Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47524 * 2 1 4 4 O 1.21283 * 120.00022 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00354 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00493 * 179.97438 * 5 3 2 7 7 C 1.50690 * 109.47228 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00444 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00008 * 180.02562 * 7 6 5 10 10 C 1.47166 * 121.08102 * 0.02562 * 9 7 6 11 11 C 1.53277 * 108.55728 * 128.72836 * 10 9 7 12 12 H 1.09007 * 109.51346 * 293.05361 * 11 10 9 13 13 C 1.53002 * 109.51007 * 172.95572 * 11 10 9 14 14 O 1.43121 * 109.22410 * 53.03074 * 11 10 9 15 15 C 1.41886 * 114.38872 * 299.11345 * 14 11 10 16 16 C 1.54368 * 110.72548 * 296.61819 * 15 14 11 17 17 C 1.54469 * 102.95715 * 276.11742 * 16 15 14 18 18 N 1.47090 * 107.28755 * 338.86013 * 17 16 15 19 19 C 1.36931 * 125.62809 * 178.89094 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69490 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69375 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47571 * 108.73734 * 358.62753 * 18 17 16 28 28 C 1.47329 * 121.07957 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.47702 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46941 * 300.00777 * 1 2 3 31 31 H 1.09010 * 109.46538 * 60.00107 * 1 2 3 32 32 H 1.08996 * 109.46941 * 239.99223 * 2 1 3 33 33 H 1.09010 * 109.46538 * 119.99893 * 2 1 3 34 34 H 0.97006 * 119.99424 * 359.97438 * 5 3 2 35 35 H 1.09002 * 109.47054 * 59.99630 * 6 5 3 36 36 H 1.08998 * 109.46761 * 299.99733 * 6 5 3 37 37 H 1.08995 * 109.62774 * 248.45120 * 10 9 7 38 38 H 1.09000 * 109.61978 * 9.00825 * 10 9 7 39 39 H 1.08999 * 109.47492 * 60.00141 * 13 11 10 40 40 H 1.09006 * 109.46625 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.46956 * 299.99411 * 13 11 10 42 42 H 1.08997 * 110.73483 * 34.67323 * 16 15 14 43 43 H 1.08998 * 110.72959 * 157.79652 * 16 15 14 44 44 H 1.08998 * 109.99524 * 219.37738 * 17 16 15 45 45 H 1.09000 * 109.77048 * 98.21837 * 17 16 15 46 46 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 47 47 H 1.09005 * 110.37948 * 142.39032 * 27 18 17 48 48 H 1.09005 * 110.37765 * 264.62019 * 27 18 17 49 49 H 1.09007 * 109.67501 * 109.44199 * 28 9 7 50 50 H 1.09000 * 109.70360 * 348.92940 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8460 3.0481 -0.0011 7 6 5.3529 3.0480 -0.0010 8 8 5.9593 1.9977 -0.0009 9 7 6.0268 4.2152 -0.0009 10 6 5.3153 5.5034 -0.0004 11 6 5.8755 6.3697 1.1332 12 1 5.6178 5.9236 2.0938 13 6 5.2774 7.7752 1.0456 14 8 7.2991 6.4472 1.0076 15 6 7.9638 5.1966 1.0929 16 6 7.7556 4.5611 2.4843 17 6 8.8522 5.2334 3.3396 18 7 9.8800 5.7368 2.4157 19 6 11.0123 6.4173 2.7762 20 1 11.7111 6.7421 2.0194 21 6 11.2620 6.6898 4.1142 22 7 10.4101 6.2945 5.0363 23 14 12.8027 7.6249 4.6052 24 1 12.8317 7.7913 6.0805 25 1 14.0024 6.8661 4.1689 26 1 12.7990 8.9607 3.9564 27 6 9.4926 5.3818 1.0367 28 6 7.4999 4.2428 -0.0013 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.9878 0.9296 -0.0005 35 1 3.4829 3.5623 0.8889 36 1 3.4824 3.5617 -0.8911 37 1 5.4680 6.0064 -0.9552 38 1 4.2507 5.3334 0.1607 39 1 4.1929 7.7150 1.1369 40 1 5.6760 8.3905 1.8523 41 1 5.5371 8.2214 0.0856 42 1 6.7637 4.7949 2.8708 43 1 7.9075 3.4826 2.4425 44 1 9.2915 4.5055 4.0217 45 1 8.4236 6.0616 3.9040 46 1 10.5844 6.4853 5.9713 47 1 9.7523 6.1876 0.3501 48 1 9.9781 4.4543 0.7329 49 1 7.8601 4.5915 -0.9693 50 1 7.8863 3.2428 0.1954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131645965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = -80.721784 kcal Electronic energy + Delta-G solvation = -30965.211061 eV Core-core repulsion = 26800.634010 eV Total energy + Delta-G solvation = -4164.577050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90477 -39.95172 -38.81369 -36.44398 -34.88817 -34.70625 -33.19029 -33.06219 -31.37504 -29.81397 -28.96978 -27.95666 -26.61068 -25.53158 -24.28357 -23.39748 -21.96109 -20.69910 -20.26706 -19.96152 -19.01071 -17.93120 -17.10143 -17.02004 -16.62375 -16.43517 -16.10733 -15.62885 -15.41559 -14.76074 -14.62794 -14.32552 -14.25803 -14.12718 -13.71733 -13.48434 -13.28731 -13.12646 -12.67763 -12.65553 -12.49987 -12.30462 -12.18771 -12.09073 -12.01239 -11.85573 -11.63340 -11.51032 -11.03837 -10.93388 -10.85456 -10.49915 -10.25311 -10.23063 -10.16724 -10.12771 -9.93264 -9.71599 -9.57145 -9.49351 -8.57351 -8.50780 -6.82215 -5.68794 -3.02162 2.25517 2.35041 2.42315 3.02710 3.42579 3.46416 3.47800 3.80028 4.06757 4.40645 4.49449 4.60013 4.71754 4.73412 4.78052 4.93678 4.96715 4.99080 5.05368 5.11877 5.21457 5.28640 5.41516 5.46096 5.47045 5.54798 5.57123 5.58636 5.72894 5.75127 5.83367 5.85753 5.95531 5.97810 6.07729 6.15847 6.22741 6.43688 6.46563 6.50991 6.61196 7.08665 7.16626 7.55275 7.61936 7.63736 7.79622 7.83884 7.89421 8.26592 9.23276 9.83263 10.48630 11.43040 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002459 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.361558 B =11383.357352 C =11756.371955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.543 6.543 5 N -0.720 5.720 6 C 0.101 3.899 7 C 0.512 3.488 8 O -0.538 6.538 9 N -0.604 5.604 10 C 0.074 3.926 11 C 0.068 3.932 12 H 0.066 0.934 13 C -0.142 4.142 14 O -0.342 6.342 15 C 0.093 3.907 16 C -0.166 4.166 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.291 1.291 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.153 3.847 28 C 0.098 3.902 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.413 0.587 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.252 0.748 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.075 0.925 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.823 -8.207 -11.966 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.420 6.420 5 N -0.376 5.376 6 C -0.027 4.027 7 C 0.300 3.700 8 O -0.415 6.415 9 N -0.337 5.337 10 C -0.049 4.049 11 C 0.010 3.990 12 H 0.084 0.916 13 C -0.199 4.199 14 O -0.260 6.260 15 C 0.051 3.949 16 C -0.204 4.204 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.212 1.212 26 H -0.212 1.212 27 C 0.026 3.974 28 C -0.025 4.025 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.251 0.749 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.094 0.906 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.849 -7.845 -11.779 22.779 hybrid contribution 0.990 0.031 0.408 1.071 sum -16.859 -7.814 -11.371 21.785 Atomic orbital electron populations 1.21535 0.92834 1.01695 1.03403 1.21622 0.98698 0.93293 1.04706 1.20841 0.81461 0.92214 0.75435 1.90710 1.55298 1.46555 1.49450 1.45811 1.07776 1.08184 1.75819 1.21079 0.91200 0.85701 1.04689 1.20417 0.89598 0.83669 0.76362 1.90695 1.69745 1.30637 1.50449 1.48111 1.07547 1.05538 1.72547 1.22646 0.97019 0.84148 1.01109 1.22448 0.83210 0.96556 0.96811 0.91574 1.21699 0.99825 0.94729 1.03684 1.87939 1.16549 1.28494 1.93064 1.22407 0.95180 0.83652 0.93631 1.23369 1.00879 0.99888 0.96285 1.21097 0.86082 0.96458 0.90221 1.44407 1.23211 1.65621 0.99278 1.18994 0.96528 1.28021 0.91808 0.90414 1.24798 0.98790 1.01178 0.95723 1.69958 1.36070 1.51033 0.99982 0.86178 0.82472 0.79717 0.77256 1.21664 1.21192 1.21166 1.21327 0.87592 0.98437 0.90043 1.22222 0.78134 1.02302 0.99822 0.91964 0.91904 0.91976 0.88710 0.88627 0.74939 0.88324 0.88387 0.89947 0.89021 0.91169 0.90942 0.91672 0.92068 0.91721 0.93984 0.93454 0.93761 0.93050 0.94585 0.90629 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.20 37.16 0.34 -0.57 16 2 C -0.14 -0.92 6.42 -27.89 -0.18 -1.09 16 3 C 0.51 5.07 7.83 -10.99 -0.09 4.98 16 4 O -0.54 -7.19 15.98 5.55 0.09 -7.10 16 5 N -0.72 -6.85 5.53 -61.48 -0.34 -7.19 16 6 C 0.10 0.99 4.53 -5.20 -0.02 0.96 16 7 C 0.51 6.27 7.78 -10.99 -0.09 6.19 16 8 O -0.54 -8.04 15.16 5.55 0.08 -7.96 16 9 N -0.60 -7.44 2.95 -172.68 -0.51 -7.95 16 10 C 0.07 0.75 5.81 -3.54 -0.02 0.73 16 11 C 0.07 0.89 3.19 -26.59 -0.08 0.80 16 12 H 0.07 0.92 6.24 -51.93 -0.32 0.59 16 13 C -0.14 -1.51 9.57 37.16 0.36 -1.15 16 14 O -0.34 -5.96 9.93 -35.22 -0.35 -6.31 16 15 C 0.09 1.62 0.84 -89.64 -0.08 1.54 16 16 C -0.17 -3.17 5.87 -25.24 -0.15 -3.32 16 17 C 0.19 4.59 5.39 -2.95 -0.02 4.58 16 18 N -0.60 -15.40 3.40 -170.31 -0.58 -15.98 16 19 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -27.38 10.31 55.49 0.57 -26.80 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.15 3.15 6.41 -2.88 -0.02 3.13 16 28 C 0.10 1.40 5.30 -3.90 -0.02 1.38 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.41 3.69 7.44 -40.82 -0.30 3.39 16 35 H 0.10 0.93 7.67 -51.93 -0.40 0.54 16 36 H 0.10 0.86 8.01 -51.93 -0.42 0.44 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.70 6.05 -51.93 -0.31 0.38 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.10 6.08 -51.93 -0.32 0.78 16 43 H 0.06 1.21 7.82 -51.93 -0.41 0.80 16 44 H 0.04 1.15 7.52 -51.93 -0.39 0.76 16 45 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 49 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 50 H 0.10 1.58 6.86 -51.93 -0.36 1.23 16 LS Contribution 392.71 15.07 5.92 5.92 Total: -1.00 -34.59 392.71 -8.66 -43.25 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.21 Total: 1.52 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -0.31 Total: 11.34 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.86 Total: -57.92 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.18 Total: -21.37 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.59 -8.66 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131645965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.470 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds