Wall clock time and date at job start Tue Mar 31 2020 23:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.51247 * 2 1 4 4 C 1.53291 * 109.51784 * 120.10048 * 2 1 3 5 5 N 1.47155 * 108.49670 * 172.95997 * 4 2 1 6 6 C 1.34785 * 121.05608 * 128.78730 * 5 4 2 7 7 O 1.21282 * 119.99923 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99662 * 0.02562 * 6 5 4 9 9 C 1.53003 * 109.46866 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47355 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.47398 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00433 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99980 * 0.02562 * 11 10 9 14 14 C 1.47286 * 117.88769 * 308.79977 * 5 4 2 15 15 C 1.52514 * 108.46136 * 49.33694 * 14 5 4 16 16 C 1.54525 * 110.04318 * 187.27439 * 15 14 5 17 17 C 1.55022 * 101.56847 * 206.94217 * 16 15 14 18 18 N 1.47493 * 104.89543 * 36.35515 * 17 16 15 19 19 C 1.36937 * 125.65696 * 155.94471 * 18 17 16 20 20 H 1.08001 * 119.99255 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00434 * 0.03058 * 19 18 17 22 22 N 1.31613 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47306 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47032 * 119.99540 * 23 21 19 26 26 H 1.48494 * 109.47369 * 239.99736 * 23 21 19 27 27 C 1.47186 * 108.67198 * 335.98457 * 18 17 16 28 28 O 1.42062 * 111.13782 * 309.78844 * 15 14 5 29 29 H 1.09004 * 109.46807 * 299.90126 * 1 2 3 30 30 H 1.08998 * 109.47189 * 59.89931 * 1 2 3 31 31 H 1.08993 * 109.47217 * 179.90144 * 1 2 3 32 32 H 1.09002 * 109.62820 * 53.25817 * 4 2 1 33 33 H 1.09003 * 109.79581 * 292.76209 * 4 2 1 34 34 H 1.09004 * 109.47179 * 299.99875 * 8 6 5 35 35 H 1.08996 * 109.47595 * 60.00556 * 8 6 5 36 36 H 1.08999 * 109.46860 * 300.00261 * 9 8 6 37 37 H 1.09003 * 109.47391 * 59.99740 * 9 8 6 38 38 H 1.08999 * 109.47322 * 299.99945 * 10 9 8 39 39 H 1.09003 * 109.47111 * 59.99535 * 10 9 8 40 40 H 0.97006 * 119.99346 * 0.02562 * 12 11 10 41 41 H 0.96995 * 120.00284 * 180.02562 * 12 11 10 42 42 H 1.09004 * 109.64465 * 289.64093 * 14 5 4 43 43 H 1.09003 * 109.80904 * 169.12329 * 14 5 4 44 44 H 1.09002 * 111.01565 * 88.85881 * 16 15 14 45 45 H 1.09000 * 111.01102 * 325.02085 * 16 15 14 46 46 H 1.08993 * 110.35347 * 155.21204 * 17 16 15 47 47 H 1.09002 * 110.35424 * 277.50776 * 17 16 15 48 48 H 0.97003 * 119.99670 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.90608 * 120.87716 * 27 18 17 50 50 H 1.09002 * 109.90468 * 241.95008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0421 -0.7246 1.2500 5 7 3.5035 -0.8612 1.1446 6 6 4.3125 -0.4725 2.1501 7 8 5.5145 -0.5934 2.0426 8 6 3.7235 0.1122 3.4079 9 6 4.8494 0.4679 4.3809 10 6 4.2515 1.0609 5.6582 11 6 5.3605 1.4106 6.6167 12 7 5.0688 1.9507 7.8167 13 8 6.5155 1.2061 6.3084 14 6 4.0541 -1.4358 -0.0948 15 6 3.4242 -0.7156 -1.2825 16 6 3.8357 -1.4086 -2.6009 17 6 3.7427 -0.2360 -3.6106 18 7 4.2024 0.9477 -2.8604 19 6 4.7298 2.0858 -3.4098 20 1 5.0384 2.9005 -2.7715 21 6 4.8675 2.1923 -4.7869 22 7 4.4917 1.1993 -5.5646 23 14 5.5863 3.7451 -5.5363 24 1 5.9279 4.7043 -4.4552 25 1 6.8131 3.4040 -6.3005 26 1 4.5901 4.3614 -6.4489 27 6 4.0010 0.7022 -1.4232 28 8 2.0089 -0.6768 -1.1662 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0276 -0.0018 32 1 1.5856 -1.7124 1.3135 33 1 1.7914 -0.1474 2.1400 34 1 3.1595 1.0118 3.1610 35 1 3.0593 -0.6172 3.8714 36 1 5.4137 -0.4314 4.6278 37 1 5.5134 1.1975 3.9173 38 1 3.6869 1.9601 5.4116 39 1 3.5878 0.3310 6.1216 40 1 4.1450 2.1139 8.0634 41 1 5.7827 2.1761 8.4335 42 1 3.8168 -2.4986 -0.1429 43 1 5.1355 -1.3007 -0.1160 44 1 3.1361 -2.2035 -2.8596 45 1 4.8543 -1.7918 -2.5397 46 1 4.3934 -0.4193 -4.4655 47 1 2.7124 -0.0997 -3.9395 48 1 4.5883 1.2736 -6.5270 49 1 4.9540 0.7683 -0.8983 50 1 3.3018 1.4327 -1.0162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131703467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:04 Heat of formation + Delta-G solvation = -92.702917 kcal Electronic energy + Delta-G solvation = -30886.897677 eV Core-core repulsion = 26721.801086 eV Total energy + Delta-G solvation = -4165.096591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62795 -39.78489 -38.75959 -36.34182 -34.62328 -34.49327 -33.97139 -33.12860 -31.32226 -29.74431 -29.06891 -27.88580 -26.50265 -25.60549 -23.99471 -22.59188 -21.85628 -20.60273 -20.29076 -19.58707 -18.72807 -17.81059 -17.02258 -16.99730 -16.93038 -16.51443 -16.32549 -15.82235 -15.36158 -14.74991 -14.66951 -14.25983 -14.22806 -14.04031 -13.56340 -13.47336 -13.37261 -12.89241 -12.59760 -12.42882 -12.30389 -12.19972 -12.18479 -11.91960 -11.65057 -11.54221 -11.46129 -11.06729 -11.00291 -10.89178 -10.84730 -10.47410 -10.33734 -10.28311 -10.05346 -10.04626 -9.93670 -9.65446 -9.54258 -9.51399 -8.61593 -8.33361 -6.79502 -5.61813 -3.03036 2.34017 2.65195 2.85618 3.21974 3.42503 3.47980 3.50573 3.84200 4.30801 4.46396 4.51326 4.67021 4.69806 4.73717 4.85709 5.03673 5.07523 5.08670 5.17534 5.19952 5.27683 5.29911 5.39850 5.49194 5.53171 5.57484 5.61628 5.71769 5.88230 5.90827 5.96151 6.03876 6.13239 6.18313 6.28996 6.34994 6.41610 6.49563 6.56350 6.65273 6.72402 6.95014 7.38295 7.59386 7.65859 7.66095 7.88747 7.94091 8.19672 8.38831 9.25548 9.85694 10.50884 11.42302 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.002860 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.334760 B = 9788.560869 C =11112.877908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.068 0.932 4 C 0.080 3.920 5 N -0.615 5.615 6 C 0.514 3.486 7 O -0.533 6.533 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.142 4.142 11 C 0.513 3.487 12 N -0.861 5.861 13 O -0.536 6.536 14 C 0.098 3.902 15 C 0.095 3.905 16 C -0.130 4.130 17 C 0.157 3.843 18 N -0.601 5.601 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.122 3.878 28 O -0.353 6.353 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.017 0.983 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -3.830 24.140 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.008 3.992 3 H 0.086 0.914 4 C -0.043 4.043 5 N -0.349 5.349 6 C 0.302 3.698 7 O -0.409 6.409 8 C -0.179 4.179 9 C -0.130 4.130 10 C -0.182 4.182 11 C 0.298 3.702 12 N -0.425 5.425 13 O -0.412 6.412 14 C -0.024 4.024 15 C 0.054 3.946 16 C -0.169 4.169 17 C 0.033 3.967 18 N -0.327 5.327 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.004 4.004 28 O -0.272 6.272 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.228 0.772 41 H 0.230 0.770 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.125 0.875 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.047 0.953 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.989 -4.087 23.368 25.369 hybrid contribution 0.051 1.180 0.277 1.213 sum -8.938 -2.907 23.645 25.445 Atomic orbital electron populations 1.21688 0.92504 1.02869 1.02733 1.22453 0.95193 0.96360 0.85171 0.91411 1.22500 0.80298 1.01831 0.99703 1.48233 1.06683 1.62998 1.17013 1.20620 0.86837 0.77812 0.84539 1.90738 1.14602 1.54753 1.80790 1.21699 0.99885 1.02225 0.94090 1.21101 0.96706 1.02950 0.92242 1.21696 0.97296 1.03145 0.96067 1.20773 0.90754 0.76274 0.82360 1.43938 1.12375 1.67217 1.18981 1.90803 1.21755 1.52557 1.76046 1.22222 1.00823 0.97028 0.82341 1.22315 0.80650 0.96650 0.94954 1.23011 1.00279 0.99808 0.93821 1.21944 0.98777 0.82143 0.93874 1.44507 1.73049 1.16097 0.99013 1.19109 1.32927 0.92500 0.90305 0.90604 1.24773 1.01686 0.98326 0.95876 1.69803 1.53318 1.30593 1.03312 0.85997 0.78351 0.82150 0.79014 1.20565 1.21700 1.21772 1.21713 0.97119 0.92919 0.88634 1.87865 1.20552 1.76694 1.42114 0.91247 0.91177 0.91797 0.90622 0.89168 0.88784 0.88930 0.90313 0.90125 0.88594 0.88718 0.77153 0.76974 0.91062 0.87927 0.91042 0.90573 0.87492 0.96467 0.93783 0.95262 0.95925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.57 37.16 0.36 -1.05 16 2 C 0.07 0.88 3.17 -26.58 -0.08 0.79 16 3 H 0.07 1.00 6.25 -51.93 -0.32 0.68 16 4 C 0.08 0.83 5.82 -3.53 -0.02 0.81 16 5 N -0.62 -8.43 2.95 -172.63 -0.51 -8.94 16 6 C 0.51 7.26 7.71 -10.98 -0.08 7.18 16 7 O -0.53 -9.92 15.47 5.56 0.09 -9.83 16 8 C -0.14 -1.24 4.07 -27.88 -0.11 -1.36 16 9 C -0.09 -0.94 3.79 -26.73 -0.10 -1.04 16 10 C -0.14 -0.89 5.70 -27.89 -0.16 -1.05 16 11 C 0.51 4.58 8.10 -10.99 -0.09 4.49 16 12 N -0.86 -4.06 8.87 31.22 0.28 -3.78 16 13 O -0.54 -7.77 16.82 5.56 0.09 -7.67 16 14 C 0.10 1.58 5.19 -3.86 -0.02 1.56 16 15 C 0.09 1.75 0.81 -89.70 -0.07 1.68 16 16 C -0.13 -2.56 6.21 -24.86 -0.15 -2.72 16 17 C 0.16 3.95 5.89 -2.43 -0.01 3.94 16 18 N -0.60 -16.04 3.40 -170.20 -0.58 -16.62 16 19 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -27.37 10.09 55.49 0.56 -26.81 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.12 2.73 6.34 -3.30 -0.02 2.71 16 28 O -0.35 -6.15 9.90 -35.23 -0.35 -6.50 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.63 6.05 -51.93 -0.31 0.32 16 34 H 0.09 0.67 7.67 -51.93 -0.40 0.27 16 35 H 0.09 0.56 8.00 -51.93 -0.42 0.15 16 36 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 37 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.40 0.52 8.83 -40.82 -0.36 0.15 16 41 H 0.40 1.73 8.93 -40.82 -0.36 1.36 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.85 6.84 -51.93 -0.36 1.49 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 46 H 0.11 2.98 5.88 -51.93 -0.31 2.67 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.03 0.69 7.61 -51.93 -0.40 0.29 16 50 H 0.02 0.51 6.05 -51.93 -0.31 0.20 16 LS Contribution 392.17 15.07 5.91 5.91 Total: -1.00 -38.37 392.17 -8.51 -46.88 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.15 Total: 0.72 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.83 Total: 9.02 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.25 Total: -56.15 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.17 Total: -24.00 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.37 -8.51 -46.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131703467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.823 kcal (2) G-P(sol) polarization free energy of solvation -38.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds