Wall clock time and date at job start Tue Mar 31 2020 23:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00045 * 2 1 4 4 N 1.34774 * 120.00379 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99670 * 0.02562 * 4 2 1 6 6 C 1.46497 * 120.00521 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.47123 * 89.99855 * 6 4 2 8 8 O 1.21275 * 119.99779 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99626 * 180.02562 * 7 6 4 10 10 C 1.47162 * 121.08778 * 359.97438 * 9 7 6 11 11 C 1.53281 * 108.56848 * 231.26600 * 10 9 7 12 12 H 1.08998 * 109.51110 * 66.95795 * 11 10 9 13 13 C 1.52996 * 109.51314 * 187.06225 * 11 10 9 14 14 O 1.43127 * 109.21574 * 306.98307 * 11 10 9 15 15 C 1.41876 * 114.38015 * 60.89568 * 14 11 10 16 16 C 1.54355 * 110.75410 * 176.68165 * 15 14 11 17 17 C 1.54471 * 102.95812 * 276.12001 * 16 15 14 18 18 N 1.47090 * 107.29113 * 338.86651 * 17 16 15 19 19 C 1.36931 * 125.62809 * 178.88317 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69490 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69375 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47571 * 108.73734 * 358.61975 * 18 17 16 28 28 C 1.47348 * 121.07728 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46710 * 240.00012 * 1 2 3 30 30 H 1.08998 * 109.46943 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.46929 * 120.00321 * 1 2 3 32 32 H 1.08996 * 109.47205 * 269.99704 * 5 4 2 33 33 H 1.09001 * 109.46973 * 29.99994 * 5 4 2 34 34 H 1.09004 * 109.46722 * 149.99671 * 5 4 2 35 35 H 1.09001 * 109.47069 * 330.00029 * 6 4 2 36 36 H 1.08998 * 109.47293 * 210.00266 * 6 4 2 37 37 H 1.09001 * 109.61589 * 350.98617 * 10 9 7 38 38 H 1.09000 * 109.62283 * 111.53726 * 10 9 7 39 39 H 1.09004 * 109.46910 * 59.99682 * 13 11 10 40 40 H 1.09003 * 109.47201 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47259 * 300.00082 * 13 11 10 42 42 H 1.09000 * 110.72866 * 34.67439 * 16 15 14 43 43 H 1.09006 * 110.73293 * 157.79783 * 16 15 14 44 44 H 1.08994 * 109.99520 * 219.38000 * 17 16 15 45 45 H 1.08997 * 109.76859 * 98.22587 * 17 16 15 46 46 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.37362 * 142.38865 * 27 18 17 48 48 H 1.09005 * 110.37765 * 264.62019 * 27 18 17 49 49 H 1.08995 * 109.67374 * 11.07291 * 28 9 7 50 50 H 1.08999 * 109.67322 * 250.53469 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4484 -2.4359 0.0005 6 6 3.6459 -1.1672 0.0000 7 6 4.1488 -1.1662 1.4206 8 8 3.3610 -1.1660 2.3426 9 7 5.4740 -1.1655 1.6662 10 6 6.4508 -1.1663 0.5656 11 6 7.4552 -2.2992 0.8052 12 1 6.9492 -3.2601 0.7115 13 6 8.5806 -2.2113 -0.2275 14 8 8.0031 -2.1725 2.1213 15 6 7.0458 -2.2582 3.1650 16 6 7.7341 -2.1945 4.5451 17 6 8.1665 -3.6580 4.7844 18 7 7.3304 -4.5074 3.9225 19 6 7.4148 -5.8705 3.8227 20 1 6.7494 -6.4058 3.1616 21 6 8.3556 -6.5644 4.5712 22 7 9.1669 -5.9119 5.3765 23 14 8.4759 -8.4230 4.4292 24 1 9.5559 -8.9187 5.3198 25 1 7.1836 -9.0348 4.8306 26 1 8.7837 -8.7933 3.0244 27 6 6.3814 -3.6487 3.1878 28 6 5.9918 -1.1651 3.0457 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.2664 -2.7504 1.0281 33 1 0.4962 -2.3057 -0.5137 34 1 2.0378 -3.1956 -0.5130 35 1 4.0091 -0.2775 -0.5146 36 1 4.0090 -2.0575 -0.5134 37 1 5.9353 -1.3283 -0.3811 38 1 6.9754 -0.2112 0.5411 39 1 9.0871 -1.2509 -0.1320 40 1 9.2946 -3.0169 -0.0563 41 1 8.1620 -2.3032 -1.2298 42 1 8.6004 -1.5337 4.5140 43 1 7.0309 -1.8706 5.3124 44 1 8.0129 -3.9258 5.8297 45 1 9.2165 -3.7803 4.5188 46 1 9.8247 -6.3968 5.8993 47 1 6.2419 -4.0194 2.1724 48 1 5.4255 -3.6060 3.7101 49 1 5.1778 -1.3626 3.7433 50 1 6.4405 -0.1972 3.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131639324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:23 Heat of formation + Delta-G solvation = -92.135004 kcal Electronic energy + Delta-G solvation = -31770.830815 eV Core-core repulsion = 27605.758851 eV Total energy + Delta-G solvation = -4165.071965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96106 -40.95477 -39.70937 -37.93975 -36.51846 -35.83705 -34.86984 -32.97991 -31.89397 -31.10173 -30.12742 -28.85580 -27.77609 -27.31910 -26.73492 -25.15212 -23.18157 -22.03337 -21.46029 -20.53118 -19.85557 -19.00022 -18.54150 -18.13626 -17.96353 -17.38095 -16.80931 -16.77558 -16.47275 -16.15381 -15.94861 -15.59397 -15.46637 -15.11424 -14.76017 -14.43118 -14.27861 -13.99749 -13.97339 -13.71009 -13.59855 -13.51188 -13.32868 -13.12678 -13.09799 -13.03847 -12.95014 -12.78537 -12.70566 -12.67588 -12.23653 -12.10501 -12.04083 -11.99592 -11.71780 -11.60709 -11.12369 -10.99968 -10.91599 -10.70925 -9.78402 -9.56705 -8.92942 -7.86629 -5.22911 1.39774 1.43211 1.47263 1.48344 1.53727 1.80162 2.11774 2.47007 2.62096 3.30573 3.36141 3.49562 3.60555 3.66622 3.72628 3.88289 3.98496 4.03171 4.11801 4.16580 4.26351 4.29138 4.35990 4.42666 4.47358 4.52608 4.55503 4.58587 4.66241 4.68375 4.74157 4.77980 4.89474 4.92286 4.93153 5.02076 5.07608 5.11012 5.18759 5.33790 5.35724 5.38499 5.60641 5.72710 6.15407 6.23980 6.29742 6.37153 6.98452 7.06653 7.10097 7.72736 8.38241 9.23720 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.003163 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.818347 B = 8851.581788 C = 9482.417588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.597 6.597 4 N -0.603 5.603 5 C 0.072 3.928 6 C 0.097 3.903 7 C 0.495 3.505 8 O -0.576 6.576 9 N -0.613 5.613 10 C 0.082 3.918 11 C 0.061 3.939 12 H 0.050 0.950 13 C -0.134 4.134 14 O -0.369 6.369 15 C 0.109 3.891 16 C -0.120 4.120 17 C 0.193 3.807 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.079 0.921 21 C -0.064 4.064 22 N -0.950 5.950 23 Si 0.981 3.019 24 H -0.293 1.293 25 H -0.277 1.277 26 H -0.275 1.275 27 C 0.125 3.875 28 C 0.107 3.893 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.009 0.991 45 H 0.013 0.987 46 H 0.248 0.752 47 H 0.040 0.960 48 H 0.013 0.987 49 H 0.083 0.917 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 10.656 -17.624 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.478 6.478 4 N -0.335 5.335 5 C -0.069 4.069 6 C -0.029 4.029 7 C 0.284 3.716 8 O -0.455 6.455 9 N -0.347 5.347 10 C -0.040 4.040 11 C 0.003 3.997 12 H 0.068 0.932 13 C -0.192 4.192 14 O -0.288 6.288 15 C 0.068 3.932 16 C -0.159 4.159 17 C 0.068 3.932 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.809 3.191 24 H -0.219 1.219 25 H -0.203 1.203 26 H -0.200 1.200 27 C -0.001 4.001 28 C -0.016 4.016 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.101 0.899 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.803 11.043 -17.047 24.009 hybrid contribution 0.321 -1.304 0.854 1.592 sum -12.481 9.739 -16.192 22.646 Atomic orbital electron populations 1.21954 0.88105 1.06031 1.06213 1.21675 0.92586 0.82371 0.73767 1.90679 1.72098 1.32898 1.52107 1.47685 1.05309 1.07982 1.72530 1.22128 0.98664 0.83677 1.02444 1.21512 0.82103 1.07377 0.91952 1.21894 0.81433 0.74906 0.93415 1.90662 1.55698 1.51360 1.47771 1.48327 1.05838 1.73031 1.07490 1.22746 0.90566 1.00339 0.90335 1.22748 0.96061 0.97297 0.83556 0.93181 1.21709 0.96961 1.03099 0.97403 1.87830 1.33633 1.93110 1.14237 1.22014 0.89114 0.93092 0.89018 1.22728 1.01332 0.97957 0.93859 1.20857 0.93304 0.86488 0.92575 1.44700 1.38811 1.02393 1.48624 1.19360 1.15080 0.82009 1.21082 0.90365 1.25679 0.98192 1.02785 0.99042 1.70191 1.23654 1.35175 1.30798 0.85124 0.77140 0.79360 0.77520 1.21884 1.20307 1.20034 1.21985 0.91936 0.91064 0.95120 1.21888 0.96475 0.98895 0.84383 0.88237 0.89296 0.85926 0.93610 0.87319 0.88995 0.86234 0.83750 0.85350 0.88700 0.90811 0.93389 0.87449 0.89105 0.89191 0.97328 0.96868 0.94312 0.94196 0.96888 0.89860 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.87 71.24 0.63 -1.35 16 2 C 0.50 11.11 7.78 87.66 0.68 11.79 16 3 O -0.60 -18.68 16.66 -3.03 -0.05 -18.73 16 4 N -0.60 -11.22 2.36 -851.14 -2.01 -13.23 16 5 C 0.07 0.83 10.29 127.77 1.31 2.14 16 6 C 0.10 1.80 4.30 85.63 0.37 2.17 16 7 C 0.49 13.77 7.78 87.66 0.68 14.45 16 8 O -0.58 -21.02 15.92 -3.01 -0.05 -21.07 16 9 N -0.61 -16.19 2.96 -818.74 -2.42 -18.61 16 10 C 0.08 1.56 5.81 86.35 0.50 2.06 16 11 C 0.06 1.57 3.20 30.69 0.10 1.66 16 12 H 0.05 1.45 6.26 -2.39 -0.01 1.44 16 13 C -0.13 -2.61 9.57 71.98 0.69 -1.92 16 14 O -0.37 -13.00 9.92 -148.95 -1.48 -14.48 16 15 C 0.11 3.98 0.83 -10.18 -0.01 3.97 16 16 C -0.12 -4.69 6.12 31.55 0.19 -4.50 16 17 C 0.19 10.04 5.39 86.77 0.47 10.51 16 18 N -0.62 -33.43 3.40 -692.72 -2.36 -35.79 16 19 C -0.25 -14.31 10.28 84.03 0.86 -13.45 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 22 N -0.95 -58.58 10.31 21.65 0.22 -58.36 16 23 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.12 5.46 6.18 86.56 0.53 6.00 16 28 C 0.11 3.33 5.29 85.99 0.46 3.78 16 29 H 0.10 1.05 8.11 -2.39 -0.02 1.03 16 30 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 31 H 0.12 0.61 7.40 -2.39 -0.02 0.59 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.52 6.44 -2.39 -0.02 0.50 16 34 H 0.09 0.73 7.89 -2.39 -0.02 0.71 16 35 H 0.12 2.10 7.29 -2.39 -0.02 2.09 16 36 H 0.14 1.55 7.42 -2.39 -0.02 1.54 16 37 H 0.13 1.40 6.05 -2.39 -0.01 1.38 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.09 3.17 7.99 -2.38 -0.02 3.15 16 44 H 0.01 0.49 7.52 -2.39 -0.02 0.48 16 45 H 0.01 0.77 7.37 -2.39 -0.02 0.75 16 46 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 47 H 0.04 1.71 6.09 -2.39 -0.01 1.70 16 48 H 0.01 0.61 7.82 -2.38 -0.02 0.60 16 49 H 0.08 2.90 6.86 -2.39 -0.02 2.89 16 50 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -87.38 391.35 2.76 -84.63 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.93 Total: 13.09 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 7.94 Total: 34.07 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.56 Total: -125.98 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -1.58 Total: -54.28 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -87.38 2.76 -84.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131639324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.509 kcal (2) G-P(sol) polarization free energy of solvation -87.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds