Wall clock time and date at job start Tue Mar 31 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47524 * 2 1 4 4 O 1.21283 * 120.00022 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00354 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00493 * 179.97438 * 5 3 2 7 7 C 1.50690 * 109.47228 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00444 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00008 * 180.02562 * 7 6 5 10 10 C 1.47166 * 121.08102 * 0.02562 * 9 7 6 11 11 C 1.53277 * 108.55728 * 128.72836 * 10 9 7 12 12 H 1.09007 * 109.51346 * 293.05361 * 11 10 9 13 13 C 1.53002 * 109.51007 * 172.95572 * 11 10 9 14 14 O 1.43121 * 109.22410 * 53.03074 * 11 10 9 15 15 C 1.41886 * 114.38872 * 299.11345 * 14 11 10 16 16 C 1.54368 * 110.72548 * 296.61819 * 15 14 11 17 17 C 1.54469 * 102.95715 * 276.11742 * 16 15 14 18 18 N 1.47090 * 107.28755 * 338.86013 * 17 16 15 19 19 C 1.36931 * 125.62809 * 178.89094 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69490 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69375 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47571 * 108.73734 * 358.62753 * 18 17 16 28 28 C 1.47329 * 121.07957 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.47702 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46941 * 300.00777 * 1 2 3 31 31 H 1.09010 * 109.46538 * 60.00107 * 1 2 3 32 32 H 1.08996 * 109.46941 * 239.99223 * 2 1 3 33 33 H 1.09010 * 109.46538 * 119.99893 * 2 1 3 34 34 H 0.97006 * 119.99424 * 359.97438 * 5 3 2 35 35 H 1.09002 * 109.47054 * 59.99630 * 6 5 3 36 36 H 1.08998 * 109.46761 * 299.99733 * 6 5 3 37 37 H 1.08995 * 109.62774 * 248.45120 * 10 9 7 38 38 H 1.09000 * 109.61978 * 9.00825 * 10 9 7 39 39 H 1.08999 * 109.47492 * 60.00141 * 13 11 10 40 40 H 1.09006 * 109.46625 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.46956 * 299.99411 * 13 11 10 42 42 H 1.08997 * 110.73483 * 34.67323 * 16 15 14 43 43 H 1.08998 * 110.72959 * 157.79652 * 16 15 14 44 44 H 1.08998 * 109.99524 * 219.37738 * 17 16 15 45 45 H 1.09000 * 109.77048 * 98.21837 * 17 16 15 46 46 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 47 47 H 1.09005 * 110.37948 * 142.39032 * 27 18 17 48 48 H 1.09005 * 110.37765 * 264.62019 * 27 18 17 49 49 H 1.09007 * 109.67501 * 109.44199 * 28 9 7 50 50 H 1.09000 * 109.70360 * 348.92940 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8460 3.0481 -0.0011 7 6 5.3529 3.0480 -0.0010 8 8 5.9593 1.9977 -0.0009 9 7 6.0268 4.2152 -0.0009 10 6 5.3153 5.5034 -0.0004 11 6 5.8755 6.3697 1.1332 12 1 5.6178 5.9236 2.0938 13 6 5.2774 7.7752 1.0456 14 8 7.2991 6.4472 1.0076 15 6 7.9638 5.1966 1.0929 16 6 7.7556 4.5611 2.4843 17 6 8.8522 5.2334 3.3396 18 7 9.8800 5.7368 2.4157 19 6 11.0123 6.4173 2.7762 20 1 11.7111 6.7421 2.0194 21 6 11.2620 6.6898 4.1142 22 7 10.4101 6.2945 5.0363 23 14 12.8027 7.6249 4.6052 24 1 12.8317 7.7913 6.0805 25 1 14.0024 6.8661 4.1689 26 1 12.7990 8.9607 3.9564 27 6 9.4926 5.3818 1.0367 28 6 7.4999 4.2428 -0.0013 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.9878 0.9296 -0.0005 35 1 3.4829 3.5623 0.8889 36 1 3.4824 3.5617 -0.8911 37 1 5.4680 6.0064 -0.9552 38 1 4.2507 5.3334 0.1607 39 1 4.1929 7.7150 1.1369 40 1 5.6760 8.3905 1.8523 41 1 5.5371 8.2214 0.0856 42 1 6.7637 4.7949 2.8708 43 1 7.9075 3.4826 2.4425 44 1 9.2915 4.5055 4.0217 45 1 8.4236 6.0616 3.9040 46 1 10.5844 6.4853 5.9713 47 1 9.7523 6.1876 0.3501 48 1 9.9781 4.4543 0.7329 49 1 7.8601 4.5915 -0.9693 50 1 7.8863 3.2428 0.1954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131645965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:51 Heat of formation + Delta-G solvation = -106.039652 kcal Electronic energy + Delta-G solvation = -30966.308926 eV Core-core repulsion = 26800.634010 eV Total energy + Delta-G solvation = -4165.674915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98258 -40.87259 -39.91644 -37.98743 -35.93425 -35.60841 -34.76353 -33.69252 -32.94411 -31.22974 -30.48869 -29.13725 -27.64728 -26.98011 -25.56073 -24.47119 -23.16416 -22.05819 -21.43651 -21.11407 -20.18955 -18.96735 -18.73340 -18.12240 -17.67028 -17.26632 -17.12362 -16.77461 -16.50929 -16.26821 -15.96123 -15.64836 -15.47435 -15.14553 -14.97143 -14.76368 -14.30408 -14.18040 -14.05466 -13.75541 -13.58933 -13.46154 -13.16844 -13.12588 -13.02206 -12.96592 -12.81316 -12.73866 -12.61464 -12.27271 -12.08735 -12.03831 -12.00647 -11.86610 -11.75842 -11.56611 -11.04819 -10.98511 -10.91291 -10.70541 -10.26246 -9.61464 -8.92122 -7.85282 -5.20983 1.33157 1.44866 1.49016 1.52816 1.55113 1.60933 2.26998 2.48759 2.60608 3.19257 3.33198 3.45631 3.56363 3.79524 3.80976 3.87015 3.91257 4.03035 4.16395 4.19982 4.22614 4.29814 4.30915 4.36392 4.41380 4.46991 4.60336 4.70505 4.73925 4.75692 4.77479 4.84178 4.94265 5.02337 5.02981 5.08868 5.09734 5.12885 5.24040 5.32624 5.39998 5.42234 5.57123 5.69709 6.14555 6.16789 6.38598 6.44871 6.84783 7.07989 7.16712 7.74840 8.39447 9.25406 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002459 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.361558 B =11383.357352 C =11756.371955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.511 3.489 4 O -0.581 6.581 5 N -0.719 5.719 6 C 0.104 3.896 7 C 0.515 3.485 8 O -0.567 6.567 9 N -0.605 5.605 10 C 0.080 3.920 11 C 0.059 3.941 12 H 0.053 0.947 13 C -0.137 4.137 14 O -0.370 6.370 15 C 0.109 3.891 16 C -0.150 4.150 17 C 0.198 3.802 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.296 1.296 25 H -0.275 1.275 26 H -0.277 1.277 27 C 0.145 3.855 28 C 0.108 3.892 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.416 0.584 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.004 0.996 45 H 0.007 0.993 46 H 0.246 0.754 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.094 0.906 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.149 -8.702 -14.091 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.299 3.701 4 O -0.461 6.461 5 N -0.374 5.374 6 C -0.023 4.023 7 C 0.304 3.696 8 O -0.446 6.446 9 N -0.338 5.338 10 C -0.042 4.042 11 C 0.001 3.999 12 H 0.071 0.929 13 C -0.194 4.194 14 O -0.289 6.289 15 C 0.067 3.933 16 C -0.188 4.188 17 C 0.073 3.927 18 N -0.347 5.347 19 C -0.368 4.368 20 H 0.103 0.897 21 C -0.263 4.263 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.222 1.222 25 H -0.201 1.201 26 H -0.203 1.203 27 C 0.020 3.980 28 C -0.015 4.015 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.255 0.745 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.022 0.978 45 H 0.025 0.975 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.112 0.888 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.184 -8.347 -13.950 25.145 hybrid contribution 1.383 0.198 1.059 1.753 sum -17.801 -8.149 -12.891 23.441 Atomic orbital electron populations 1.21541 0.93174 1.02684 1.02055 1.21701 0.98310 0.91281 1.06600 1.21448 0.81059 0.93233 0.74322 1.90692 1.56092 1.47944 1.51337 1.45865 1.07881 1.08230 1.75411 1.21113 0.89082 0.86317 1.05798 1.20789 0.90478 0.83017 0.75360 1.90688 1.70536 1.31676 1.51693 1.48141 1.06677 1.06536 1.72412 1.22767 0.98230 0.82591 1.00661 1.22751 0.80984 0.98619 0.97531 0.92911 1.21717 1.01627 0.92857 1.03202 1.87898 1.19337 1.28467 1.93189 1.22096 0.93343 0.84448 0.93396 1.23172 0.99218 0.99675 0.96744 1.20749 0.87169 0.94296 0.90492 1.44700 1.22903 1.65476 1.01662 1.19438 0.97463 1.27669 0.92230 0.89681 1.25698 1.02068 1.02640 0.95844 1.70201 1.37890 1.52456 0.99788 0.85104 0.78979 0.78613 0.76350 1.22187 1.20076 1.20251 1.21545 0.90246 0.98823 0.87417 1.21938 0.79776 1.00673 0.99137 0.89775 0.93430 0.93169 0.86492 0.86844 0.74516 0.87618 0.86682 0.88042 0.85795 0.87777 0.93346 0.90786 0.90916 0.91133 0.97814 0.97506 0.94517 0.92881 0.93200 0.88812 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 71.98 0.66 -0.93 16 2 C -0.14 -1.44 6.42 29.85 0.19 -1.25 16 3 C 0.51 9.05 7.83 87.65 0.69 9.74 16 4 O -0.58 -14.52 15.98 -3.04 -0.05 -14.57 16 5 N -0.72 -12.00 5.53 -466.81 -2.58 -14.58 16 6 C 0.10 1.74 4.53 85.63 0.39 2.13 16 7 C 0.51 11.31 7.78 87.65 0.68 11.99 16 8 O -0.57 -15.89 15.16 -3.04 -0.05 -15.94 16 9 N -0.61 -13.25 2.95 -818.63 -2.41 -15.66 16 10 C 0.08 1.34 5.81 86.34 0.50 1.84 16 11 C 0.06 1.42 3.19 30.69 0.10 1.52 16 12 H 0.05 1.40 6.24 -2.38 -0.01 1.39 16 13 C -0.14 -2.62 9.57 71.98 0.69 -1.93 16 14 O -0.37 -12.59 9.93 -148.95 -1.48 -14.07 16 15 C 0.11 3.72 0.84 -10.16 -0.01 3.71 16 16 C -0.15 -5.80 5.87 31.56 0.19 -5.61 16 17 C 0.20 10.27 5.39 86.77 0.47 10.74 16 18 N -0.62 -32.89 3.40 -692.73 -2.36 -35.25 16 19 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16 20 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 22 N -0.95 -59.18 10.31 21.65 0.22 -58.95 16 23 Si 0.98 46.75 29.55 68.60 2.03 48.77 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 27 C 0.15 5.97 6.41 86.55 0.56 6.53 16 28 C 0.11 2.89 5.30 86.02 0.46 3.34 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.10 -2.38 -0.02 0.68 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.42 6.53 7.44 -92.70 -0.69 5.84 16 35 H 0.11 1.67 7.67 -2.39 -0.02 1.66 16 36 H 0.12 1.59 8.01 -2.39 -0.02 1.57 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.12 1.33 6.05 -2.39 -0.01 1.32 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 2.63 6.08 -2.39 -0.01 2.62 16 43 H 0.07 2.64 7.82 -2.39 -0.02 2.62 16 44 H 0.00 0.21 7.52 -2.39 -0.02 0.20 16 45 H 0.01 0.40 7.37 -2.39 -0.02 0.38 16 46 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 47 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 48 H 0.05 1.93 8.00 -2.38 -0.02 1.91 16 49 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 50 H 0.09 2.75 6.86 -2.39 -0.02 2.73 16 Total: -1.00 -78.94 392.71 0.46 -78.48 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.25 Total: 16.43 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 6.88 Total: 25.34 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -7.13 Total: -124.44 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.57 Total: -44.57 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -78.94 0.46 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131645965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.561 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds