Wall clock time and date at job start Tue Mar 31 2020 23:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00126 * 2 1 4 4 O 1.42903 * 109.46712 * 135.00010 * 3 2 1 5 5 C 1.42898 * 113.99708 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47231 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99796 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00098 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00185 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50520 * 35.07631 * 9 8 6 11 11 C 1.53128 * 109.50484 * 275.00168 * 9 8 6 12 12 C 1.53110 * 109.16132 * 182.36155 * 11 9 8 13 13 C 1.53036 * 109.28050 * 57.65614 * 12 11 9 14 14 H 1.09002 * 109.46372 * 60.83497 * 13 12 11 15 15 C 1.52996 * 109.46622 * 180.80237 * 13 12 11 16 16 N 1.46846 * 109.52430 * 300.82128 * 13 12 11 17 17 C 1.46901 * 111.00244 * 185.83861 * 16 13 12 18 18 C 1.50702 * 109.47238 * 163.93032 * 17 16 13 19 19 O 1.21295 * 119.99765 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99910 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99666 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00071 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99634 * 179.73167 * 21 20 18 24 24 N 1.31409 * 120.00177 * 0.27031 * 23 21 20 25 25 Si 1.86801 * 119.99964 * 180.27498 * 23 21 20 26 26 H 1.48506 * 109.46971 * 89.99188 * 25 23 21 27 27 H 1.48491 * 109.47194 * 209.99804 * 25 23 21 28 28 H 1.48499 * 109.47038 * 329.99895 * 25 23 21 29 29 C 1.46846 * 111.19773 * 61.73751 * 16 13 12 30 30 H 1.08005 * 119.99847 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00022 * 359.97438 * 1 2 3 32 32 H 1.08004 * 119.99637 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46611 * 15.00938 * 3 2 1 34 34 H 1.08996 * 109.47223 * 254.99966 * 3 2 1 35 35 H 1.09005 * 109.47084 * 60.00134 * 5 4 3 36 36 H 1.09000 * 109.47265 * 300.00596 * 5 4 3 37 37 H 0.97000 * 119.99773 * 0.02562 * 8 6 5 38 38 H 1.09009 * 109.51924 * 62.45787 * 11 9 8 39 39 H 1.08995 * 109.57185 * 302.30235 * 11 9 8 40 40 H 1.08997 * 109.50744 * 297.71635 * 12 11 9 41 41 H 1.09001 * 109.50402 * 177.59257 * 12 11 9 42 42 H 1.09003 * 109.47474 * 187.50386 * 15 13 12 43 43 H 1.08996 * 109.47058 * 307.50302 * 15 13 12 44 44 H 1.08996 * 109.47412 * 67.50317 * 15 13 12 45 45 H 1.09001 * 109.47303 * 43.92911 * 17 16 13 46 46 H 1.09008 * 109.46703 * 283.92925 * 17 16 13 47 47 H 0.96996 * 120.00502 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99822 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.46379 * 58.27788 * 29 16 13 50 50 H 1.09003 * 109.45999 * 178.24660 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4351 1.0329 6 6 4.9941 2.2566 2.0620 7 8 5.0903 1.2098 2.6668 8 7 5.8594 3.2598 2.3095 9 6 6.9158 3.0861 3.3095 10 1 7.2662 2.0541 3.2931 11 6 6.3637 3.4164 4.6991 12 6 7.4887 3.2895 5.7299 13 6 8.6370 4.2239 5.3423 14 1 8.2803 5.2539 5.3344 15 6 9.7720 4.0857 6.3589 16 7 9.1306 3.8668 4.0062 17 6 10.3225 4.6518 3.6581 18 6 11.0256 4.0071 2.4914 19 8 10.5774 2.9936 1.9981 20 7 12.1515 4.5571 1.9955 21 6 12.7908 3.9708 0.9338 22 1 12.3918 3.0684 0.4946 23 6 13.9487 4.5411 0.4189 24 7 14.4339 5.6393 0.9531 25 14 14.8155 3.7466 -1.0326 26 1 14.2747 4.3048 -2.2980 27 1 16.2720 4.0240 -0.9516 28 1 14.5885 2.2794 -1.0020 29 6 8.0807 4.0264 2.9921 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3855 2.1160 0.2662 34 1 2.4755 1.4868 -0.9926 35 1 3.2678 3.2693 1.3206 36 1 4.3579 2.6408 0.0618 37 1 5.7826 4.0969 1.8255 38 1 5.5620 2.7208 4.9473 39 1 5.9769 4.4354 4.7055 40 1 7.8482 2.2608 5.7516 41 1 7.1123 3.5649 6.7151 42 1 10.5309 4.8429 6.1615 43 1 9.3767 4.2214 7.3655 44 1 10.2173 3.0945 6.2739 45 1 10.9967 4.6876 4.5139 46 1 10.0242 5.6648 3.3879 47 1 12.5097 5.3678 2.3897 48 1 15.2419 6.0375 0.5934 49 1 7.7265 5.0573 2.9951 50 1 8.4853 3.7844 2.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131947669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:47 Heat of formation + Delta-G solvation = -89.484321 kcal Electronic energy + Delta-G solvation = -29588.404042 eV Core-core repulsion = 25423.447020 eV Total energy + Delta-G solvation = -4164.957022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.23320 -39.20702 -38.04852 -37.49933 -35.00155 -34.16383 -33.94361 -32.65670 -31.50631 -31.17001 -28.71461 -27.66172 -26.38760 -25.47519 -24.56174 -22.98735 -21.59251 -20.66357 -20.27496 -19.72921 -19.08959 -17.84271 -17.49854 -17.15744 -16.64513 -16.10736 -15.96172 -15.54546 -15.11070 -14.82061 -14.74325 -14.57624 -14.26200 -13.96048 -13.87489 -13.70340 -13.54597 -13.21094 -13.02476 -12.57034 -12.47461 -12.41685 -12.22889 -11.97009 -11.83210 -11.49895 -11.42857 -11.33946 -11.07786 -10.93300 -10.85121 -10.63239 -10.38586 -10.31964 -10.29801 -10.19390 -9.80411 -9.66808 -9.47251 -9.06660 -8.45305 -7.95676 -7.85789 -6.40529 -3.81006 1.75872 2.55596 2.69763 3.18147 3.26871 3.33178 3.71016 3.93076 4.01315 4.25050 4.49986 4.66141 4.72756 4.78727 4.82692 4.86858 4.92754 4.95209 4.99534 5.02926 5.11769 5.20848 5.26100 5.36398 5.47647 5.48951 5.53819 5.59364 5.65689 5.77209 5.87271 5.93113 6.03664 6.07475 6.16138 6.19912 6.24286 6.25553 6.26229 6.30578 6.41716 6.48172 6.73734 7.25232 7.39238 7.43886 7.56448 8.08152 8.18053 8.63784 9.20039 9.56522 10.08805 10.77252 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.002396 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.466380 B =11683.733796 C =14022.186091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.515 3.485 7 O -0.516 6.516 8 N -0.723 5.723 9 C 0.152 3.848 10 H 0.101 0.899 11 C -0.129 4.129 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.037 0.963 15 C -0.150 4.150 16 N -0.505 5.505 17 C 0.042 3.958 18 C 0.444 3.556 19 O -0.575 6.575 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.055 3.945 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.398 0.602 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.027 0.973 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.188 1.278 4.225 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.036 4.036 6 C 0.300 3.700 7 O -0.390 6.390 8 N -0.376 5.376 9 C 0.048 3.952 10 H 0.119 0.881 11 C -0.168 4.168 12 C -0.145 4.145 13 C -0.030 4.030 14 H 0.055 0.945 15 C -0.208 4.208 16 N -0.230 5.230 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.458 6.458 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.073 4.073 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.232 0.768 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.077 -0.750 4.404 22.524 hybrid contribution 0.457 1.831 -0.991 2.132 sum -21.620 1.081 3.413 21.915 Atomic orbital electron populations 1.23831 0.95485 1.02290 1.00246 1.22735 0.95614 0.98271 1.00013 1.21625 0.88738 0.96186 0.92483 1.88054 1.44305 1.34935 1.60402 1.22214 0.93224 0.89176 0.98991 1.20137 0.82438 0.83960 0.83491 1.90744 1.71838 1.26687 1.49711 1.45852 1.32041 1.17131 1.42527 1.20950 0.85679 1.02322 0.86232 0.88095 1.21976 0.98545 1.01351 0.94900 1.21563 0.94209 1.01068 0.97679 1.21685 0.95169 0.96725 0.89390 0.94498 1.21945 0.97986 1.03197 0.97638 1.61347 1.04701 1.56389 1.00591 1.21967 0.92931 0.94683 0.99359 1.19787 0.83545 0.87228 0.86558 1.90522 1.66951 1.25963 1.62401 1.41866 1.22351 1.25886 1.30245 1.19688 1.05850 1.09475 1.07618 0.87968 1.25245 0.97209 0.96221 0.99320 1.69609 1.23088 1.19724 1.42015 0.85877 0.78135 0.79590 0.80816 1.20500 1.20959 1.19416 1.22282 0.91053 0.95823 0.98184 0.87701 0.88457 0.86321 0.92601 0.91966 0.90318 0.90012 0.76823 0.91396 0.92329 0.90550 0.91347 0.92320 0.92280 0.91230 0.88551 0.93484 0.77579 0.91949 0.95510 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.31 29.02 0.42 -0.78 16 2 C -0.15 -1.24 9.89 -36.02 -0.36 -1.59 16 3 C 0.09 0.71 6.35 36.01 0.23 0.94 16 4 O -0.36 -4.33 9.86 -55.14 -0.54 -4.87 16 5 C 0.04 0.42 6.42 36.01 0.23 0.65 16 6 C 0.52 6.87 7.87 -10.99 -0.09 6.78 16 7 O -0.52 -9.39 16.16 -14.35 -0.23 -9.62 16 8 N -0.72 -8.37 5.08 -53.73 -0.27 -8.65 16 9 C 0.15 2.14 2.61 -67.85 -0.18 1.96 16 10 H 0.10 1.79 7.58 -51.93 -0.39 1.40 16 11 C -0.13 -1.55 5.58 -26.61 -0.15 -1.70 16 12 C -0.11 -1.26 5.37 -26.66 -0.14 -1.40 16 13 C 0.08 1.00 2.44 -67.73 -0.17 0.83 16 14 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 15 C -0.15 -1.75 8.57 37.16 0.32 -1.43 16 16 N -0.51 -8.14 4.12 -228.12 -0.94 -9.09 16 17 C 0.04 0.72 5.26 -4.97 -0.03 0.70 16 18 C 0.44 10.28 7.47 -10.99 -0.08 10.20 16 19 O -0.57 -15.35 14.42 5.54 0.08 -15.27 16 20 N -0.57 -14.15 5.29 -10.96 -0.06 -14.20 16 21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 C 0.06 0.83 4.58 -3.83 -0.02 0.82 16 30 H 0.10 0.57 8.06 -52.48 -0.42 0.15 16 31 H 0.10 0.52 7.90 -52.49 -0.41 0.11 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.06 0.36 7.86 -51.93 -0.41 -0.05 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 3.33 8.60 -40.82 -0.35 2.97 16 38 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.53 5.55 -51.93 -0.29 1.24 16 46 H 0.05 0.74 8.05 -51.92 -0.42 0.32 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.10 1.86 6.35 -51.93 -0.33 1.53 16 LS Contribution 408.13 15.07 6.15 6.15 Total: -1.00 -34.77 408.13 -8.63 -43.40 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.27 Total: 11.68 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.25 Total: 8.09 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.55 Total: -55.59 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.70 Total: -29.76 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.77 -8.63 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131947669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.086 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds