Wall clock time and date at job start Tue Mar 31 2020 23:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.51247 * 2 1 4 4 C 1.53291 * 109.51784 * 120.10048 * 2 1 3 5 5 N 1.47155 * 108.49670 * 172.95997 * 4 2 1 6 6 C 1.34785 * 121.05608 * 128.78730 * 5 4 2 7 7 O 1.21282 * 119.99923 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99662 * 0.02562 * 6 5 4 9 9 C 1.53003 * 109.46866 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47355 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.47398 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00433 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99980 * 0.02562 * 11 10 9 14 14 C 1.47286 * 117.88769 * 308.79977 * 5 4 2 15 15 C 1.52514 * 108.46136 * 49.33694 * 14 5 4 16 16 C 1.54525 * 110.04318 * 187.27439 * 15 14 5 17 17 C 1.55022 * 101.56847 * 206.94217 * 16 15 14 18 18 N 1.47493 * 104.89543 * 36.35515 * 17 16 15 19 19 C 1.36937 * 125.65696 * 155.94471 * 18 17 16 20 20 H 1.08001 * 119.99255 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00434 * 0.03058 * 19 18 17 22 22 N 1.31613 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47306 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47032 * 119.99540 * 23 21 19 26 26 H 1.48494 * 109.47369 * 239.99736 * 23 21 19 27 27 C 1.47186 * 108.67198 * 335.98457 * 18 17 16 28 28 O 1.42062 * 111.13782 * 309.78844 * 15 14 5 29 29 H 1.09004 * 109.46807 * 299.90126 * 1 2 3 30 30 H 1.08998 * 109.47189 * 59.89931 * 1 2 3 31 31 H 1.08993 * 109.47217 * 179.90144 * 1 2 3 32 32 H 1.09002 * 109.62820 * 53.25817 * 4 2 1 33 33 H 1.09003 * 109.79581 * 292.76209 * 4 2 1 34 34 H 1.09004 * 109.47179 * 299.99875 * 8 6 5 35 35 H 1.08996 * 109.47595 * 60.00556 * 8 6 5 36 36 H 1.08999 * 109.46860 * 300.00261 * 9 8 6 37 37 H 1.09003 * 109.47391 * 59.99740 * 9 8 6 38 38 H 1.08999 * 109.47322 * 299.99945 * 10 9 8 39 39 H 1.09003 * 109.47111 * 59.99535 * 10 9 8 40 40 H 0.97006 * 119.99346 * 0.02562 * 12 11 10 41 41 H 0.96995 * 120.00284 * 180.02562 * 12 11 10 42 42 H 1.09004 * 109.64465 * 289.64093 * 14 5 4 43 43 H 1.09003 * 109.80904 * 169.12329 * 14 5 4 44 44 H 1.09002 * 111.01565 * 88.85881 * 16 15 14 45 45 H 1.09000 * 111.01102 * 325.02085 * 16 15 14 46 46 H 1.08993 * 110.35347 * 155.21204 * 17 16 15 47 47 H 1.09002 * 110.35424 * 277.50776 * 17 16 15 48 48 H 0.97003 * 119.99670 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.90608 * 120.87716 * 27 18 17 50 50 H 1.09002 * 109.90468 * 241.95008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0421 -0.7246 1.2500 5 7 3.5035 -0.8612 1.1446 6 6 4.3125 -0.4725 2.1501 7 8 5.5145 -0.5934 2.0426 8 6 3.7235 0.1122 3.4079 9 6 4.8494 0.4679 4.3809 10 6 4.2515 1.0609 5.6582 11 6 5.3605 1.4106 6.6167 12 7 5.0688 1.9507 7.8167 13 8 6.5155 1.2061 6.3084 14 6 4.0541 -1.4358 -0.0948 15 6 3.4242 -0.7156 -1.2825 16 6 3.8357 -1.4086 -2.6009 17 6 3.7427 -0.2360 -3.6106 18 7 4.2024 0.9477 -2.8604 19 6 4.7298 2.0858 -3.4098 20 1 5.0384 2.9005 -2.7715 21 6 4.8675 2.1923 -4.7869 22 7 4.4917 1.1993 -5.5646 23 14 5.5863 3.7451 -5.5363 24 1 5.9279 4.7043 -4.4552 25 1 6.8131 3.4040 -6.3005 26 1 4.5901 4.3614 -6.4489 27 6 4.0010 0.7022 -1.4232 28 8 2.0089 -0.6768 -1.1662 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0276 -0.0018 32 1 1.5856 -1.7124 1.3135 33 1 1.7914 -0.1474 2.1400 34 1 3.1595 1.0118 3.1610 35 1 3.0593 -0.6172 3.8714 36 1 5.4137 -0.4314 4.6278 37 1 5.5134 1.1975 3.9173 38 1 3.6869 1.9601 5.4116 39 1 3.5878 0.3310 6.1216 40 1 4.1450 2.1139 8.0634 41 1 5.7827 2.1761 8.4335 42 1 3.8168 -2.4986 -0.1429 43 1 5.1355 -1.3007 -0.1160 44 1 3.1361 -2.2035 -2.8596 45 1 4.8543 -1.7918 -2.5397 46 1 4.3934 -0.4193 -4.4655 47 1 2.7124 -0.0997 -3.9395 48 1 4.5883 1.2736 -6.5270 49 1 4.9540 0.7683 -0.8983 50 1 3.3018 1.4327 -1.0162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131703467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:03 Heat of formation + Delta-G solvation = -123.980132 kcal Electronic energy + Delta-G solvation = -30888.253959 eV Core-core repulsion = 26721.801086 eV Total energy + Delta-G solvation = -4166.452873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83870 -40.54802 -39.99063 -37.95043 -35.80694 -35.34257 -34.80152 -34.54894 -32.95058 -31.12673 -30.46948 -29.12342 -27.71684 -27.08040 -25.56627 -23.55918 -23.09718 -22.12096 -21.21551 -20.85075 -19.90167 -19.03052 -18.49498 -17.97695 -17.83261 -17.56527 -17.16336 -16.88714 -16.81067 -16.32284 -15.96596 -15.64910 -15.44647 -15.03596 -14.97957 -14.80434 -14.47038 -14.15767 -14.02235 -13.74367 -13.50215 -13.19695 -13.06839 -13.03667 -12.84370 -12.84061 -12.75370 -12.67996 -12.33443 -12.28437 -12.12957 -11.98886 -11.94016 -11.72058 -11.69211 -11.48750 -11.06256 -10.92974 -10.80056 -10.72530 -10.61035 -9.51786 -8.96118 -7.82770 -5.28153 1.42160 1.44135 1.54428 1.60769 1.71185 1.86479 2.44334 2.62037 2.70707 3.25995 3.41138 3.54923 3.62668 3.78320 3.86421 3.92503 4.01245 4.06452 4.07543 4.13156 4.24233 4.39389 4.43625 4.53307 4.58654 4.62499 4.63281 4.67080 4.71969 4.74979 4.81496 4.85074 4.92077 4.97526 5.05180 5.14130 5.17166 5.30772 5.38075 5.38452 5.43393 5.57468 5.74826 5.94461 6.24111 6.34267 6.37914 6.54444 7.04972 7.14995 7.43354 7.70071 8.34845 9.19372 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.002860 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.334760 B = 9788.560869 C =11112.877908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 H 0.045 0.955 4 C 0.083 3.917 5 N -0.617 5.617 6 C 0.502 3.498 7 O -0.592 6.592 8 C -0.126 4.126 9 C -0.090 4.090 10 C -0.130 4.130 11 C 0.504 3.496 12 N -0.839 5.839 13 O -0.607 6.607 14 C 0.105 3.895 15 C 0.113 3.887 16 C -0.119 4.119 17 C 0.162 3.838 18 N -0.623 5.623 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.983 3.017 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.287 1.287 27 C 0.125 3.875 28 O -0.371 6.371 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.421 0.579 41 H 0.403 0.597 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.076 0.924 47 H -0.011 1.011 48 H 0.250 0.750 49 H 0.010 0.990 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 -3.833 27.154 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.004 4.004 3 H 0.063 0.937 4 C -0.039 4.039 5 N -0.350 5.350 6 C 0.293 3.707 7 O -0.472 6.472 8 C -0.165 4.165 9 C -0.129 4.129 10 C -0.169 4.169 11 C 0.290 3.710 12 N -0.403 5.403 13 O -0.488 6.488 14 C -0.018 4.018 15 C 0.072 3.928 16 C -0.158 4.158 17 C 0.037 3.963 18 N -0.349 5.349 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.256 4.256 22 N -0.595 5.595 23 Si 0.811 3.189 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.213 1.213 27 C -0.001 4.001 28 O -0.291 6.291 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.253 0.747 41 H 0.233 0.767 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.007 0.993 48 H 0.059 0.941 49 H 0.028 0.972 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -12.355 -4.072 26.453 29.479 hybrid contribution 1.017 1.239 -0.627 1.721 sum -11.338 -2.833 25.826 28.347 Atomic orbital electron populations 1.21711 0.89726 1.03965 1.03600 1.22841 0.97287 0.95202 0.85079 0.93694 1.22775 0.77688 1.03625 0.99766 1.48378 1.08364 1.62388 1.15834 1.21703 0.86245 0.76795 0.85933 1.90721 1.17419 1.57015 1.82025 1.21779 0.99630 1.04264 0.90873 1.20982 0.96747 1.00675 0.94488 1.21692 0.96509 1.05357 0.93364 1.21380 0.90438 0.75635 0.83528 1.43782 1.13798 1.65124 1.17585 1.90784 1.24616 1.55797 1.77622 1.21916 0.99075 0.98019 0.82821 1.21953 0.81780 0.93738 0.95350 1.22864 1.01550 0.98325 0.93080 1.21684 0.96067 0.83960 0.94547 1.44812 1.72956 1.16077 1.01035 1.19419 1.33554 0.93471 0.90934 0.90931 1.25652 1.02166 1.01586 0.96188 1.70047 1.53925 1.32239 1.03266 0.84952 0.77384 0.78523 0.78090 1.19491 1.21454 1.21318 1.21796 0.96319 0.95860 0.86123 1.87842 1.19142 1.77185 1.44889 0.87272 0.93461 0.90525 0.88177 0.84504 0.85726 0.84233 0.93416 0.94487 0.85344 0.84586 0.74732 0.76695 0.88725 0.90751 0.88535 0.90009 0.90614 0.99295 0.94054 0.97166 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.57 71.98 0.69 -1.47 16 2 C 0.05 1.27 3.17 30.69 0.10 1.37 16 3 H 0.05 1.26 6.25 -2.38 -0.01 1.25 16 4 C 0.08 1.33 5.82 86.35 0.50 1.83 16 5 N -0.62 -15.58 2.95 -818.48 -2.41 -17.99 16 6 C 0.50 13.59 7.71 87.66 0.68 14.26 16 7 O -0.59 -22.97 15.47 -3.04 -0.05 -23.01 16 8 C -0.13 -1.77 4.07 29.85 0.12 -1.65 16 9 C -0.09 -1.76 3.79 30.59 0.12 -1.64 16 10 C -0.13 -1.16 5.70 29.84 0.17 -0.99 16 11 C 0.50 8.32 8.10 87.65 0.71 9.03 16 12 N -0.84 -5.88 8.87 -173.53 -1.54 -7.42 16 13 O -0.61 -18.35 16.82 -3.04 -0.05 -18.40 16 14 C 0.11 3.33 5.19 86.07 0.45 3.77 16 15 C 0.11 4.18 0.81 -10.20 -0.01 4.17 16 16 C -0.12 -4.78 6.21 31.80 0.20 -4.58 16 17 C 0.16 8.54 5.89 86.88 0.51 9.05 16 18 N -0.62 -34.82 3.40 -692.38 -2.36 -37.18 16 19 C -0.24 -14.73 10.28 84.03 0.86 -13.86 16 20 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 22 N -0.95 -58.25 10.09 21.65 0.22 -58.04 16 23 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.12 5.78 6.34 86.49 0.55 6.33 16 28 O -0.37 -12.50 9.90 -148.97 -1.47 -13.97 16 29 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.14 0.94 6.05 -2.39 -0.01 0.93 16 34 H 0.12 1.07 7.67 -2.39 -0.02 1.05 16 35 H 0.14 0.74 8.00 -2.39 -0.02 0.72 16 36 H 0.05 1.21 8.06 -2.39 -0.02 1.19 16 37 H 0.04 1.02 8.06 -2.39 -0.02 1.00 16 38 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.42 -0.54 8.83 -92.70 -0.82 -1.36 16 41 H 0.40 2.83 8.93 -92.71 -0.83 2.01 16 42 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.07 2.79 6.84 -2.39 -0.02 2.77 16 44 H 0.10 3.35 8.14 -2.39 -0.02 3.34 16 45 H 0.08 3.15 8.01 -2.39 -0.02 3.13 16 46 H 0.08 4.46 5.88 -2.39 -0.01 4.45 16 47 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 48 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 49 H 0.01 0.52 7.61 -2.39 -0.02 0.50 16 50 H 0.02 0.98 6.05 -2.39 -0.01 0.96 16 Total: -1.00 -94.88 392.17 -0.21 -95.09 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.68 Total: 8.91 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.11 Total: 22.35 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.09 Total: -120.62 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -1.57 Total: -55.38 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -94.88 -0.21 -95.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131703467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.890 kcal (2) G-P(sol) polarization free energy of solvation -94.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds