Wall clock time and date at job start Tue Mar 31 2020 23:41:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.51352 * 2 1
4 4 C 1.53276 * 109.51159 * 120.10652 * 2 1 3
5 5 N 1.47164 * 108.55698 * 172.86390 * 4 2 1
6 6 C 1.34779 * 121.06643 * 128.85267 * 5 4 2
7 7 O 1.21273 * 120.00093 * 180.02562 * 6 5 4
8 8 C 1.50706 * 119.99767 * 359.97438 * 6 5 4
9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5
10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6
11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8
12 12 N 1.34777 * 120.00369 * 180.02562 * 11 10 9
13 13 O 1.21288 * 120.00038 * 0.02562 * 11 10 9
14 14 C 1.47305 * 117.86850 * 309.12495 * 5 4 2
15 15 C 1.52113 * 108.60989 * 49.08117 * 14 5 4
16 16 C 1.54514 * 109.89422 * 72.26105 * 15 14 5
17 17 C 1.55015 * 101.52795 * 153.10060 * 16 15 14
18 18 N 1.47487 * 104.89966 * 323.62530 * 17 16 15
19 19 C 1.36928 * 125.66445 * 204.04993 * 18 17 16
20 20 H 1.07999 * 120.00153 * 179.97438 * 19 18 17
21 21 C 1.38819 * 120.00234 * 359.95609 * 19 18 17
22 22 N 1.31619 * 119.99712 * 0.02562 * 21 19 18
23 23 Si 1.86798 * 120.00047 * 180.02562 * 21 19 18
24 24 H 1.48498 * 109.47006 * 90.00331 * 23 21 19
25 25 H 1.48501 * 109.46949 * 209.99882 * 23 21 19
26 26 H 1.48496 * 109.47239 * 330.00006 * 23 21 19
27 27 C 1.47189 * 108.66893 * 24.01369 * 18 17 16
28 28 O 1.42067 * 111.19222 * 309.80388 * 15 14 5
29 29 H 1.08998 * 109.46899 * 299.90084 * 1 2 3
30 30 H 1.09003 * 109.46626 * 59.89388 * 1 2 3
31 31 H 1.08996 * 109.47386 * 179.89172 * 1 2 3
32 32 H 1.09001 * 109.62632 * 53.13973 * 4 2 1
33 33 H 1.08999 * 109.77474 * 292.68049 * 4 2 1
34 34 H 1.09001 * 109.46797 * 60.00350 * 8 6 5
35 35 H 1.08992 * 109.47518 * 300.00347 * 8 6 5
36 36 H 1.09002 * 109.47398 * 300.00410 * 9 8 6
37 37 H 1.09001 * 109.47194 * 60.00591 * 9 8 6
38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8
39 39 H 1.08998 * 109.47533 * 59.99948 * 10 9 8
40 40 H 0.97003 * 119.99640 * 0.02562 * 12 11 10
41 41 H 0.96993 * 120.00253 * 180.02562 * 12 11 10
42 42 H 1.08995 * 109.67975 * 168.87040 * 14 5 4
43 43 H 1.08999 * 109.67844 * 289.42292 * 14 5 4
44 44 H 1.09004 * 111.01290 * 271.16359 * 16 15 14
45 45 H 1.09002 * 111.01777 * 35.03599 * 16 15 14
46 46 H 1.09006 * 110.35544 * 204.76828 * 17 16 15
47 47 H 1.08998 * 110.35647 * 82.48189 * 17 16 15
48 48 H 0.96993 * 119.99738 * 180.02562 * 22 21 19
49 49 H 1.09001 * 109.90454 * 239.13148 * 27 18 17
50 50 H 1.08999 * 109.91090 * 117.87150 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0420 -0.7247 1.2498
5 7 3.5032 -0.8641 1.1448
6 6 4.3128 -0.4777 2.1507
7 8 5.5145 -0.6010 2.0433
8 6 3.7248 0.1086 3.4083
9 6 4.8514 0.4611 4.3817
10 6 4.2545 1.0558 5.6588
11 6 5.3640 1.4036 6.6173
12 7 5.0734 1.9446 7.8170
13 8 6.5187 1.1967 6.3092
14 6 4.0530 -1.4339 -0.0973
15 6 3.4244 -0.7146 -1.2811
16 6 3.9930 0.7181 -1.3881
17 6 3.8348 1.0018 -2.9039
18 7 4.1125 -0.2884 -3.5622
19 6 4.5443 -0.4503 -4.8515
20 1 4.7200 -1.4418 -5.2417
21 6 4.7557 0.6602 -5.6572
22 7 4.5416 1.8687 -5.1817
23 14 5.3440 0.4394 -7.4163
24 1 4.1711 0.3173 -8.3189
25 1 6.1570 1.6155 -7.8177
26 1 6.1715 -0.7900 -7.5109
27 6 3.8493 -1.3732 -2.6027
28 8 2.0089 -0.6768 -1.1664
29 1 -0.3633 0.5123 0.8909
30 1 -0.3633 0.5155 -0.8891
31 1 -0.3634 -1.0276 -0.0019
32 1 1.5837 -1.7116 1.3143
33 1 1.7923 -0.1466 2.1395
34 1 3.0584 -0.6191 3.8714
35 1 3.1634 1.0096 3.1612
36 1 5.4132 -0.4397 4.6289
37 1 5.5174 1.1890 3.9184
38 1 3.6924 1.9565 5.4119
39 1 3.5887 0.3277 6.1220
40 1 4.1499 2.1098 8.0636
41 1 5.7876 2.1688 8.4338
42 1 5.1341 -1.2962 -0.1173
43 1 3.8168 -2.4967 -0.1497
44 1 3.4033 1.4179 -0.7958
45 1 5.0419 0.7456 -1.0927
46 1 4.5546 1.7544 -3.2259
47 1 2.8187 1.3290 -3.1243
48 1 4.6890 2.6445 -5.7448
49 1 4.7541 -1.9615 -2.4503
50 1 3.0472 -2.0109 -2.9743
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001131703466.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:41:59
Heat of formation + Delta-G solvation = -122.717435 kcal
Electronic energy + Delta-G solvation = -30760.722828 eV
Core-core repulsion = 26594.324709 eV
Total energy + Delta-G solvation = -4166.398118 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.86012 -40.53695 -39.99109 -37.96323 -35.79903 -35.32389 -34.74329 -34.52923
-32.92231 -31.15884 -30.46863 -29.28819 -27.61075 -27.02795 -25.53785 -23.52780
-23.19916 -21.97653 -21.19945 -20.86472 -19.99516 -19.01827 -18.48463 -17.94281
-17.81318 -17.53583 -17.15484 -16.89442 -16.74482 -16.29553 -15.92150 -15.76428
-15.40010 -15.02386 -14.96572 -14.75037 -14.42102 -14.10342 -14.06890 -13.76460
-13.58183 -13.21345 -13.07686 -12.96459 -12.85604 -12.78558 -12.75960 -12.72310
-12.32720 -12.23965 -12.22680 -12.00414 -11.89320 -11.69996 -11.59950 -11.46591
-11.05072 -10.90932 -10.78600 -10.71734 -10.59507 -9.51080 -8.95020 -7.80335
-5.25599 1.44679 1.47666 1.56365 1.62132 1.72765 1.85832 2.45330
2.63464 2.72267 3.29914 3.42797 3.54813 3.59276 3.80304 3.88739
3.94185 3.98544 4.07873 4.09574 4.13542 4.25327 4.38208 4.43837
4.49541 4.59348 4.64457 4.65232 4.69909 4.73844 4.78612 4.79918
4.85332 4.89209 4.95169 5.08078 5.15688 5.18972 5.30160 5.39302
5.41807 5.45036 5.53576 5.71905 5.95818 6.23908 6.35910 6.39521
6.56025 7.06020 7.16163 7.44851 7.72043 8.36977 9.22336
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016155 B = 0.002490 C = 0.002307
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1732.800488 B =11241.902417 C =12134.152916
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.054 3.946
3 H 0.056 0.944
4 C 0.081 3.919
5 N -0.613 5.613
6 C 0.504 3.496
7 O -0.591 6.591
8 C -0.126 4.126
9 C -0.090 4.090
10 C -0.130 4.130
11 C 0.503 3.497
12 N -0.839 5.839
13 O -0.607 6.607
14 C 0.106 3.894
15 C 0.116 3.884
16 C -0.148 4.148
17 C 0.168 3.832
18 N -0.624 5.624
19 C -0.240 4.240
20 H 0.084 0.916
21 C -0.070 4.070
22 N -0.951 5.951
23 Si 0.986 3.014
24 H -0.285 1.285
25 H -0.293 1.293
26 H -0.268 1.268
27 C 0.146 3.854
28 O -0.375 6.375
29 H 0.111 0.889
30 H 0.048 0.952
31 H 0.070 0.930
32 H 0.095 0.905
33 H 0.140 0.860
34 H 0.138 0.862
35 H 0.128 0.872
36 H 0.045 0.955
37 H 0.038 0.962
38 H 0.130 0.870
39 H 0.135 0.865
40 H 0.421 0.579
41 H 0.402 0.598
42 H 0.076 0.924
43 H 0.085 0.915
44 H 0.080 0.920
45 H 0.055 0.945
46 H 0.070 0.930
47 H -0.014 1.014
48 H 0.247 0.753
49 H 0.045 0.955
50 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.258 -1.565 28.473 31.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.004 4.004
3 H 0.074 0.926
4 C -0.040 4.040
5 N -0.346 5.346
6 C 0.295 3.705
7 O -0.471 6.471
8 C -0.165 4.165
9 C -0.129 4.129
10 C -0.169 4.169
11 C 0.290 3.710
12 N -0.403 5.403
13 O -0.488 6.488
14 C -0.018 4.018
15 C 0.075 3.925
16 C -0.187 4.187
17 C 0.043 3.957
18 N -0.350 5.350
19 C -0.368 4.368
20 H 0.102 0.898
21 C -0.262 4.262
22 N -0.601 5.601
23 Si 0.813 3.187
24 H -0.211 1.211
25 H -0.219 1.219
26 H -0.193 1.193
27 C 0.021 3.979
28 O -0.295 6.295
29 H 0.130 0.870
30 H 0.067 0.933
31 H 0.090 0.910
32 H 0.113 0.887
33 H 0.158 0.842
34 H 0.155 0.845
35 H 0.146 0.854
36 H 0.064 0.936
37 H 0.057 0.943
38 H 0.148 0.852
39 H 0.153 0.847
40 H 0.253 0.747
41 H 0.233 0.767
42 H 0.095 0.905
43 H 0.103 0.897
44 H 0.099 0.901
45 H 0.073 0.927
46 H 0.088 0.912
47 H 0.004 0.996
48 H 0.057 0.943
49 H 0.063 0.937
50 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -12.061 -1.811 27.778 30.338
hybrid contribution 0.889 0.410 -1.076 1.454
sum -11.172 -1.402 26.703 28.979
Atomic orbital electron populations
1.21728 0.89957 1.03766 1.03738 1.22882 0.97147 0.95546 0.84803
0.92595 1.22781 0.77721 1.03524 0.99989 1.48332 1.08311 1.62509
1.15486 1.21695 0.86198 0.76785 0.85844 1.90723 1.17445 1.56975
1.81983 1.21783 0.99609 1.04336 0.90792 1.20985 0.96771 1.00666
0.94492 1.21692 0.96470 1.05366 0.93374 1.21395 0.90460 0.75623
0.83532 1.43786 1.13808 1.65092 1.17615 1.90787 1.24661 1.55765
1.77630 1.21745 0.99130 0.97810 0.83135 1.21776 0.81872 0.94799
0.94076 1.23279 0.99997 0.97266 0.98123 1.21569 0.96987 0.89240
0.87900 1.44805 1.78234 1.02034 1.09972 1.19490 1.36497 0.93505
0.87353 0.89811 1.25714 1.02596 0.94987 1.02926 1.70067 1.56267
0.97581 1.36164 0.84971 0.77663 0.77057 0.78991 1.21142 1.21900
1.19279 1.21229 0.97533 0.91269 0.87915 1.87884 1.19186 1.77429
1.44981 0.87032 0.93323 0.91048 0.88716 0.84211 0.84453 0.85364
0.93595 0.94262 0.85216 0.84724 0.74734 0.76720 0.90505 0.89703
0.90124 0.92663 0.91248 0.99565 0.94288 0.93683 0.94740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.08 9.57 71.98 0.69 -1.39 16
2 C 0.05 1.19 3.17 30.69 0.10 1.29 16
3 H 0.06 1.35 6.13 -2.39 -0.01 1.34 16
4 C 0.08 1.23 5.82 86.35 0.50 1.73 16
5 N -0.61 -14.81 2.92 -819.22 -2.39 -17.20 16
6 C 0.50 12.87 7.71 87.66 0.68 13.54 16
7 O -0.59 -22.08 15.47 -3.01 -0.05 -22.12 16
8 C -0.13 -1.58 4.07 29.85 0.12 -1.46 16
9 C -0.09 -1.64 3.79 30.59 0.12 -1.52 16
10 C -0.13 -1.01 5.70 29.85 0.17 -0.84 16
11 C 0.50 7.84 8.10 87.66 0.71 8.55 16
12 N -0.84 -5.20 8.87 -173.53 -1.54 -6.74 16
13 O -0.61 -17.79 16.82 -3.05 -0.05 -17.84 16
14 C 0.11 3.34 5.13 85.93 0.44 3.78 16
15 C 0.12 4.28 0.83 -10.35 -0.01 4.27 16
16 C -0.15 -6.18 5.90 31.80 0.19 -5.99 16
17 C 0.17 8.97 5.89 86.88 0.51 9.48 16
18 N -0.62 -34.45 3.40 -692.51 -2.36 -36.81 16
19 C -0.24 -14.12 10.28 84.04 0.86 -13.25 16
20 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16
21 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16
22 N -0.95 -59.12 10.09 21.65 0.22 -58.90 16
23 Si 0.99 47.36 29.55 68.60 2.03 49.39 16
24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16
25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16
26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
27 C 0.15 6.53 6.61 86.47 0.57 7.10 16
28 O -0.38 -12.64 9.87 -148.97 -1.47 -14.11 16
29 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.14 0.76 6.05 -2.39 -0.01 0.74 16
34 H 0.14 0.59 8.00 -2.39 -0.02 0.58 16
35 H 0.13 0.82 7.67 -2.39 -0.02 0.80 16
36 H 0.05 1.12 8.06 -2.39 -0.02 1.10 16
37 H 0.04 1.02 8.06 -2.39 -0.02 1.00 16
38 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16
39 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16
40 H 0.42 -0.87 8.83 -92.71 -0.82 -1.69 16
41 H 0.40 2.54 8.93 -92.71 -0.83 1.72 16
42 H 0.08 2.85 6.87 -2.39 -0.02 2.83 16
43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
44 H 0.08 2.98 5.98 -2.38 -0.01 2.96 16
45 H 0.05 2.44 7.84 -2.39 -0.02 2.42 16
46 H 0.07 4.20 5.88 -2.38 -0.01 4.19 16
47 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16
48 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16
49 H 0.05 1.95 7.79 -2.39 -0.02 1.93 16
50 H 0.03 1.55 8.06 -2.39 -0.02 1.53 16
Total: -1.00 -94.13 391.83 -0.18 -94.31
By element:
Atomic # 1 Polarization: 9.10 SS G_CDS: -0.68 Total: 8.42 kcal
Atomic # 6 Polarization: 15.50 SS G_CDS: 6.12 Total: 21.61 kcal
Atomic # 7 Polarization: -113.58 SS G_CDS: -6.07 Total: -119.65 kcal
Atomic # 8 Polarization: -52.51 SS G_CDS: -1.57 Total: -54.08 kcal
Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal
Total: -94.13 -0.18 -94.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131703466.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.407 kcal
(2) G-P(sol) polarization free energy of solvation -94.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.717 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds