Wall clock time and date at job start Tue Mar 31 2020 23:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.51294 * 2 1 4 4 C 1.53278 * 109.51392 * 120.10016 * 2 1 3 5 5 N 1.47165 * 108.56993 * 172.90527 * 4 2 1 6 6 C 1.34771 * 121.07577 * 128.79946 * 5 4 2 7 7 O 1.21282 * 119.99880 * 179.97438 * 6 5 4 8 8 C 1.50704 * 120.00154 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.47114 * 180.02562 * 8 6 5 10 10 O 1.21281 * 120.00077 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99677 * 179.97438 * 9 8 6 12 12 C 1.46503 * 119.99539 * 179.97438 * 11 9 8 13 13 C 1.46497 * 120.00186 * 359.97438 * 11 9 8 14 14 C 1.47333 * 117.84665 * 308.77384 * 5 4 2 15 15 C 1.52372 * 108.42772 * 49.17273 * 14 5 4 16 16 C 1.54352 * 110.42153 * 186.37770 * 15 14 5 17 17 C 1.54462 * 102.87119 * 207.62267 * 16 15 14 18 18 N 1.47080 * 107.30065 * 21.48615 * 17 16 15 19 19 C 1.36939 * 125.63054 * 181.00867 * 18 17 16 20 20 H 1.07999 * 119.99998 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00007 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47376 * 59.99784 * 23 21 19 25 25 H 1.48491 * 109.47526 * 179.97438 * 23 21 19 26 26 H 1.48511 * 109.47001 * 300.00318 * 23 21 19 27 27 C 1.47567 * 108.73833 * 1.00072 * 18 17 16 28 28 O 1.41896 * 111.43613 * 309.96682 * 15 14 5 29 29 H 1.08998 * 109.46936 * 299.90172 * 1 2 3 30 30 H 1.08994 * 109.47112 * 59.89980 * 1 2 3 31 31 H 1.08999 * 109.47261 * 179.90278 * 1 2 3 32 32 H 1.09003 * 109.62345 * 53.17817 * 4 2 1 33 33 H 1.09001 * 109.77311 * 292.72126 * 4 2 1 34 34 H 1.09000 * 109.46750 * 299.99887 * 8 6 5 35 35 H 1.08993 * 109.47649 * 59.99897 * 8 6 5 36 36 H 1.09003 * 109.47148 * 359.97438 * 12 11 9 37 37 H 1.08997 * 109.47227 * 120.00341 * 12 11 9 38 38 H 1.09009 * 109.46639 * 239.99972 * 12 11 9 39 39 H 1.09004 * 109.47143 * 89.99603 * 13 11 9 40 40 H 1.08999 * 109.47073 * 209.99632 * 13 11 9 41 41 H 1.08994 * 109.47103 * 330.00152 * 13 11 9 42 42 H 1.09002 * 109.67840 * 168.91735 * 14 5 4 43 43 H 1.08999 * 109.67902 * 289.42943 * 14 5 4 44 44 H 1.09003 * 110.73465 * 325.96495 * 16 15 14 45 45 H 1.08998 * 110.73842 * 89.27688 * 16 15 14 46 46 H 1.08998 * 109.87722 * 262.05148 * 17 16 15 47 47 H 1.09002 * 110.00039 * 140.97877 * 17 16 15 48 48 H 0.97001 * 119.99728 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.37622 * 217.86003 * 27 18 17 50 50 H 1.09001 * 110.38000 * 95.51372 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7246 1.2499 5 7 3.5034 -0.8632 1.1456 6 6 4.3125 -0.4756 2.1513 7 8 5.5143 -0.5993 2.0447 8 6 3.7240 0.1114 3.4084 9 6 4.8332 0.4600 4.3671 10 8 5.9879 0.2517 4.0602 11 7 4.5419 1.0031 5.5658 12 6 5.6202 1.3414 6.4980 13 6 3.1472 1.2552 5.9363 14 6 4.0533 -1.4401 -0.0936 15 6 3.4217 -0.7228 -1.2804 16 6 3.8438 -1.3963 -2.6035 17 6 3.7657 -0.2362 -3.6203 18 7 3.8532 1.0193 -2.8590 19 6 3.8016 2.2800 -3.3910 20 1 3.8745 3.1422 -2.7448 21 6 3.6555 2.4499 -4.7610 22 7 3.5661 1.3991 -5.5485 23 14 3.5858 4.1696 -5.4868 24 1 4.8429 4.8930 -5.1676 25 1 3.4281 4.0790 -6.9605 26 1 2.4317 4.9044 -4.9090 27 6 4.0055 0.6959 -1.4273 28 8 2.0080 -0.6777 -1.1665 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8890 31 1 -0.3634 -1.0276 -0.0017 32 1 1.5843 -1.7117 1.3141 33 1 1.7918 -0.1467 2.1396 34 1 3.1623 1.0120 3.1603 35 1 3.0578 -0.6161 3.8719 36 1 6.5807 1.0837 6.0517 37 1 5.5936 2.4098 6.7121 38 1 5.4885 0.7819 7.4243 39 1 2.7406 0.3778 6.4393 40 1 3.0988 2.1134 6.6066 41 1 2.5645 1.4619 5.0387 42 1 5.1343 -1.3024 -0.1144 43 1 3.8177 -2.5033 -0.1396 44 1 4.8615 -1.7802 -2.5336 45 1 3.1478 -2.1914 -2.8711 46 1 2.8188 -0.2782 -4.1585 47 1 4.5952 -0.3011 -4.3245 48 1 3.4644 1.5178 -6.5059 49 1 3.4436 1.4026 -0.8167 50 1 5.0587 0.7039 -1.1463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131692372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:17 Heat of formation + Delta-G solvation = -58.986952 kcal Electronic energy + Delta-G solvation = -31636.782381 eV Core-core repulsion = 27473.147823 eV Total energy + Delta-G solvation = -4163.634557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81791 -39.88208 -38.32472 -36.32535 -35.67662 -34.49119 -33.18066 -31.44972 -31.26320 -29.35962 -28.48727 -27.85645 -26.47668 -26.20957 -25.30889 -23.62646 -21.86010 -20.51861 -20.06768 -19.27381 -18.66624 -17.87921 -16.95442 -16.75701 -16.49165 -16.20391 -16.09593 -15.49968 -15.26207 -14.65904 -14.56392 -14.11438 -14.08561 -13.54431 -13.47472 -13.38847 -13.32146 -13.01014 -12.89919 -12.82737 -12.47233 -12.32441 -12.27353 -12.15184 -12.06623 -11.90942 -11.69925 -11.49933 -11.01771 -10.83869 -10.82221 -10.42262 -10.19795 -10.17253 -10.08609 -9.89485 -9.64084 -9.48667 -9.39935 -8.97305 -8.53339 -8.29965 -6.75905 -5.65428 -2.98037 2.42001 2.49843 2.70157 3.04929 3.43618 3.47656 3.49102 3.88465 4.14261 4.32897 4.53374 4.62846 4.69654 4.81862 4.84500 4.91115 4.95959 5.07397 5.09264 5.16308 5.21920 5.23260 5.25134 5.38751 5.49654 5.53765 5.57244 5.61866 5.63356 5.75159 5.89692 5.95688 6.06946 6.13137 6.19892 6.23105 6.35968 6.46363 6.52947 6.66478 6.70430 7.00386 7.36834 7.58931 7.67423 7.74104 7.88799 7.98141 8.25963 8.31629 9.27508 9.87389 10.53872 11.46373 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003130 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.849927 B = 8944.804229 C = 9468.172333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.068 0.932 4 C 0.079 3.921 5 N -0.616 5.616 6 C 0.515 3.485 7 O -0.493 6.493 8 C -0.162 4.162 9 C 0.513 3.487 10 O -0.489 6.489 11 N -0.630 5.630 12 C 0.082 3.918 13 C 0.077 3.923 14 C 0.101 3.899 15 C 0.092 3.908 16 C -0.129 4.129 17 C 0.183 3.817 18 N -0.599 5.599 19 C -0.226 4.226 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.121 3.879 28 O -0.346 6.346 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.252 0.748 49 H 0.037 0.963 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 -4.734 23.536 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.045 4.045 5 N -0.352 5.352 6 C 0.301 3.699 7 O -0.365 6.365 8 C -0.205 4.205 9 C 0.298 3.702 10 O -0.360 6.360 11 N -0.367 5.367 12 C -0.061 4.061 13 C -0.066 4.066 14 C -0.022 4.022 15 C 0.051 3.949 16 C -0.168 4.168 17 C 0.058 3.942 18 N -0.325 5.325 19 C -0.355 4.355 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C -0.005 4.005 28 O -0.265 6.265 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.091 -4.901 22.947 24.243 hybrid contribution -0.255 1.139 -0.082 1.170 sum -6.346 -3.762 22.865 24.026 Atomic orbital electron populations 1.21683 0.92523 1.02798 1.02785 1.22433 0.95216 0.96291 0.85001 0.91419 1.22522 0.80391 1.01870 0.99706 1.48192 1.06540 1.63462 1.16959 1.19870 0.87008 0.79038 0.83997 1.90858 1.13707 1.52471 1.79500 1.21651 0.99367 1.04218 0.95273 1.20067 0.90278 0.78038 0.81776 1.90867 1.20620 1.50227 1.74295 1.47740 1.07713 1.64203 1.17058 1.21650 0.91916 1.00049 0.92464 1.21803 0.81634 1.01569 1.01605 1.22156 1.00771 0.97031 0.82250 1.22341 0.81203 0.97059 0.94339 1.22837 1.00170 0.99962 0.93845 1.21153 1.01190 0.81292 0.90543 1.44407 1.86028 1.02499 0.99575 1.18969 1.43167 0.82543 0.90772 0.90782 1.24772 1.02263 0.97335 0.95981 1.69951 1.56442 1.27049 1.03433 0.86208 0.77833 0.83688 0.78076 1.21230 1.21585 1.21263 1.21926 0.97146 0.92947 0.88501 1.87846 1.20158 1.76498 1.41981 0.91347 0.91024 0.91867 0.90526 0.89518 0.86124 0.86268 0.89425 0.92302 0.92408 0.92467 0.90864 0.90897 0.87989 0.91036 0.90846 0.90873 0.93208 0.93818 0.93745 0.94457 0.95675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.57 37.16 0.36 -1.13 16 2 C 0.07 0.94 3.20 -26.59 -0.08 0.85 16 3 H 0.07 1.04 6.25 -51.93 -0.32 0.71 16 4 C 0.08 0.81 5.81 -3.54 -0.02 0.79 16 5 N -0.62 -8.46 2.95 -172.69 -0.51 -8.97 16 6 C 0.52 7.61 7.71 -10.99 -0.08 7.53 16 7 O -0.49 -9.77 13.67 -18.96 -0.26 -10.03 16 8 C -0.16 -1.58 3.11 -29.03 -0.09 -1.67 16 9 C 0.51 6.40 7.67 -10.98 -0.08 6.32 16 10 O -0.49 -8.74 13.51 -18.96 -0.26 -9.00 16 11 N -0.63 -5.53 3.27 -189.51 -0.62 -6.15 16 12 C 0.08 0.64 10.69 59.85 0.64 1.28 16 13 C 0.08 0.34 10.29 59.85 0.62 0.95 16 14 C 0.10 1.59 5.30 -3.91 -0.02 1.57 16 15 C 0.09 1.69 0.83 -89.65 -0.07 1.62 16 16 C -0.13 -2.50 6.12 -25.26 -0.15 -2.66 16 17 C 0.18 4.59 5.39 -2.96 -0.02 4.57 16 18 N -0.60 -15.91 3.40 -170.32 -0.58 -16.48 16 19 C -0.23 -6.52 10.28 -15.06 -0.15 -6.67 16 20 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.61 10.31 55.49 0.57 -27.04 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 2.68 6.18 -2.87 -0.02 2.67 16 28 O -0.35 -6.18 9.92 -35.22 -0.35 -6.53 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.58 6.05 -51.93 -0.31 0.26 16 34 H 0.12 0.86 6.93 -51.93 -0.36 0.50 16 35 H 0.12 0.74 7.97 -51.93 -0.41 0.32 16 36 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 41 H 0.07 0.23 6.44 -51.93 -0.33 -0.11 16 42 H 0.10 1.79 6.86 -51.93 -0.36 1.43 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.05 1.39 7.38 -51.93 -0.38 1.00 16 47 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.04 0.82 6.09 -51.93 -0.32 0.50 16 50 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -38.80 387.21 -8.62 -47.42 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.14 Total: -2.34 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 0.71 Total: 15.70 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -1.14 Total: -58.64 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.86 Total: -25.56 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.80 -8.62 -47.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.571 kcal (2) G-P(sol) polarization free energy of solvation -38.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds