Wall clock time and date at job start Tue Mar 31 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00046 * 2 1 4 4 O 1.42892 * 109.47314 * 135.27252 * 3 2 1 5 5 C 1.42900 * 114.00205 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47223 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00004 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99792 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99821 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50572 * 325.07625 * 9 8 6 11 11 C 1.53118 * 109.50384 * 85.20150 * 9 8 6 12 12 C 1.53114 * 109.16637 * 62.28236 * 11 9 8 13 13 C 1.53036 * 109.27621 * 57.65529 * 12 11 9 14 14 H 1.09001 * 109.46438 * 60.84013 * 13 12 11 15 15 C 1.53001 * 109.45367 * 180.81222 * 13 12 11 16 16 N 1.46845 * 109.52736 * 300.82092 * 13 12 11 17 17 C 1.46892 * 111.00362 * 185.83743 * 16 13 12 18 18 C 1.50697 * 109.47392 * 160.22421 * 17 16 13 19 19 O 1.21292 * 119.99658 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00233 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99979 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99927 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99922 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47265 * 59.99821 * 25 23 21 27 27 H 1.48500 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47301 * 300.00110 * 25 23 21 29 29 C 1.46853 * 111.19381 * 61.74123 * 16 13 12 30 30 H 1.07999 * 120.00251 * 179.72466 * 1 2 3 31 31 H 1.08007 * 119.99921 * 359.73150 * 1 2 3 32 32 H 1.07997 * 119.99951 * 180.26850 * 2 1 3 33 33 H 1.09003 * 109.46603 * 255.27199 * 3 2 1 34 34 H 1.08998 * 109.47252 * 15.26730 * 3 2 1 35 35 H 1.09002 * 109.47014 * 299.99977 * 5 4 3 36 36 H 1.09001 * 109.46783 * 59.99664 * 5 4 3 37 37 H 0.97004 * 120.00086 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.52487 * 182.19438 * 11 9 8 39 39 H 1.09007 * 109.52010 * 302.37933 * 11 9 8 40 40 H 1.09002 * 109.50179 * 297.71746 * 12 11 9 41 41 H 1.09000 * 109.50601 * 177.60061 * 12 11 9 42 42 H 1.08999 * 109.47010 * 187.76084 * 15 13 12 43 43 H 1.09005 * 109.47254 * 307.75881 * 15 13 12 44 44 H 1.08998 * 109.47260 * 67.75641 * 15 13 12 45 45 H 1.09006 * 109.47147 * 280.22260 * 17 16 13 46 46 H 1.09003 * 109.46872 * 40.22356 * 17 16 13 47 47 H 0.96995 * 119.99964 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99687 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.46300 * 178.24329 * 29 16 13 50 50 H 1.08999 * 109.46150 * 58.27326 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1306 1.2391 0.9481 5 6 3.9126 2.4325 1.0271 6 6 5.0032 2.2516 2.0513 7 8 5.1007 1.2040 2.6546 8 7 5.8694 3.2543 2.2976 9 6 6.9291 3.0787 3.2937 10 1 6.5606 2.4600 4.1120 11 6 8.1363 2.3991 2.6414 12 6 8.6834 3.3025 1.5328 13 6 9.0548 4.6630 2.1271 14 1 9.8257 4.5296 2.8861 15 6 9.5833 5.5760 1.0188 16 7 7.8668 5.2725 2.7381 17 6 8.1527 6.6385 3.1966 18 6 6.8594 7.3945 3.3601 19 8 5.8033 6.8489 3.1189 20 7 6.8761 8.6770 3.7743 21 6 5.6995 9.3649 3.9226 22 1 4.7592 8.8791 3.7079 23 6 5.7169 10.6872 4.3491 24 7 6.8610 11.2782 4.6109 25 14 4.1137 11.6243 4.5518 26 1 3.2608 10.9354 5.5535 27 1 4.4028 13.0058 5.0135 28 1 3.4029 11.6769 3.2490 29 6 7.3515 4.4457 3.8369 30 1 -0.5400 -0.9353 -0.0045 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 -0.0044 33 1 2.4714 1.4891 -0.9940 34 1 1.3866 2.1155 0.2706 35 1 4.3590 2.6394 0.0544 36 1 3.2743 3.2665 1.3188 37 1 5.7906 4.0926 1.8158 38 1 8.9099 2.2330 3.3910 39 1 7.8300 1.4438 2.2148 40 1 7.9225 3.4367 0.7640 41 1 9.5689 2.8434 1.0931 42 1 9.9755 6.4926 1.4594 43 1 10.3781 5.0651 0.4753 44 1 8.7728 5.8206 0.3323 45 1 8.6739 6.5991 4.1531 46 1 8.7790 7.1447 2.4620 47 1 7.7206 9.1132 3.9676 48 1 6.8731 12.2014 4.9083 49 1 6.4908 4.9383 4.2894 50 1 8.1303 4.3132 4.5878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131947670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:50 Heat of formation + Delta-G solvation = -90.803993 kcal Electronic energy + Delta-G solvation = -30213.528138 eV Core-core repulsion = 26048.513891 eV Total energy + Delta-G solvation = -4165.014248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25141 -39.07147 -37.94937 -37.42846 -34.71382 -34.03391 -33.94820 -32.58612 -31.47090 -31.20387 -28.46958 -27.68751 -26.47825 -25.49219 -24.62312 -22.99288 -21.53064 -20.73008 -20.16285 -19.25223 -19.06339 -17.88376 -17.34686 -16.91742 -16.49981 -16.13367 -15.71877 -15.45176 -15.40187 -14.82993 -14.59303 -14.50761 -14.23124 -14.00958 -13.84258 -13.49175 -13.35111 -13.17141 -12.87847 -12.83335 -12.34249 -12.26713 -12.12275 -11.94291 -11.85713 -11.59478 -11.53325 -11.36315 -11.20979 -11.05384 -10.78689 -10.54477 -10.46889 -10.24737 -10.16442 -10.09410 -9.66672 -9.53243 -9.49712 -8.88008 -8.49623 -7.99216 -7.91679 -6.43675 -3.84479 1.87236 2.75829 2.95769 3.17708 3.23885 3.27628 3.82826 3.90142 4.03406 4.20953 4.70252 4.75138 4.79362 4.84997 4.91663 4.95063 5.00137 5.05558 5.12203 5.19275 5.21383 5.23467 5.28754 5.38541 5.42564 5.53497 5.57039 5.58854 5.63981 5.77797 5.82943 5.90964 5.93843 6.01300 6.05646 6.19317 6.22686 6.29296 6.29771 6.36294 6.37109 6.67609 6.90698 7.20076 7.33774 7.52628 7.78725 8.04101 8.41937 8.59864 9.16214 9.53078 10.04551 10.73986 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.002935 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.634544 B = 9537.126988 C =12116.362597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.361 6.361 5 C 0.043 3.957 6 C 0.514 3.486 7 O -0.535 6.535 8 N -0.703 5.703 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.133 4.133 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.038 0.962 15 C -0.150 4.150 16 N -0.510 5.510 17 C 0.039 3.961 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.049 3.951 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.417 0.583 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.098 0.902 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -15.408 -8.717 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.279 6.279 5 C -0.037 4.037 6 C 0.299 3.701 7 O -0.411 6.411 8 N -0.357 5.357 9 C 0.052 3.948 10 H 0.106 0.894 11 C -0.172 4.172 12 C -0.145 4.145 13 C -0.029 4.029 14 H 0.056 0.944 15 C -0.207 4.207 16 N -0.235 5.235 17 C -0.092 4.092 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.079 4.079 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.388 -16.454 -8.621 18.580 hybrid contribution 0.360 1.558 0.497 1.674 sum 0.748 -14.897 -8.124 16.984 Atomic orbital electron populations 1.23840 0.95531 1.02301 1.00211 1.22719 0.95601 0.98190 1.00078 1.21617 0.88850 0.96154 0.92494 1.88015 1.43982 1.35139 1.60753 1.22223 0.93426 0.89155 0.98893 1.20150 0.82270 0.84133 0.83548 1.90690 1.73052 1.27175 1.50232 1.45824 1.30213 1.17546 1.42091 1.20900 0.86898 0.95946 0.91065 0.89411 1.21995 0.97393 0.99069 0.98711 1.21574 1.00833 0.93835 0.98229 1.21671 0.90808 0.94390 0.96075 0.94396 1.21946 1.01036 0.99181 0.98529 1.61444 1.30249 1.00987 1.30844 1.21984 0.97511 0.89806 0.99925 1.19759 0.90049 0.83051 0.84095 1.90478 1.32035 1.68536 1.55173 1.41868 1.09615 1.10006 1.58775 1.19616 0.87102 0.93881 1.42158 0.88025 1.25244 0.98460 0.96988 0.97250 1.69600 1.25089 1.13641 1.46043 0.85941 0.81362 0.78177 0.78872 1.19952 1.21018 1.19939 1.22426 1.00765 0.92704 0.91998 0.87793 0.88348 0.86512 0.92127 0.92442 0.90311 0.89860 0.74607 0.91405 0.91301 0.91063 0.91758 0.92322 0.92374 0.91393 0.93345 0.88720 0.77588 0.91854 0.88375 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.31 29.02 0.42 -1.01 16 2 C -0.15 -1.39 9.89 -36.02 -0.36 -1.75 16 3 C 0.09 0.85 6.35 36.01 0.23 1.08 16 4 O -0.36 -4.91 9.86 -55.14 -0.54 -5.45 16 5 C 0.04 0.52 6.42 36.01 0.23 0.75 16 6 C 0.51 7.65 7.87 -10.99 -0.09 7.57 16 7 O -0.53 -9.90 16.16 -14.35 -0.23 -10.13 16 8 N -0.70 -9.74 4.41 -53.73 -0.24 -9.97 16 9 C 0.16 2.12 2.81 -67.85 -0.19 1.93 16 10 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 11 C -0.13 -1.54 5.67 -26.61 -0.15 -1.69 16 12 C -0.11 -1.14 5.20 -26.65 -0.14 -1.28 16 13 C 0.08 0.92 2.44 -67.72 -0.17 0.75 16 14 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 15 C -0.15 -1.60 8.59 37.16 0.32 -1.28 16 16 N -0.51 -7.33 3.53 -228.12 -0.81 -8.14 16 17 C 0.04 0.63 5.31 -4.98 -0.03 0.60 16 18 C 0.45 9.70 7.49 -10.98 -0.08 9.62 16 19 O -0.58 -14.13 14.74 5.55 0.08 -14.05 16 20 N -0.57 -13.64 5.29 -10.96 -0.06 -13.70 16 21 C -0.30 -8.00 9.68 -14.93 -0.14 -8.14 16 22 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 25 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 29 C 0.05 0.71 4.70 -3.83 -0.02 0.69 16 30 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.10 0.69 7.90 -52.48 -0.41 0.28 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 7.86 -51.93 -0.41 0.11 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.42 5.91 8.17 -40.82 -0.33 5.57 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 43 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.74 8.00 -51.93 -0.42 0.32 16 46 H 0.09 1.40 5.42 -51.93 -0.28 1.12 16 47 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.10 1.73 6.69 -51.92 -0.35 1.38 16 50 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -31.85 406.77 -8.46 -40.31 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -8.23 Total: 14.38 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.26 Total: 8.31 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.38 Total: -55.10 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.69 Total: -29.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.85 -8.46 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131947670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.498 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds