Wall clock time and date at job start Tue Mar 31 2020 23:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.51050 * 2 1 4 4 C 1.53277 * 109.51007 * 120.09971 * 2 1 3 5 5 N 1.47166 * 108.55728 * 172.95572 * 4 2 1 6 6 C 1.34772 * 121.08162 * 128.77428 * 5 4 2 7 7 O 1.21290 * 119.99975 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00061 * 359.96883 * 6 5 4 9 9 C 1.50709 * 109.47321 * 180.02562 * 8 6 5 10 10 O 1.21280 * 119.99565 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00049 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99638 * 179.97438 * 11 9 8 13 13 C 1.46496 * 119.99984 * 359.97438 * 11 9 8 14 14 C 1.47329 * 117.83941 * 308.74404 * 5 4 2 15 15 C 1.52365 * 108.42820 * 49.16136 * 14 5 4 16 16 C 1.54368 * 110.38914 * 73.49012 * 15 14 5 17 17 C 1.54469 * 102.95715 * 152.19753 * 16 15 14 18 18 N 1.47090 * 107.28755 * 338.86013 * 17 16 15 19 19 C 1.36931 * 125.62809 * 178.89094 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69490 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69375 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47571 * 108.73734 * 358.62753 * 18 17 16 28 28 O 1.41886 * 111.46471 * 309.99772 * 15 14 5 29 29 H 1.08999 * 109.47492 * 299.90170 * 1 2 3 30 30 H 1.09006 * 109.46625 * 59.89982 * 1 2 3 31 31 H 1.08999 * 109.46956 * 179.89440 * 1 2 3 32 32 H 1.08995 * 109.62189 * 53.22923 * 4 2 1 33 33 H 1.09000 * 109.62352 * 292.67349 * 4 2 1 34 34 H 1.09005 * 109.47318 * 300.00550 * 8 6 5 35 35 H 1.08998 * 109.47143 * 60.00347 * 8 6 5 36 36 H 1.08996 * 109.47182 * 60.00751 * 12 11 9 37 37 H 1.09000 * 109.46667 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47405 * 299.99704 * 12 11 9 39 39 H 1.09005 * 109.46904 * 90.00104 * 13 11 9 40 40 H 1.09000 * 109.47101 * 209.99933 * 13 11 9 41 41 H 1.08994 * 109.47223 * 330.00017 * 13 11 9 42 42 H 1.09007 * 109.67501 * 289.42631 * 14 5 4 43 43 H 1.09000 * 109.70360 * 168.91373 * 14 5 4 44 44 H 1.08997 * 110.73483 * 270.75334 * 16 15 14 45 45 H 1.08998 * 110.72959 * 33.87663 * 16 15 14 46 46 H 1.08998 * 109.99524 * 219.37738 * 17 16 15 47 47 H 1.09000 * 109.77048 * 98.21837 * 17 16 15 48 48 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.37948 * 142.39032 * 27 18 17 50 50 H 1.09005 * 110.37765 * 264.62019 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0419 -0.7246 1.2499 5 7 3.5035 -0.8621 1.1460 6 6 4.3121 -0.4737 2.1518 7 8 5.5141 -0.5965 2.0454 8 6 3.7230 0.1131 3.4086 9 6 4.8317 0.4627 4.3676 10 8 5.9867 0.2560 4.0604 11 7 4.5399 1.0049 5.5664 12 6 5.6177 1.3441 6.4988 13 6 3.1448 1.2550 5.9371 14 6 4.0539 -1.4387 -0.0930 15 6 3.4217 -0.7224 -1.2799 16 6 4.0037 0.7003 -1.4217 17 6 3.8637 0.9826 -2.9340 18 7 3.7502 -0.3174 -3.6126 19 6 3.5883 -0.5025 -4.9597 20 1 3.5199 -1.5020 -5.3631 21 6 3.5122 0.5944 -5.8069 22 7 3.5951 1.8126 -5.3153 23 14 3.2835 0.3420 -7.6436 24 1 3.2265 1.6620 -8.3213 25 1 4.4247 -0.4416 -8.1813 26 1 2.0178 -0.3951 -7.8882 27 6 3.8460 -1.3893 -2.6029 28 8 2.0081 -0.6776 -1.1665 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8892 31 1 -0.3633 -1.0277 -0.0019 32 1 1.5849 -1.7120 1.3136 33 1 1.7911 -0.1443 2.1379 34 1 3.1605 1.0133 3.1603 35 1 3.0573 -0.6149 3.8721 36 1 6.2832 2.0725 6.0354 37 1 5.1915 1.7678 7.4081 38 1 6.1803 0.4441 6.7468 39 1 2.7394 0.3768 6.4398 40 1 3.0953 2.1128 6.6078 41 1 2.5618 1.4614 5.0396 42 1 3.8192 -2.5022 -0.1387 43 1 5.1349 -1.3003 -0.1142 44 1 3.4233 1.4146 -0.8380 45 1 5.0515 0.7201 -1.1220 46 1 4.7432 1.5145 -3.2968 47 1 2.9677 1.5757 -3.1169 48 1 3.5415 2.5792 -5.9073 49 1 3.1679 -2.2060 -2.8508 50 1 4.8704 -1.7554 -2.5339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:13 Heat of formation + Delta-G solvation = -87.047264 kcal Electronic energy + Delta-G solvation = -31462.776938 eV Core-core repulsion = 27297.925595 eV Total energy + Delta-G solvation = -4164.851344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.93927 -40.94132 -39.50267 -37.92627 -36.50374 -35.69954 -34.79089 -32.97253 -32.22948 -31.04476 -29.95960 -28.63644 -27.64199 -27.15124 -26.54194 -25.24161 -23.09926 -22.04530 -21.49934 -20.48502 -19.67209 -18.96207 -18.73070 -17.93138 -17.32098 -17.17628 -17.09535 -16.77426 -16.43674 -16.22355 -15.84979 -15.59517 -15.35875 -15.09984 -14.58155 -14.44598 -14.22966 -14.04620 -13.91161 -13.72806 -13.57375 -13.47616 -13.44483 -13.06751 -13.00445 -12.98218 -12.86473 -12.79177 -12.73600 -12.71263 -12.22927 -12.07574 -12.03283 -11.85533 -11.71948 -11.48945 -11.00163 -10.84327 -10.70454 -10.51221 -9.63580 -9.48762 -8.92388 -7.84933 -5.20989 1.44730 1.49338 1.55115 1.56228 1.63892 1.69934 2.24045 2.49169 2.65363 3.31074 3.33594 3.45132 3.60160 3.63389 3.86038 3.92938 3.95172 4.09599 4.19581 4.24578 4.29238 4.38443 4.41379 4.46891 4.47581 4.52759 4.54903 4.65456 4.75903 4.76723 4.80328 4.85223 4.87493 4.92459 4.95811 5.04082 5.08500 5.16297 5.30864 5.40599 5.42474 5.56586 5.56833 5.68974 6.16273 6.29647 6.40597 6.43902 7.07857 7.12117 7.29685 7.74405 8.39795 9.25881 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002721 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.878234 B =10289.211696 C =10774.985401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 H 0.053 0.947 4 C 0.081 3.919 5 N -0.613 5.613 6 C 0.507 3.493 7 O -0.555 6.555 8 C -0.150 4.150 9 C 0.499 3.501 10 O -0.560 6.560 11 N -0.624 5.624 12 C 0.087 3.913 13 C 0.065 3.935 14 C 0.108 3.892 15 C 0.114 3.886 16 C -0.149 4.149 17 C 0.199 3.801 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.294 1.294 25 H -0.277 1.277 26 H -0.275 1.275 27 C 0.144 3.856 28 O -0.370 6.370 29 H 0.112 0.888 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.001 0.999 47 H 0.011 0.989 48 H 0.246 0.754 49 H 0.055 0.945 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 -2.120 28.385 30.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.003 4.003 3 H 0.071 0.929 4 C -0.040 4.040 5 N -0.347 5.347 6 C 0.295 3.705 7 O -0.431 6.431 8 C -0.191 4.191 9 C 0.286 3.714 10 O -0.437 6.437 11 N -0.359 5.359 12 C -0.055 4.055 13 C -0.076 4.076 14 C -0.016 4.016 15 C 0.072 3.928 16 C -0.187 4.187 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.811 3.189 24 H -0.220 1.220 25 H -0.203 1.203 26 H -0.200 1.200 27 C 0.019 3.981 28 O -0.290 6.290 29 H 0.131 0.869 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.061 0.939 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.019 0.981 47 H 0.030 0.970 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.275 -2.250 27.893 29.480 hybrid contribution 0.629 0.431 -1.426 1.617 sum -8.645 -1.819 26.467 27.903 Atomic orbital electron populations 1.21722 0.90169 1.03728 1.03567 1.22858 0.97056 0.95445 0.84988 0.92887 1.22796 0.77756 1.03636 0.99857 1.48268 1.08119 1.62700 1.15657 1.20801 0.86380 0.78014 0.85261 1.90854 1.16620 1.54855 1.80775 1.21735 0.98782 1.06551 0.92070 1.20646 0.89998 0.77825 0.82935 1.90860 1.23479 1.53279 1.76094 1.47945 1.09821 1.62323 1.15774 1.21674 0.90408 1.00139 0.93310 1.22250 0.78922 1.03219 1.03235 1.21789 0.99229 0.97865 0.82679 1.21987 0.81972 0.94427 0.94415 1.23151 1.00317 0.97942 0.97335 1.20748 0.97084 0.87175 0.87606 1.44700 1.85717 1.01625 1.02639 1.19448 1.42124 0.93306 0.82122 0.89734 1.25709 1.02594 0.95028 1.02838 1.70207 1.58067 0.97538 1.34508 0.85084 0.78341 0.76295 0.79194 1.22048 1.20261 1.20048 1.21530 0.98074 0.91789 0.86754 1.87882 1.19156 1.77245 1.44704 0.86936 0.93742 0.91020 0.88426 0.84321 0.82365 0.81587 0.93947 0.86933 0.93658 0.90588 0.89093 0.88837 0.89326 0.90237 0.90484 0.92144 0.98109 0.97044 0.94476 0.92721 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.57 71.98 0.69 -1.54 16 2 C 0.05 1.23 3.19 30.69 0.10 1.33 16 3 H 0.05 1.32 6.24 -2.38 -0.01 1.31 16 4 C 0.08 1.20 5.81 86.34 0.50 1.70 16 5 N -0.61 -14.69 2.95 -818.67 -2.41 -17.10 16 6 C 0.51 13.51 7.71 87.66 0.68 14.18 16 7 O -0.55 -21.98 13.67 20.38 0.28 -21.70 16 8 C -0.15 -2.11 3.11 29.10 0.09 -2.02 16 9 C 0.50 11.16 7.67 87.66 0.67 11.83 16 10 O -0.56 -20.36 14.18 20.41 0.29 -20.07 16 11 N -0.62 -8.54 3.27 -871.91 -2.85 -11.40 16 12 C 0.09 1.17 10.16 127.77 1.30 2.47 16 13 C 0.06 0.15 10.21 127.77 1.30 1.45 16 14 C 0.11 3.33 5.30 86.01 0.46 3.78 16 15 C 0.11 4.16 0.84 -10.16 -0.01 4.15 16 16 C -0.15 -6.17 5.87 31.56 0.19 -5.98 16 17 C 0.20 10.69 5.39 86.77 0.47 11.16 16 18 N -0.62 -34.04 3.40 -692.73 -2.36 -36.40 16 19 C -0.24 -14.18 10.28 84.03 0.86 -13.32 16 20 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 22 N -0.95 -60.02 10.31 21.65 0.22 -59.80 16 23 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 24 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 27 C 0.14 6.31 6.41 86.55 0.56 6.86 16 28 O -0.37 -12.81 9.93 -148.95 -1.48 -14.29 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.14 0.63 6.05 -2.39 -0.01 0.61 16 34 H 0.16 1.03 6.93 -2.38 -0.02 1.01 16 35 H 0.17 0.79 7.97 -2.39 -0.02 0.77 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.58 7.79 -2.39 -0.02 0.56 16 38 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.09 -0.05 7.92 -2.39 -0.02 -0.07 16 41 H 0.09 -0.15 6.44 -2.39 -0.02 -0.16 16 42 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.08 2.84 6.86 -2.39 -0.02 2.82 16 44 H 0.08 2.90 6.08 -2.39 -0.01 2.88 16 45 H 0.06 2.55 7.82 -2.39 -0.02 2.53 16 46 H 0.00 0.04 7.52 -2.39 -0.02 0.02 16 47 H 0.01 0.68 7.37 -2.39 -0.02 0.66 16 48 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 49 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 50 H 0.04 1.81 8.00 -2.38 -0.02 1.79 16 Total: -1.00 -95.63 388.01 2.96 -92.67 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.93 Total: 6.20 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 8.31 Total: 32.41 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -7.40 Total: -124.69 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -0.91 Total: -56.05 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -95.63 2.96 -92.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.620 kcal (2) G-P(sol) polarization free energy of solvation -95.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds