Wall clock time and date at job start Tue Mar 31 2020 23:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00049 * 2 1 4 4 O 1.42893 * 109.47571 * 134.99601 * 3 2 1 5 5 C 1.42900 * 114.00195 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46955 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00607 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99891 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99987 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.50285 * 35.08337 * 9 8 6 11 11 C 1.53113 * 109.50661 * 275.00307 * 9 8 6 12 12 C 1.53124 * 109.15980 * 297.71475 * 11 9 8 13 13 C 1.53029 * 109.27686 * 302.34217 * 12 11 9 14 14 H 1.08996 * 109.46730 * 299.16466 * 13 12 11 15 15 C 1.53004 * 109.46411 * 179.19301 * 13 12 11 16 16 N 1.46851 * 109.52405 * 59.18085 * 13 12 11 17 17 C 1.46900 * 111.00269 * 174.15702 * 16 13 12 18 18 C 1.50698 * 109.46962 * 64.61921 * 17 16 13 19 19 O 1.21291 * 120.00041 * 354.33617 * 18 17 16 20 20 N 1.34776 * 119.99784 * 174.32936 * 18 17 16 21 21 C 1.37106 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99667 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00249 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00355 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99868 * 0.02562 * 23 21 20 26 26 H 1.48508 * 109.46846 * 269.99826 * 25 23 21 27 27 H 1.48495 * 109.47382 * 29.99705 * 25 23 21 28 28 H 1.48499 * 109.47084 * 149.99995 * 25 23 21 29 29 C 1.46843 * 111.19627 * 298.25464 * 16 13 12 30 30 H 1.07998 * 120.00060 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00085 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99544 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47283 * 14.99020 * 3 2 1 34 34 H 1.09005 * 109.46488 * 254.99358 * 3 2 1 35 35 H 1.08997 * 109.47088 * 60.00455 * 5 4 3 36 36 H 1.09000 * 109.47279 * 300.00045 * 5 4 3 37 37 H 0.97002 * 119.99854 * 0.02562 * 8 6 5 38 38 H 1.08995 * 109.52680 * 177.80864 * 11 9 8 39 39 H 1.09001 * 109.57666 * 57.65201 * 11 9 8 40 40 H 1.08996 * 109.50061 * 182.40303 * 12 11 9 41 41 H 1.08994 * 109.53379 * 62.30608 * 12 11 9 42 42 H 1.09001 * 109.47326 * 293.10342 * 15 13 12 43 43 H 1.09008 * 109.46588 * 53.10514 * 15 13 12 44 44 H 1.09001 * 109.47643 * 173.10061 * 15 13 12 45 45 H 1.09003 * 109.47260 * 304.62024 * 17 16 13 46 46 H 1.09000 * 109.47394 * 184.61896 * 17 16 13 47 47 H 0.96996 * 120.00181 * 0.02562 * 20 18 17 48 48 H 0.97004 * 120.00586 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.45988 * 181.75495 * 29 16 13 50 50 H 1.08995 * 109.46727 * 301.72223 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0320 6 6 4.9937 2.2570 2.0621 7 8 5.0889 1.2109 2.6683 8 7 5.8594 3.2601 2.3090 9 6 6.9143 3.0873 3.3109 10 1 7.2641 2.0550 3.2967 11 6 6.3606 3.4205 4.6990 12 6 5.9263 4.8885 4.7277 13 6 7.1203 5.7758 4.3687 14 1 7.9151 5.6286 5.1000 15 6 6.6859 7.2428 4.3765 16 7 7.6129 5.4185 3.0322 17 6 8.6701 6.3409 2.5968 18 6 9.8659 6.1980 3.5027 19 8 9.8041 5.4827 4.4803 20 7 11.0041 6.8649 3.2265 21 6 12.0922 6.7344 4.0504 22 1 12.0374 6.0969 4.9205 23 6 13.2654 7.4223 3.7660 24 7 14.3085 7.2969 4.5553 25 14 13.3600 8.5255 2.2615 26 1 13.8343 7.7351 1.0972 27 1 12.0137 9.0794 1.9684 28 1 14.3072 9.6389 2.5229 29 6 8.0798 4.0269 2.9929 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3855 2.1161 0.2658 34 1 2.4756 1.4866 -0.9927 35 1 3.2688 3.2697 1.3191 36 1 4.3587 2.6396 0.0607 37 1 5.7836 4.0967 1.8239 38 1 7.1339 3.2547 5.4490 39 1 5.5030 2.7826 4.9128 40 1 5.5707 5.1433 5.7260 41 1 5.1256 5.0459 4.0051 42 1 5.9801 7.4171 3.5643 43 1 6.2089 7.4754 5.3287 44 1 7.5592 7.8812 4.2422 45 1 8.3001 7.3652 2.6425 46 1 8.9596 6.1045 1.5729 47 1 11.0534 7.4371 2.4449 48 1 15.1277 7.7769 4.3566 49 1 8.4671 3.8017 1.9992 50 1 8.8700 3.8878 3.7306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131947671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:53 Heat of formation + Delta-G solvation = -109.261634 kcal Electronic energy + Delta-G solvation = -30174.645025 eV Core-core repulsion = 26008.830394 eV Total energy + Delta-G solvation = -4165.814631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61217 -40.62032 -39.22387 -38.47667 -36.19515 -35.56253 -34.73620 -33.88304 -33.64379 -32.49380 -29.36083 -29.15632 -27.49453 -26.37235 -26.12319 -24.03629 -22.62470 -21.90548 -21.26471 -20.88298 -20.57959 -19.80967 -18.40477 -17.93564 -17.56563 -17.31650 -16.99496 -16.72595 -16.53414 -16.32209 -15.99255 -15.67050 -15.56264 -15.28622 -15.12594 -14.71546 -14.59273 -14.51276 -14.11424 -13.88079 -13.77106 -13.33615 -13.13586 -13.10952 -13.00821 -12.92307 -12.82119 -12.56170 -12.42054 -12.26435 -12.00258 -11.86194 -11.75006 -11.62257 -11.33954 -11.13762 -11.00456 -10.95608 -10.78187 -10.23474 -10.21142 -10.02458 -9.03729 -8.42239 -6.02567 1.21978 1.29678 1.35027 1.44154 1.65088 1.93545 1.98241 2.22443 2.89860 2.99409 3.15160 3.17433 3.72848 3.83205 3.87381 4.02602 4.08615 4.10766 4.20540 4.25950 4.29888 4.34923 4.41048 4.49376 4.50729 4.57912 4.63100 4.63929 4.69765 4.78591 4.89786 4.94385 5.00239 5.01107 5.06007 5.12918 5.20639 5.29138 5.47862 5.52850 5.59550 5.67961 5.72282 5.91951 6.01186 6.10967 6.14714 6.57683 6.70401 6.88914 7.34287 7.39964 7.96894 8.75358 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002115 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.620608 B =13233.602662 C =13539.172566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.399 6.399 5 C 0.048 3.952 6 C 0.506 3.494 7 O -0.582 6.582 8 N -0.692 5.692 9 C 0.165 3.835 10 H 0.068 0.932 11 C -0.128 4.128 12 C -0.093 4.093 13 C 0.059 3.941 14 H 0.037 0.963 15 C -0.138 4.138 16 N -0.484 5.484 17 C 0.042 3.958 18 C 0.418 3.582 19 O -0.612 6.612 20 N -0.589 5.589 21 C -0.326 4.326 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.227 1.227 28 H -0.278 1.278 29 C 0.037 3.963 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.422 0.578 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.086 0.914 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.657 -1.223 -15.094 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.318 6.318 5 C -0.031 4.031 6 C 0.294 3.706 7 O -0.461 6.461 8 N -0.346 5.346 9 C 0.060 3.940 10 H 0.086 0.914 11 C -0.167 4.167 12 C -0.131 4.131 13 C -0.050 4.050 14 H 0.055 0.945 15 C -0.196 4.196 16 N -0.207 5.207 17 C -0.089 4.089 18 C 0.206 3.794 19 O -0.498 6.498 20 N -0.230 5.230 21 C -0.456 4.456 22 H 0.070 0.930 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.150 1.150 28 H -0.204 1.204 29 C -0.092 4.092 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.225 0.775 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.801 -2.506 -14.181 30.425 hybrid contribution 1.903 0.641 0.335 2.036 sum -24.898 -1.865 -13.846 28.550 Atomic orbital electron populations 1.24052 0.95017 1.03485 0.97895 1.22806 0.96357 0.98174 1.02275 1.21784 0.88344 0.96496 0.92503 1.88002 1.45504 1.36574 1.61729 1.22326 0.92578 0.89300 0.98895 1.20957 0.82936 0.83214 0.83543 1.90709 1.73592 1.29432 1.52407 1.45692 1.30396 1.17646 1.40881 1.20689 0.87052 0.98287 0.88009 0.91427 1.21880 1.00516 0.97973 0.96361 1.21474 0.97234 0.92428 1.01936 1.21885 0.96609 0.96279 0.90202 0.94515 1.21831 1.01233 0.93468 1.03057 1.62540 1.31078 1.01310 1.25775 1.22393 0.87217 1.00680 0.98656 1.22387 0.85855 0.82621 0.88578 1.90487 1.83858 1.43006 1.32467 1.42250 1.11720 1.43413 1.25637 1.18984 0.91075 1.27855 1.07666 0.92961 1.26146 0.94010 0.99355 1.02004 1.69813 1.03944 1.43807 1.40092 0.85374 0.80534 0.78137 0.77534 1.18287 1.15005 1.20356 1.22458 0.95746 0.88561 1.02395 0.86919 0.86875 0.87834 0.90718 0.90509 0.87106 0.87171 0.74014 0.93099 0.92154 0.91373 0.89644 0.89559 0.91895 0.93948 0.85602 0.85868 0.77533 0.91266 0.89564 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 14.31 67.78 0.97 -0.77 16 2 C -0.18 -2.56 9.89 25.65 0.25 -2.31 16 3 C 0.08 1.10 6.35 71.23 0.45 1.55 16 4 O -0.40 -8.41 9.86 -129.94 -1.28 -9.69 16 5 C 0.05 0.71 6.42 71.23 0.46 1.16 16 6 C 0.51 11.86 7.87 87.66 0.69 12.55 16 7 O -0.58 -20.25 16.16 16.01 0.26 -19.99 16 8 N -0.69 -13.73 4.41 -442.28 -1.95 -15.68 16 9 C 0.17 4.37 2.81 45.04 0.13 4.50 16 10 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 11 C -0.13 -3.51 5.67 30.67 0.17 -3.34 16 12 C -0.09 -2.15 5.20 30.65 0.16 -1.99 16 13 C 0.06 1.58 2.05 44.94 0.09 1.68 16 14 H 0.04 1.40 5.69 -2.39 -0.01 1.39 16 15 C -0.14 -3.02 8.52 71.98 0.61 -2.41 16 16 N -0.48 -11.94 4.17 -875.66 -3.65 -15.59 16 17 C 0.04 1.10 5.45 85.56 0.47 1.56 16 18 C 0.42 17.07 7.18 87.66 0.63 17.70 16 19 O -0.61 -30.73 11.22 -3.06 -0.03 -30.76 16 20 N -0.59 -26.11 5.09 -306.98 -1.56 -27.68 16 21 C -0.33 -18.54 10.16 84.04 0.85 -17.69 16 22 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 24 N -0.94 -55.93 13.96 21.66 0.30 -55.63 16 25 Si 0.96 37.65 27.74 68.60 1.90 39.55 16 26 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 27 H -0.23 -7.26 6.52 99.48 0.65 -6.61 16 28 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 29 C 0.04 1.05 4.59 86.33 0.40 1.45 16 30 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.11 0.81 7.90 -2.91 -0.02 0.78 16 32 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.07 0.66 7.86 -2.39 -0.02 0.65 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.42 5.95 8.17 -92.71 -0.76 5.19 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.61 7.73 -2.39 -0.02 1.59 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.04 1.04 6.65 -2.39 -0.02 1.02 16 45 H 0.13 2.69 6.10 -2.39 -0.01 2.67 16 46 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.39 14.17 5.76 -92.71 -0.53 13.63 16 48 H 0.28 15.23 8.31 -92.71 -0.77 14.45 16 49 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 50 H 0.05 1.82 5.68 -2.39 -0.01 1.81 16 Total: -1.00 -82.38 397.63 0.39 -81.99 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.40 Total: 40.28 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.80 Total: 13.20 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -6.86 Total: -114.58 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -1.06 Total: -60.44 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.55 kcal Total: -82.38 0.39 -81.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131947671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.274 kcal (2) G-P(sol) polarization free energy of solvation -82.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds