Wall clock time and date at job start Tue Mar 31 2020 23:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.51294 * 2 1 4 4 C 1.53278 * 109.51392 * 120.10016 * 2 1 3 5 5 N 1.47165 * 108.56993 * 172.90527 * 4 2 1 6 6 C 1.34771 * 121.07577 * 128.79946 * 5 4 2 7 7 O 1.21282 * 119.99880 * 179.97438 * 6 5 4 8 8 C 1.50704 * 120.00154 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.47114 * 180.02562 * 8 6 5 10 10 O 1.21281 * 120.00077 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99677 * 179.97438 * 9 8 6 12 12 C 1.46503 * 119.99539 * 179.97438 * 11 9 8 13 13 C 1.46497 * 120.00186 * 359.97438 * 11 9 8 14 14 C 1.47333 * 117.84665 * 308.77384 * 5 4 2 15 15 C 1.52372 * 108.42772 * 49.17273 * 14 5 4 16 16 C 1.54352 * 110.42153 * 186.37770 * 15 14 5 17 17 C 1.54462 * 102.87119 * 207.62267 * 16 15 14 18 18 N 1.47080 * 107.30065 * 21.48615 * 17 16 15 19 19 C 1.36939 * 125.63054 * 181.00867 * 18 17 16 20 20 H 1.07999 * 119.99998 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00007 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47376 * 59.99784 * 23 21 19 25 25 H 1.48491 * 109.47526 * 179.97438 * 23 21 19 26 26 H 1.48511 * 109.47001 * 300.00318 * 23 21 19 27 27 C 1.47567 * 108.73833 * 1.00072 * 18 17 16 28 28 O 1.41896 * 111.43613 * 309.96682 * 15 14 5 29 29 H 1.08998 * 109.46936 * 299.90172 * 1 2 3 30 30 H 1.08994 * 109.47112 * 59.89980 * 1 2 3 31 31 H 1.08999 * 109.47261 * 179.90278 * 1 2 3 32 32 H 1.09003 * 109.62345 * 53.17817 * 4 2 1 33 33 H 1.09001 * 109.77311 * 292.72126 * 4 2 1 34 34 H 1.09000 * 109.46750 * 299.99887 * 8 6 5 35 35 H 1.08993 * 109.47649 * 59.99897 * 8 6 5 36 36 H 1.09003 * 109.47148 * 359.97438 * 12 11 9 37 37 H 1.08997 * 109.47227 * 120.00341 * 12 11 9 38 38 H 1.09009 * 109.46639 * 239.99972 * 12 11 9 39 39 H 1.09004 * 109.47143 * 89.99603 * 13 11 9 40 40 H 1.08999 * 109.47073 * 209.99632 * 13 11 9 41 41 H 1.08994 * 109.47103 * 330.00152 * 13 11 9 42 42 H 1.09002 * 109.67840 * 168.91735 * 14 5 4 43 43 H 1.08999 * 109.67902 * 289.42943 * 14 5 4 44 44 H 1.09003 * 110.73465 * 325.96495 * 16 15 14 45 45 H 1.08998 * 110.73842 * 89.27688 * 16 15 14 46 46 H 1.08998 * 109.87722 * 262.05148 * 17 16 15 47 47 H 1.09002 * 110.00039 * 140.97877 * 17 16 15 48 48 H 0.97001 * 119.99728 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.37622 * 217.86003 * 27 18 17 50 50 H 1.09001 * 110.38000 * 95.51372 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7246 1.2499 5 7 3.5034 -0.8632 1.1456 6 6 4.3125 -0.4756 2.1513 7 8 5.5143 -0.5993 2.0447 8 6 3.7240 0.1114 3.4084 9 6 4.8332 0.4600 4.3671 10 8 5.9879 0.2517 4.0602 11 7 4.5419 1.0031 5.5658 12 6 5.6202 1.3414 6.4980 13 6 3.1472 1.2552 5.9363 14 6 4.0533 -1.4401 -0.0936 15 6 3.4217 -0.7228 -1.2804 16 6 3.8438 -1.3963 -2.6035 17 6 3.7657 -0.2362 -3.6203 18 7 3.8532 1.0193 -2.8590 19 6 3.8016 2.2800 -3.3910 20 1 3.8745 3.1422 -2.7448 21 6 3.6555 2.4499 -4.7610 22 7 3.5661 1.3991 -5.5485 23 14 3.5858 4.1696 -5.4868 24 1 4.8429 4.8930 -5.1676 25 1 3.4281 4.0790 -6.9605 26 1 2.4317 4.9044 -4.9090 27 6 4.0055 0.6959 -1.4273 28 8 2.0080 -0.6777 -1.1665 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8890 31 1 -0.3634 -1.0276 -0.0017 32 1 1.5843 -1.7117 1.3141 33 1 1.7918 -0.1467 2.1396 34 1 3.1623 1.0120 3.1603 35 1 3.0578 -0.6161 3.8719 36 1 6.5807 1.0837 6.0517 37 1 5.5936 2.4098 6.7121 38 1 5.4885 0.7819 7.4243 39 1 2.7406 0.3778 6.4393 40 1 3.0988 2.1134 6.6066 41 1 2.5645 1.4619 5.0387 42 1 5.1343 -1.3024 -0.1144 43 1 3.8177 -2.5033 -0.1396 44 1 4.8615 -1.7802 -2.5336 45 1 3.1478 -2.1914 -2.8711 46 1 2.8188 -0.2782 -4.1585 47 1 4.5952 -0.3011 -4.3245 48 1 3.4644 1.5178 -6.5059 49 1 3.4436 1.4026 -0.8167 50 1 5.0587 0.7039 -1.1463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131692372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:16 Heat of formation + Delta-G solvation = -87.340411 kcal Electronic energy + Delta-G solvation = -31638.011879 eV Core-core repulsion = 27473.147823 eV Total energy + Delta-G solvation = -4164.864056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93885 -40.95569 -39.51326 -37.89990 -36.49015 -35.69864 -34.86897 -32.99278 -32.25007 -31.06496 -29.81073 -28.60044 -27.72637 -27.14869 -26.61489 -25.22622 -23.13834 -22.01741 -21.47236 -20.45338 -19.67972 -18.98902 -18.74970 -17.95865 -17.32138 -17.20607 -17.12888 -16.78926 -16.41350 -16.25118 -15.87065 -15.56505 -15.44849 -15.08396 -14.57631 -14.53109 -14.23929 -14.02066 -13.92322 -13.68417 -13.57466 -13.37767 -13.27667 -13.08165 -13.03747 -12.99878 -12.87937 -12.87134 -12.77150 -12.66025 -12.19678 -12.10351 -12.03156 -11.96944 -11.70756 -11.52188 -11.00030 -10.85530 -10.71186 -10.51600 -9.62713 -9.48521 -8.93053 -7.87367 -5.23504 1.41851 1.46270 1.52635 1.54882 1.63761 1.69610 2.23911 2.46325 2.66118 3.29166 3.31373 3.45879 3.59167 3.66607 3.77847 3.91888 4.02234 4.09937 4.18883 4.24309 4.28021 4.38664 4.42668 4.46976 4.51281 4.56574 4.57306 4.64583 4.70534 4.72063 4.83334 4.84703 4.92328 4.94591 4.96080 5.02435 5.07028 5.16622 5.32236 5.37515 5.40875 5.55171 5.61573 5.73140 6.15482 6.28462 6.39077 6.41778 7.06553 7.11492 7.28735 7.72308 8.37832 9.22895 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003130 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.849927 B = 8944.804229 C = 9468.172333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.043 0.957 4 C 0.082 3.918 5 N -0.615 5.615 6 C 0.506 3.494 7 O -0.555 6.555 8 C -0.150 4.150 9 C 0.500 3.500 10 O -0.560 6.560 11 N -0.624 5.624 12 C 0.077 3.923 13 C 0.066 3.934 14 C 0.108 3.892 15 C 0.111 3.889 16 C -0.120 4.120 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.981 3.019 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.274 1.274 27 C 0.122 3.878 28 O -0.368 6.368 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.014 0.986 47 H 0.008 0.992 48 H 0.248 0.752 49 H 0.038 0.962 50 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 -4.615 26.794 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.001 4.001 3 H 0.061 0.939 4 C -0.039 4.039 5 N -0.350 5.350 6 C 0.295 3.705 7 O -0.431 6.431 8 C -0.192 4.192 9 C 0.287 3.713 10 O -0.437 6.437 11 N -0.359 5.359 12 C -0.065 4.065 13 C -0.075 4.075 14 C -0.016 4.016 15 C 0.069 3.931 16 C -0.158 4.158 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.377 4.377 20 H 0.093 0.907 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.199 1.199 27 C -0.004 4.004 28 O -0.288 6.288 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.186 0.814 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -9.377 -4.762 26.283 28.309 hybrid contribution 0.691 1.171 -1.027 1.704 sum -8.686 -3.591 25.256 26.948 Atomic orbital electron populations 1.21704 0.89999 1.03874 1.03447 1.22801 0.97141 0.95118 0.85085 0.93863 1.22787 0.77780 1.03727 0.99652 1.48307 1.08152 1.62736 1.15798 1.20797 0.86398 0.78015 0.85329 1.90847 1.16607 1.54823 1.80819 1.21728 0.98810 1.06499 0.92141 1.20646 0.90006 0.77640 0.82959 1.90851 1.23415 1.53518 1.75964 1.47908 1.09844 1.62356 1.15838 1.21730 0.90521 1.01521 0.92776 1.22179 0.78928 1.03222 1.03159 1.21870 0.99217 0.98037 0.82454 1.22004 0.82055 0.94156 0.94878 1.22723 1.01946 0.98203 0.92935 1.20873 0.97711 0.83274 0.91443 1.44705 1.85838 1.02346 1.01682 1.19350 1.43197 0.83784 0.91394 0.90684 1.25670 1.02178 1.01450 0.96303 1.70187 1.57151 1.29111 1.03250 0.85126 0.78194 0.78937 0.76901 1.20576 1.21617 1.19937 1.22013 0.96350 0.95884 0.86160 1.87822 1.19111 1.77005 1.44823 0.87183 0.93885 0.90528 0.87965 0.84587 0.82649 0.81416 0.92817 0.90520 0.90149 0.90462 0.89342 0.88893 0.90419 0.88569 0.89277 0.88755 0.96794 0.97421 0.94250 0.94403 0.97431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.57 71.98 0.69 -1.64 16 2 C 0.06 1.37 3.20 30.69 0.10 1.47 16 3 H 0.04 1.26 6.25 -2.39 -0.01 1.24 16 4 C 0.08 1.29 5.81 86.35 0.50 1.80 16 5 N -0.62 -15.37 2.95 -818.65 -2.42 -17.79 16 6 C 0.51 14.14 7.71 87.66 0.68 14.82 16 7 O -0.55 -22.62 13.67 20.41 0.28 -22.35 16 8 C -0.15 -2.32 3.11 29.10 0.09 -2.23 16 9 C 0.50 11.74 7.67 87.66 0.67 12.41 16 10 O -0.56 -20.83 13.51 20.41 0.28 -20.55 16 11 N -0.62 -9.27 3.27 -871.88 -2.85 -12.13 16 12 C 0.08 1.10 10.69 127.77 1.37 2.47 16 13 C 0.07 0.24 10.29 127.77 1.31 1.56 16 14 C 0.11 3.31 5.30 86.01 0.46 3.77 16 15 C 0.11 4.06 0.83 -10.16 -0.01 4.05 16 16 C -0.12 -4.70 6.12 31.55 0.19 -4.51 16 17 C 0.19 10.15 5.39 86.77 0.47 10.62 16 18 N -0.62 -34.40 3.40 -692.76 -2.36 -36.76 16 19 C -0.25 -14.84 10.28 84.03 0.86 -13.97 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 22 N -0.95 -59.26 10.31 21.65 0.22 -59.03 16 23 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 27 C 0.12 5.57 6.18 86.55 0.54 6.10 16 28 O -0.37 -12.74 9.92 -148.95 -1.48 -14.22 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.14 0.81 6.05 -2.39 -0.01 0.80 16 34 H 0.16 1.33 6.93 -2.39 -0.02 1.31 16 35 H 0.17 0.95 7.97 -2.39 -0.02 0.93 16 36 H 0.05 1.16 6.90 -2.39 -0.02 1.14 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.09 0.11 8.07 -2.39 -0.02 0.09 16 41 H 0.09 0.00 6.44 -2.39 -0.02 -0.02 16 42 H 0.08 2.80 6.86 -2.39 -0.02 2.78 16 43 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16 44 H 0.09 3.19 8.00 -2.39 -0.02 3.17 16 45 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.01 0.82 7.38 -2.39 -0.02 0.80 16 47 H 0.01 0.45 7.49 -2.39 -0.02 0.43 16 48 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.04 1.71 6.09 -2.39 -0.01 1.69 16 50 H 0.01 0.39 7.82 -2.39 -0.02 0.37 16 Total: -1.00 -95.55 387.21 3.01 -92.55 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.93 Total: 7.35 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 8.38 Total: 33.44 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -7.41 Total: -125.70 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -0.92 Total: -57.12 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -95.55 3.01 -92.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131692372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.205 kcal (2) G-P(sol) polarization free energy of solvation -95.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds