Wall clock time and date at job start Tue Mar 31 2020 23:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00046 * 2 1 4 4 O 1.42892 * 109.47314 * 135.27252 * 3 2 1 5 5 C 1.42900 * 114.00205 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47223 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00004 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99792 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99821 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50572 * 325.07625 * 9 8 6 11 11 C 1.53118 * 109.50384 * 85.20150 * 9 8 6 12 12 C 1.53114 * 109.16637 * 62.28236 * 11 9 8 13 13 C 1.53036 * 109.27621 * 57.65529 * 12 11 9 14 14 H 1.09001 * 109.46438 * 60.84013 * 13 12 11 15 15 C 1.53001 * 109.45367 * 180.81222 * 13 12 11 16 16 N 1.46845 * 109.52736 * 300.82092 * 13 12 11 17 17 C 1.46892 * 111.00362 * 185.83743 * 16 13 12 18 18 C 1.50697 * 109.47392 * 160.22421 * 17 16 13 19 19 O 1.21292 * 119.99658 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00233 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99979 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99927 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99922 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47265 * 59.99821 * 25 23 21 27 27 H 1.48500 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47301 * 300.00110 * 25 23 21 29 29 C 1.46853 * 111.19381 * 61.74123 * 16 13 12 30 30 H 1.07999 * 120.00251 * 179.72466 * 1 2 3 31 31 H 1.08007 * 119.99921 * 359.73150 * 1 2 3 32 32 H 1.07997 * 119.99951 * 180.26850 * 2 1 3 33 33 H 1.09003 * 109.46603 * 255.27199 * 3 2 1 34 34 H 1.08998 * 109.47252 * 15.26730 * 3 2 1 35 35 H 1.09002 * 109.47014 * 299.99977 * 5 4 3 36 36 H 1.09001 * 109.46783 * 59.99664 * 5 4 3 37 37 H 0.97004 * 120.00086 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.52487 * 182.19438 * 11 9 8 39 39 H 1.09007 * 109.52010 * 302.37933 * 11 9 8 40 40 H 1.09002 * 109.50179 * 297.71746 * 12 11 9 41 41 H 1.09000 * 109.50601 * 177.60061 * 12 11 9 42 42 H 1.08999 * 109.47010 * 187.76084 * 15 13 12 43 43 H 1.09005 * 109.47254 * 307.75881 * 15 13 12 44 44 H 1.08998 * 109.47260 * 67.75641 * 15 13 12 45 45 H 1.09006 * 109.47147 * 280.22260 * 17 16 13 46 46 H 1.09003 * 109.46872 * 40.22356 * 17 16 13 47 47 H 0.96995 * 119.99964 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99687 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.46300 * 178.24329 * 29 16 13 50 50 H 1.08999 * 109.46150 * 58.27326 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1306 1.2391 0.9481 5 6 3.9126 2.4325 1.0271 6 6 5.0032 2.2516 2.0513 7 8 5.1007 1.2040 2.6546 8 7 5.8694 3.2543 2.2976 9 6 6.9291 3.0787 3.2937 10 1 6.5606 2.4600 4.1120 11 6 8.1363 2.3991 2.6414 12 6 8.6834 3.3025 1.5328 13 6 9.0548 4.6630 2.1271 14 1 9.8257 4.5296 2.8861 15 6 9.5833 5.5760 1.0188 16 7 7.8668 5.2725 2.7381 17 6 8.1527 6.6385 3.1966 18 6 6.8594 7.3945 3.3601 19 8 5.8033 6.8489 3.1189 20 7 6.8761 8.6770 3.7743 21 6 5.6995 9.3649 3.9226 22 1 4.7592 8.8791 3.7079 23 6 5.7169 10.6872 4.3491 24 7 6.8610 11.2782 4.6109 25 14 4.1137 11.6243 4.5518 26 1 3.2608 10.9354 5.5535 27 1 4.4028 13.0058 5.0135 28 1 3.4029 11.6769 3.2490 29 6 7.3515 4.4457 3.8369 30 1 -0.5400 -0.9353 -0.0045 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 -0.0044 33 1 2.4714 1.4891 -0.9940 34 1 1.3866 2.1155 0.2706 35 1 4.3590 2.6394 0.0544 36 1 3.2743 3.2665 1.3188 37 1 5.7906 4.0926 1.8158 38 1 8.9099 2.2330 3.3910 39 1 7.8300 1.4438 2.2148 40 1 7.9225 3.4367 0.7640 41 1 9.5689 2.8434 1.0931 42 1 9.9755 6.4926 1.4594 43 1 10.3781 5.0651 0.4753 44 1 8.7728 5.8206 0.3323 45 1 8.6739 6.5991 4.1531 46 1 8.7790 7.1447 2.4620 47 1 7.7206 9.1132 3.9676 48 1 6.8731 12.2014 4.9083 49 1 6.4908 4.9383 4.2894 50 1 8.1303 4.3132 4.5878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131947670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:49 Heat of formation + Delta-G solvation = -112.744777 kcal Electronic energy + Delta-G solvation = -30214.479562 eV Core-core repulsion = 26048.513891 eV Total energy + Delta-G solvation = -4165.965672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40238 -40.35104 -39.34224 -38.57872 -36.01127 -35.71207 -34.77419 -33.72012 -33.16204 -32.50529 -29.39904 -29.06269 -27.51435 -26.44951 -26.22017 -24.18075 -22.58588 -21.79768 -20.90930 -20.88721 -20.19274 -19.78714 -18.40458 -17.88898 -17.70626 -17.42952 -16.83125 -16.64930 -16.48455 -16.36732 -15.88056 -15.68576 -15.58072 -15.27367 -15.04420 -14.85398 -14.52286 -14.09169 -14.04575 -13.92561 -13.66772 -13.40225 -13.19684 -13.14652 -13.03661 -12.85635 -12.82294 -12.61725 -12.38686 -12.35305 -12.12240 -11.90458 -11.73459 -11.65929 -11.39308 -11.11803 -11.01089 -10.83833 -10.28637 -10.25406 -9.97914 -9.92870 -9.16141 -8.41694 -5.89029 1.18576 1.41314 1.43109 1.53036 1.59471 1.96578 2.14789 2.30514 2.72653 3.10516 3.25937 3.46480 3.67995 3.81252 3.86995 4.00547 4.06761 4.09236 4.14254 4.22560 4.25747 4.36026 4.42337 4.42796 4.44938 4.47659 4.56075 4.58917 4.59874 4.67791 4.84094 4.90519 4.96747 5.01058 5.04259 5.09440 5.23152 5.32619 5.44383 5.45652 5.57435 5.64261 5.68949 5.93380 6.06126 6.12501 6.28171 6.62717 6.67623 7.19412 7.26034 7.65261 8.20778 8.75540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.002935 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.634544 B = 9537.126988 C =12116.362597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.174 4.174 3 C 0.081 3.919 4 O -0.391 6.391 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.697 5.697 9 C 0.156 3.844 10 H 0.072 0.928 11 C -0.124 4.124 12 C -0.100 4.100 13 C 0.080 3.920 14 H 0.052 0.948 15 C -0.147 4.147 16 N -0.520 5.520 17 C 0.052 3.948 18 C 0.446 3.554 19 O -0.607 6.607 20 N -0.580 5.580 21 C -0.325 4.325 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.274 1.274 28 H -0.271 1.271 29 C 0.057 3.943 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.394 0.606 48 H 0.275 0.725 49 H 0.060 0.940 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -15.471 -9.772 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.005 3.995 4 O -0.311 6.311 5 C -0.034 4.034 6 C 0.297 3.703 7 O -0.457 6.457 8 N -0.350 5.350 9 C 0.051 3.949 10 H 0.091 0.909 11 C -0.163 4.163 12 C -0.138 4.138 13 C -0.028 4.028 14 H 0.070 0.930 15 C -0.204 4.204 16 N -0.245 5.245 17 C -0.079 4.079 18 C 0.233 3.767 19 O -0.492 6.492 20 N -0.218 5.218 21 C -0.455 4.455 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.812 3.188 26 H -0.200 1.200 27 H -0.199 1.199 28 H -0.197 1.197 29 C -0.071 4.071 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.227 0.773 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.237 -16.512 -9.691 19.186 hybrid contribution 0.075 1.497 0.808 1.702 sum 1.312 -15.015 -8.884 17.496 Atomic orbital electron populations 1.24066 0.95035 1.03485 0.97863 1.22771 0.96276 0.97889 1.02293 1.21819 0.88288 0.96781 0.92611 1.87976 1.45086 1.35884 1.62110 1.22272 0.92786 0.89070 0.99273 1.20692 0.82619 0.83481 0.83553 1.90661 1.74244 1.28766 1.52006 1.45845 1.30168 1.17213 1.41728 1.20919 0.87722 0.95367 0.90913 0.90944 1.21921 0.96666 0.98427 0.99285 1.21555 1.01578 0.93171 0.97506 1.21786 0.89780 0.94717 0.96504 0.93023 1.21934 1.01246 0.99223 0.98028 1.61380 1.32200 1.00253 1.30697 1.21832 0.94234 0.90338 1.01519 1.20788 0.91799 0.82371 0.81740 1.90458 1.34010 1.69013 1.55706 1.41946 1.08934 1.10910 1.59987 1.19577 0.87437 0.94786 1.43682 0.90230 1.25959 1.01496 0.97327 0.96660 1.69665 1.26442 1.13974 1.46364 0.85058 0.77786 0.77212 0.78715 1.19981 1.19883 1.19662 1.22263 0.99835 0.92598 0.92447 0.86359 0.87387 0.87120 0.90476 0.91568 0.87463 0.88890 0.74677 0.89754 0.92304 0.91896 0.89260 0.92337 0.89987 0.92692 0.91765 0.86664 0.77275 0.91552 0.92163 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 14.31 67.78 0.97 -1.45 16 2 C -0.17 -3.20 9.89 25.65 0.25 -2.95 16 3 C 0.08 1.55 6.35 71.24 0.45 2.00 16 4 O -0.39 -10.66 9.86 -129.94 -1.28 -11.94 16 5 C 0.05 1.08 6.42 71.24 0.46 1.54 16 6 C 0.51 15.43 7.87 87.66 0.69 16.12 16 7 O -0.58 -22.00 16.16 16.01 0.26 -21.74 16 8 N -0.70 -19.46 4.41 -442.29 -1.95 -21.41 16 9 C 0.16 4.19 2.81 45.04 0.13 4.31 16 10 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 11 C -0.12 -2.68 5.67 30.67 0.17 -2.50 16 12 C -0.10 -1.88 5.20 30.64 0.16 -1.72 16 13 C 0.08 1.62 2.44 44.94 0.11 1.73 16 14 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 15 C -0.15 -2.69 8.59 71.98 0.62 -2.07 16 16 N -0.52 -14.21 3.53 -875.63 -3.09 -17.30 16 17 C 0.05 1.60 5.31 85.56 0.45 2.06 16 18 C 0.45 19.54 7.49 87.66 0.66 20.20 16 19 O -0.61 -30.28 14.74 -3.07 -0.05 -30.33 16 20 N -0.58 -28.32 5.29 -306.98 -1.62 -29.95 16 21 C -0.33 -17.80 9.68 84.04 0.81 -16.99 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.02 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 25 Si 0.99 42.28 29.55 68.60 2.03 44.30 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 29 C 0.06 1.62 4.70 86.33 0.41 2.02 16 30 H 0.12 1.33 8.06 -2.91 -0.02 1.30 16 31 H 0.11 1.33 7.90 -2.91 -0.02 1.31 16 32 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.42 11.82 8.17 -92.71 -0.76 11.07 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.06 1.31 7.73 -2.39 -0.02 1.29 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.07 6.38 -2.39 -0.02 1.06 16 43 H 0.08 1.13 8.13 -2.38 -0.02 1.11 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.83 8.00 -2.38 -0.02 1.81 16 46 H 0.12 3.15 5.42 -2.39 -0.01 3.14 16 47 H 0.39 18.47 7.90 -92.71 -0.73 17.74 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 49 H 0.06 2.18 6.69 -2.38 -0.02 2.17 16 50 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.43 406.77 0.85 -69.58 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -0.54 Total: 45.56 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 6.81 Total: 21.98 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -6.38 Total: -117.41 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -1.07 Total: -64.02 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.43 0.85 -69.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131947670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.165 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds