Wall clock time and date at job start Tue Mar 31 2020 23:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00049 * 2 1 4 4 O 1.42893 * 109.47571 * 134.99601 * 3 2 1 5 5 C 1.42900 * 114.00195 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46955 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00607 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99891 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99987 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.50285 * 35.08337 * 9 8 6 11 11 C 1.53113 * 109.50661 * 275.00307 * 9 8 6 12 12 C 1.53124 * 109.15980 * 297.71475 * 11 9 8 13 13 C 1.53029 * 109.27686 * 302.34217 * 12 11 9 14 14 H 1.08996 * 109.46730 * 299.16466 * 13 12 11 15 15 C 1.53004 * 109.46411 * 179.19301 * 13 12 11 16 16 N 1.46851 * 109.52405 * 59.18085 * 13 12 11 17 17 C 1.46900 * 111.00269 * 174.15702 * 16 13 12 18 18 C 1.50698 * 109.46962 * 64.61921 * 17 16 13 19 19 O 1.21291 * 120.00041 * 354.33617 * 18 17 16 20 20 N 1.34776 * 119.99784 * 174.32936 * 18 17 16 21 21 C 1.37106 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99667 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00249 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00355 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99868 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.46846 * 269.99826 * 25 23 21 27 27 H 1.48495 * 109.47382 * 29.99705 * 25 23 21 28 28 H 1.48499 * 109.47084 * 149.99995 * 25 23 21 29 29 C 1.46843 * 111.19627 * 298.25464 * 16 13 12 30 30 H 1.07998 * 120.00060 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00085 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99544 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47283 * 14.99020 * 3 2 1 34 34 H 1.09005 * 109.46488 * 254.99358 * 3 2 1 35 35 H 1.08997 * 109.47088 * 60.00455 * 5 4 3 36 36 H 1.09000 * 109.47279 * 300.00045 * 5 4 3 37 37 H 0.97002 * 119.99854 * 0.02562 * 8 6 5 38 38 H 1.08995 * 109.52680 * 177.80864 * 11 9 8 39 39 H 1.09001 * 109.57666 * 57.65201 * 11 9 8 40 40 H 1.08996 * 109.50061 * 182.40303 * 12 11 9 41 41 H 1.08994 * 109.53379 * 62.30608 * 12 11 9 42 42 H 1.09001 * 109.47326 * 293.10342 * 15 13 12 43 43 H 1.09008 * 109.46588 * 53.10514 * 15 13 12 44 44 H 1.09001 * 109.47643 * 173.10061 * 15 13 12 45 45 H 1.09003 * 109.47260 * 304.62024 * 17 16 13 46 46 H 1.09000 * 109.47394 * 184.61896 * 17 16 13 47 47 H 0.96996 * 120.00181 * 0.02562 * 20 18 17 48 48 H 0.97004 * 120.00586 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.45988 * 181.75495 * 29 16 13 50 50 H 1.08995 * 109.46727 * 301.72223 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0320 6 6 4.9937 2.2570 2.0621 7 8 5.0889 1.2109 2.6683 8 7 5.8594 3.2601 2.3090 9 6 6.9143 3.0873 3.3109 10 1 7.2641 2.0550 3.2967 11 6 6.3606 3.4205 4.6990 12 6 5.9263 4.8885 4.7277 13 6 7.1203 5.7758 4.3687 14 1 7.9151 5.6286 5.1000 15 6 6.6859 7.2428 4.3765 16 7 7.6129 5.4185 3.0322 17 6 8.6701 6.3409 2.5968 18 6 9.8659 6.1980 3.5027 19 8 9.8041 5.4827 4.4803 20 7 11.0041 6.8649 3.2265 21 6 12.0922 6.7344 4.0504 22 1 12.0374 6.0969 4.9205 23 6 13.2654 7.4223 3.7660 24 7 14.3085 7.2969 4.5553 25 14 13.3600 8.5255 2.2615 26 1 13.8343 7.7351 1.0972 27 1 12.0137 9.0794 1.9684 28 1 14.3072 9.6389 2.5229 29 6 8.0798 4.0269 2.9929 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3855 2.1161 0.2658 34 1 2.4756 1.4866 -0.9927 35 1 3.2688 3.2697 1.3191 36 1 4.3587 2.6396 0.0607 37 1 5.7836 4.0967 1.8239 38 1 7.1339 3.2547 5.4490 39 1 5.5030 2.7826 4.9128 40 1 5.5707 5.1433 5.7260 41 1 5.1256 5.0459 4.0051 42 1 5.9801 7.4171 3.5643 43 1 6.2089 7.4754 5.3287 44 1 7.5592 7.8812 4.2422 45 1 8.3001 7.3652 2.6425 46 1 8.9596 6.1045 1.5729 47 1 11.0534 7.4371 2.4449 48 1 15.1277 7.7769 4.3566 49 1 8.4671 3.8017 1.9992 50 1 8.8700 3.8878 3.7306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131947671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:54 Heat of formation + Delta-G solvation = -83.713066 kcal Electronic energy + Delta-G solvation = -30173.537156 eV Core-core repulsion = 26008.830394 eV Total energy + Delta-G solvation = -4164.706762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41539 -39.41314 -38.14376 -37.35734 -34.77737 -34.18200 -33.96883 -32.59547 -31.77417 -31.43361 -28.58013 -27.78166 -26.46127 -25.61559 -24.51640 -22.78646 -21.54127 -20.84724 -20.29580 -19.55669 -19.22814 -18.16533 -17.53962 -17.04458 -16.64875 -16.03803 -15.85090 -15.60157 -15.30459 -15.02881 -14.83621 -14.71228 -14.39562 -13.83977 -13.81969 -13.61151 -13.45529 -13.12275 -12.87699 -12.66865 -12.50621 -12.44037 -12.28088 -11.95697 -11.81104 -11.77322 -11.47481 -11.37344 -11.33628 -11.07534 -10.67218 -10.57683 -10.42848 -10.33225 -10.09048 -10.00370 -9.81471 -9.68883 -9.57375 -9.40663 -8.96652 -8.26759 -7.59398 -6.40809 -3.92339 1.73636 2.59574 2.79669 2.95178 2.99854 3.08943 3.58501 3.81704 4.01631 4.13768 4.54569 4.58218 4.68549 4.73615 4.84233 4.86407 4.93160 4.97426 5.00956 5.09723 5.10491 5.16585 5.26077 5.46210 5.52437 5.64477 5.67331 5.69939 5.80309 5.81742 5.88350 5.98916 6.02678 6.12012 6.16997 6.18612 6.22488 6.26373 6.32521 6.37747 6.57586 6.70688 6.75922 7.18163 7.32811 7.46636 7.58450 8.05233 8.25242 8.47558 8.84699 9.32227 9.69985 10.71878 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002115 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.620608 B =13233.602662 C =13539.172566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.526 6.526 8 N -0.709 5.709 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.060 3.940 14 H 0.087 0.913 15 C -0.144 4.144 16 N -0.510 5.510 17 C 0.034 3.966 18 C 0.415 3.585 19 O -0.576 6.576 20 N -0.583 5.583 21 C -0.308 4.308 22 H 0.119 0.881 23 C 0.043 3.957 24 N -0.877 5.877 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.276 1.276 29 C 0.030 3.970 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.072 0.928 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.284 -3.872 -11.055 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.036 4.036 6 C 0.295 3.705 7 O -0.402 6.402 8 N -0.363 5.363 9 C 0.052 3.948 10 H 0.106 0.894 11 C -0.170 4.170 12 C -0.141 4.141 13 C -0.048 4.048 14 H 0.104 0.896 15 C -0.201 4.201 16 N -0.233 5.233 17 C -0.097 4.097 18 C 0.201 3.799 19 O -0.461 6.461 20 N -0.220 5.220 21 C -0.437 4.437 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.516 5.516 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.201 1.201 29 C -0.099 4.099 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.242 0.758 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.204 0.796 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.378 -5.178 -10.116 25.994 hybrid contribution 0.954 1.631 -1.063 2.168 sum -22.424 -3.547 -11.179 25.306 Atomic orbital electron populations 1.23838 0.95505 1.02316 1.00129 1.22726 0.95617 0.98234 1.00125 1.21612 0.88821 0.96175 0.92411 1.88048 1.44260 1.35085 1.60374 1.22222 0.93348 0.89113 0.98926 1.20185 0.82554 0.84209 0.83591 1.90726 1.72084 1.27213 1.50166 1.45917 1.31487 1.17144 1.41737 1.21017 0.86643 0.99737 0.87368 0.89363 1.21940 1.01452 0.96805 0.96776 1.21535 0.97568 0.94193 1.00810 1.21920 0.97366 0.94176 0.91327 0.89561 1.21866 1.01126 0.95783 1.01366 1.62434 1.32405 1.02073 1.26425 1.22158 0.90175 0.98699 0.98708 1.21009 0.85002 0.85038 0.88855 1.90447 1.83030 1.42086 1.30516 1.42408 1.12435 1.41883 1.25319 1.19447 0.88456 1.27700 1.08138 0.86329 1.25077 0.95340 0.97796 0.97849 1.69620 1.02912 1.41982 1.37112 0.86672 0.78536 0.81095 0.83097 1.19554 1.19425 1.20112 1.22620 0.96478 0.87658 1.03098 0.87715 0.88420 0.86400 0.92583 0.92093 0.90336 0.90288 0.75766 0.90768 0.91763 0.91993 0.92040 0.92515 0.92605 0.92663 0.88652 0.89439 0.79637 0.91501 0.91000 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 14.31 29.01 0.42 -0.70 16 2 C -0.15 -1.16 9.89 -36.03 -0.36 -1.52 16 3 C 0.09 0.67 6.35 36.00 0.23 0.90 16 4 O -0.36 -4.12 9.86 -55.14 -0.54 -4.66 16 5 C 0.04 0.40 6.42 36.00 0.23 0.63 16 6 C 0.51 6.39 7.87 -10.98 -0.09 6.31 16 7 O -0.53 -9.06 16.16 -14.35 -0.23 -9.29 16 8 N -0.71 -7.84 4.41 -53.73 -0.24 -8.08 16 9 C 0.16 2.08 2.81 -67.85 -0.19 1.89 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 C -0.13 -1.75 5.67 -26.61 -0.15 -1.90 16 12 C -0.10 -1.27 5.20 -26.65 -0.14 -1.41 16 13 C 0.06 0.85 2.05 -67.72 -0.14 0.71 16 14 H 0.09 1.59 5.69 -51.93 -0.30 1.29 16 15 C -0.14 -1.80 8.52 37.16 0.32 -1.48 16 16 N -0.51 -6.90 4.17 -228.13 -0.95 -7.85 16 17 C 0.03 0.51 5.45 -4.98 -0.03 0.48 16 18 C 0.41 8.49 7.18 -10.99 -0.08 8.41 16 19 O -0.58 -13.67 11.22 5.55 0.06 -13.61 16 20 N -0.58 -13.00 5.09 -10.96 -0.06 -13.06 16 21 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 22 H 0.12 3.71 7.39 -52.48 -0.39 3.32 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -24.99 13.96 55.50 0.77 -24.21 16 25 Si 0.88 18.69 27.74 -169.99 -4.71 13.98 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 28 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 29 C 0.03 0.43 4.59 -3.83 -0.02 0.41 16 30 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 31 H 0.10 0.49 7.90 -52.49 -0.41 0.08 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.06 0.35 7.86 -51.93 -0.41 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.41 3.73 8.17 -40.82 -0.33 3.40 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.05 0.76 6.65 -51.93 -0.35 0.41 16 45 H 0.10 1.26 6.10 -51.93 -0.32 0.94 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 48 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 50 H 0.09 1.67 5.68 -51.93 -0.29 1.38 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -33.11 397.63 -8.21 -41.33 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -8.07 Total: 14.22 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.24 Total: 5.25 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.47 Total: -53.21 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.71 Total: -27.56 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.11 -8.21 -41.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131947671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.385 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds