 5.3124 44 1 8.0129 -3.9258 5.8297 45 1 9.2165 -3.7803 4.5188 46 1 9.8247 -6.3968 5.8993 47 1 6.2419 -4.0194 2.1724 48 1 5.4255 -3.6060 3.7101 49 1 5.1778 -1.3626 3.7433 50 1 6.4405 -0.1972 3.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131639324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:24 Heat of formation + Delta-G solvation = -65.138616 kcal Electronic energy + Delta-G solvation = -31769.660164 eV Core-core repulsion = 27605.758851 eV Total energy + Delta-G solvation = -4163.901313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80250 -39.90907 -38.48422 -36.34804 -35.65134 -34.58979 -33.17672 -31.33336 -31.09806 -29.50590 -28.82232 -27.81278 -26.50448 -26.42644 -25.26322 -23.58067 -21.88023 -20.48730 -20.08524 -19.38173 -18.77237 -17.56223 -17.25373 -16.98314 -16.82124 -16.21346 -15.81586 -15.40889 -15.18249 -14.67009 -14.58517 -14.16504 -13.98107 -13.67618 -13.53845 -13.43781 -13.20629 -13.13791 -12.97233 -12.64039 -12.48748 -12.42563 -12.26832 -12.12113 -12.01303 -11.92969 -11.72247 -11.52055 -11.03946 -10.86821 -10.85241 -10.44453 -10.24008 -10.21044 -10.12150 -10.11653 -9.88137 -9.67745 -9.52889 -8.90772 -8.56806 -8.34798 -6.79755 -5.68692 -3.01668 2.28838 2.56879 2.62167 3.03110 3.40803 3.44705 3.46457 3.87052 4.32166 4.35757 4.50194 4.68249 4.72796 4.78422 4.88622 4.98417 5.02279 5.06607 5.07756 5.13169 5.20739 5.23892 5.36565 5.46472 5.47770 5.51837 5.57272 5.61318 5.62026 5.72054 5.85809 5.92447 6.00324 6.05440 6.19409 6.20257 6.31803 6.43423 6.49125 6.60661 6.66548 7.04141 7.31719 7.55022 7.64527 7.71485 7.85502 7.89119 8.12034 8.28064 9.23831 9.83811 10.50262 11.43026 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003163 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.818347 B = 8851.581788 C = 9482.417588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.517 3.483 3 O -0.545 6.545 4 N -0.602 5.602 5 C 0.078 3.922 6 C 0.097 3.903 7 C 0.502 3.498 8 O -0.531 6.531 9 N -0.611 5.611 10 C 0.078 3.922 11 C 0.070 3.930 12 H 0.068 0.932 13 C -0.141 4.141 14 O -0.346 6.346 15 C 0.092 3.908 16 C -0.130 4.130 17 C 0.183 3.817 18 N -0.599 5.599 19 C -0.227 4.227 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.286 1.286 26 H -0.286 1.286 27 C 0.123 3.877 28 C 0.099 3.901 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.253 0.747 47 H 0.037 0.963 48 H 0.024 0.976 49 H 0.101 0.899 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 10.458 -14.640 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.307 3.693 3 O -0.422 6.422 4 N -0.335 5.335 5 C -0.065 4.065 6 C -0.030 4.030 7 C 0.289 3.711 8 O -0.406 6.406 9 N -0.346 5.346 10 C -0.045 4.045 11 C 0.012 3.988 12 H 0.086 0.914 13 C -0.198 4.198 14 O -0.264 6.264 15 C 0.051 3.949 16 C -0.168 4.168 17 C 0.059 3.941 18 N -0.325 5.325 19 C -0.356 4.356 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.004 4.004 28 C -0.024 4.024 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.119 0.881 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.476 10.861 -14.013 21.119 hybrid contribution -0.077 -1.203 -0.052 1.207 sum -11.553 9.658 -14.065 20.605 Atomic orbital electron populations 1.21922 0.91371 1.05442 1.04235 1.20827 0.90813 0.82796 0.74905 1.90712 1.70808 1.31109 1.49589 1.47465 1.05174 1.07157 1.73710 1.21903 0.97009 0.84703 1.02885 1.21349 0.81576 1.05380 0.94678 1.21065 0.81813 0.76191 0.92067 1.90684 1.54604 1.49311 1.46051 1.48205 1.05201 1.73510 1.07655 1.22562 0.91422 1.00809 0.89753 1.22438 0.94442 0.96974 0.84984 0.91398 1.21688 0.98179 1.03509 0.96462 1.87853 1.32896 1.93099 1.12579 1.22316 0.88977 0.94417 0.89198 1.22843 1.00059 1.01700 0.92243 1.21154 0.95212 0.83072 0.94702 1.44407 1.37927 1.02298 1.47853 1.18954 1.15007 0.80516 1.21103 0.90782 1.24780 0.98350 0.98013 0.99172 1.69953 1.23156 1.33650 1.30032 0.86207 0.77188 0.85105 0.77287 1.21569 1.21237 1.21234 1.21905 0.93017 0.89551 0.95924 1.22164 0.97876 0.99315 0.83012 0.89099 0.89037 0.89354 0.91717 0.90529 0.90801 0.86941 0.87430 0.89433 0.90294 0.91815 0.90980 0.91273 0.90846 0.90940 0.93871 0.93106 0.93707 0.94465 0.95871 0.88120 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.87 36.01 0.32 -0.91 16 2 C 0.52 6.10 7.78 -10.99 -0.09 6.02 16 3 O -0.55 -8.69 16.66 5.56 0.09 -8.60 16 4 N -0.60 -6.30 2.36 -182.96 -0.43 -6.73 16 5 C 0.08 0.56 10.29 59.85 0.62 1.17 16 6 C 0.10 1.03 4.30 -5.20 -0.02 1.01 16 7 C 0.50 7.35 7.78 -10.99 -0.09 7.27 16 8 O -0.53 -9.71 15.92 5.56 0.09 -9.62 16 9 N -0.61 -8.63 2.96 -172.71 -0.51 -9.14 16 10 C 0.08 0.87 5.81 -3.54 -0.02 0.85 16 11 C 0.07 0.97 3.20 -26.59 -0.08 0.88 16 12 H 0.07 1.03 6.26 -51.93 -0.32 0.71 16 13 C -0.14 -1.55 9.57 37.16 0.36 -1.19 16 14 O -0.35 -6.22 9.92 -35.22 -0.35 -6.57 16 15 C 0.09 1.69 0.83 -89.67 -0.07 1.61 16 16 C -0.13 -2.50 6.12 -25.25 -0.15 -2.65 16 17 C 0.18 4.55 5.39 -2.95 -0.02 4.54 16 18 N -0.60 -15.62 3.40 -170.30 -0.58 -16.20 16 19 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16 20 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.12 2.64 6.18 -2.87 -0.02 2.62 16 28 C 0.10 1.58 5.29 -3.93 -0.02 1.56 16 29 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.09 0.39 7.40 -51.93 -0.38 0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.33 6.44 -51.93 -0.33 0.00 16 34 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 35 H 0.11 1.16 7.29 -51.93 -0.38 0.79 16 36 H 0.11 0.82 7.42 -51.93 -0.39 0.43 16 37 H 0.09 0.69 6.05 -51.93 -0.31 0.38 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.27 7.99 -51.93 -0.42 0.86 16 44 H 0.04 1.17 7.52 -51.93 -0.39 0.78 16 45 H 0.05 1.41 7.37 -51.93 -0.38 1.03 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.04 0.79 6.09 -51.93 -0.32 0.48 16 48 H 0.02 0.53 7.82 -51.93 -0.41 0.12 16 49 H 0.10 1.75 6.86 -51.93 -0.36 1.39 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -37.43 391.35 -7.93 -45.36 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.15 Total: -0.79 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 0.46 Total: 15.89 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.95 Total: -58.80 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.17 Total: -24.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.43 -7.93 -45.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131639324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.777 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds