Wall clock time and date at job start Tue Mar 31 2020 23:03:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30995 * 1
3 3 C 1.50706 * 119.99318 * 2 1
4 4 O 1.42906 * 109.46788 * 135.00074 * 3 2 1
5 5 C 1.42900 * 114.00187 * 179.97438 * 4 3 2
6 6 C 1.50692 * 109.47332 * 179.97438 * 5 4 3
7 7 O 1.21278 * 120.00173 * 0.02562 * 6 5 4
8 8 N 1.34777 * 120.00168 * 180.02562 * 6 5 4
9 9 C 1.46493 * 120.00285 * 180.02562 * 8 6 5
10 10 H 1.09004 * 109.54003 * 325.10270 * 9 8 6
11 11 C 1.53124 * 109.50557 * 85.19511 * 9 8 6
12 12 C 1.53116 * 109.16191 * 177.59533 * 11 9 8
13 13 C 1.53037 * 109.28156 * 302.34749 * 12 11 9
14 14 H 1.09003 * 109.46363 * 299.16329 * 13 12 11
15 15 C 1.52996 * 109.46439 * 179.19770 * 13 12 11
16 16 N 1.46849 * 109.52439 * 59.17735 * 13 12 11
17 17 C 1.46899 * 111.00415 * 174.16221 * 16 13 12
18 18 C 1.50699 * 109.47033 * 199.79027 * 17 16 13
19 19 O 1.21284 * 120.00347 * 359.97438 * 18 17 16
20 20 N 1.34779 * 119.99322 * 179.72533 * 18 17 16
21 21 C 1.37105 * 119.99638 * 180.27275 * 20 18 17
22 22 H 1.07998 * 119.99519 * 359.97438 * 21 20 18
23 23 C 1.38946 * 120.00210 * 179.97438 * 21 20 18
24 24 N 1.31413 * 120.00322 * 180.02562 * 23 21 20
25 25 Si 1.86799 * 119.99834 * 0.02562 * 23 21 20
26 26 H 1.48504 * 109.47225 * 89.99551 * 25 23 21
27 27 H 1.48496 * 109.47213 * 209.99927 * 25 23 21
28 28 H 1.48504 * 109.47005 * 329.99830 * 25 23 21
29 29 C 1.46849 * 111.19783 * 298.26441 * 16 13 12
30 30 H 1.08002 * 119.99808 * 180.02562 * 1 2 3
31 31 H 1.08003 * 120.00583 * 359.97438 * 1 2 3
32 32 H 1.07994 * 120.00659 * 180.02562 * 2 1 3
33 33 H 1.08997 * 109.47468 * 15.00370 * 3 2 1
34 34 H 1.09002 * 109.47050 * 254.99656 * 3 2 1
35 35 H 1.09004 * 109.46743 * 60.00149 * 5 4 3
36 36 H 1.09001 * 109.47036 * 300.00395 * 5 4 3
37 37 H 0.97003 * 119.99701 * 0.02562 * 8 6 5
38 38 H 1.08996 * 109.52370 * 297.50782 * 11 9 8
39 39 H 1.09005 * 109.51848 * 57.63261 * 11 9 8
40 40 H 1.09003 * 109.50385 * 62.29090 * 12 11 9
41 41 H 1.09005 * 109.50329 * 182.36934 * 12 11 9
42 42 H 1.09002 * 109.46846 * 292.18409 * 15 13 12
43 43 H 1.08994 * 109.47401 * 52.18629 * 15 13 12
44 44 H 1.09001 * 109.47233 * 172.19366 * 15 13 12
45 45 H 1.08993 * 109.47259 * 79.78326 * 17 16 13
46 46 H 1.09002 * 109.46715 * 319.78850 * 17 16 13
47 47 H 0.96997 * 120.00704 * 0.26894 * 20 18 17
48 48 H 0.96996 * 120.00114 * 180.02562 * 24 23 21
49 49 H 1.09002 * 109.45961 * 181.75775 * 29 16 13
50 50 H 1.09002 * 109.46199 * 301.72691 * 29 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0633 1.3052 0.0000
4 8 3.1266 1.2415 0.9527
5 6 3.9082 2.4351 1.0322
6 6 4.9937 2.2571 2.0622
7 8 5.0889 1.2110 2.6683
8 7 5.8587 3.2605 2.3099
9 6 6.9143 3.0874 3.3108
10 1 6.5431 2.4701 4.1290
11 6 8.1243 2.4064 2.6652
12 6 9.2444 2.2836 3.7019
13 6 9.5966 3.6752 4.2326
14 1 9.9442 4.3003 3.4100
15 6 10.7018 3.5553 5.2837
16 7 8.4068 4.2841 4.8408
17 6 8.7398 5.5624 5.4836
18 6 7.6692 5.9156 6.4837
19 8 6.7219 5.1757 6.6448
20 7 7.7672 7.0514 7.2027
21 6 6.7962 7.3701 8.1166
22 1 5.9526 6.7111 8.2600
23 6 6.8973 8.5407 8.8582
24 7 5.9668 8.8459 9.7346
25 14 8.3561 9.6807 8.6096
26 1 8.0348 10.6723 7.5518
27 1 8.6519 10.3904 9.8800
28 1 9.5413 8.8856 8.1991
29 6 7.3340 4.4556 3.8528
30 1 -0.5400 -0.9353 0.0004
31 1 -0.5401 0.9353 0.0004
32 1 1.8500 -0.9352 -0.0004
33 1 1.3853 2.1162 0.2660
34 1 2.4754 1.4869 -0.9927
35 1 3.2686 3.2697 1.3194
36 1 4.3585 2.6399 0.0609
37 1 5.7823 4.0974 1.8255
38 1 7.8404 1.4136 2.3163
39 1 8.4712 3.0035 1.8218
40 1 8.9098 1.6538 4.5263
41 1 10.1235 1.8377 3.2368
42 1 10.3107 3.0487 6.1660
43 1 11.5327 2.9813 4.8735
44 1 11.0494 4.5506 5.5606
45 1 8.8023 6.3442 4.7268
46 1 9.6988 5.4734 5.9940
47 1 8.5247 7.6434 7.0736
48 1 6.0373 9.6633 10.2520
49 1 6.4781 4.9370 4.3259
50 1 7.6922 5.0769 3.0319
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001131947672.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:57
Heat of formation + Delta-G solvation = -81.763143 kcal
Electronic energy + Delta-G solvation = -29619.703557 eV
Core-core repulsion = 25455.081350 eV
Total energy + Delta-G solvation = -4164.622207 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.28056 -39.27930 -38.11614 -37.61662 -35.05494 -34.15738 -33.97952 -32.75596
-31.66052 -31.51322 -28.74059 -27.84076 -26.44710 -25.50546 -24.48382 -22.96862
-21.63554 -20.68007 -20.28908 -19.75571 -19.29439 -18.25862 -17.52149 -17.18778
-16.66498 -16.15444 -15.95058 -15.51104 -15.19727 -15.14515 -14.85596 -14.49308
-14.34487 -14.09001 -13.93446 -13.57239 -13.45937 -13.25354 -12.98892 -12.60840
-12.52466 -12.48681 -12.39091 -12.21549 -11.93624 -11.89718 -11.53471 -11.33246
-11.18869 -10.99768 -10.91622 -10.71175 -10.59315 -10.36641 -10.30749 -9.96043
-9.83208 -9.66643 -9.53326 -9.10717 -8.59109 -8.15841 -7.96957 -6.29136
-3.80380 1.76765 2.53338 2.67131 3.02547 3.06201 3.15004 3.66858
3.77760 3.95640 4.11171 4.47625 4.65587 4.70784 4.72855 4.78895
4.81846 4.83583 4.87623 4.91980 4.98893 5.05249 5.14503 5.22265
5.27765 5.40237 5.46237 5.49997 5.51800 5.53738 5.64359 5.78488
5.85026 5.94018 5.95107 5.99299 6.10348 6.19313 6.20070 6.20859
6.25916 6.35713 6.42522 6.72819 7.13067 7.28727 7.40156 7.60819
8.15476 8.17026 8.62927 8.98028 9.44919 9.87053 10.84158
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.011456 B = 0.002362 C = 0.002026
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2443.562524 B =11850.125997 C =13817.497242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.151 4.151
3 C 0.086 3.914
4 O -0.359 6.359
5 C 0.044 3.956
6 C 0.515 3.485
7 O -0.515 6.515
8 N -0.723 5.723
9 C 0.152 3.848
10 H 0.102 0.898
11 C -0.129 4.129
12 C -0.107 4.107
13 C 0.079 3.921
14 H 0.038 0.962
15 C -0.151 4.151
16 N -0.505 5.505
17 C 0.038 3.962
18 C 0.453 3.547
19 O -0.555 6.555
20 N -0.594 5.594
21 C -0.302 4.302
22 H 0.119 0.881
23 C 0.040 3.960
24 N -0.883 5.883
25 Si 0.879 3.121
26 H -0.272 1.272
27 H -0.277 1.277
28 H -0.270 1.270
29 C 0.056 3.944
30 H 0.105 0.895
31 H 0.098 0.902
32 H 0.118 0.882
33 H 0.057 0.943
34 H 0.060 0.940
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.398 0.602
38 H 0.068 0.932
39 H 0.058 0.942
40 H 0.077 0.923
41 H 0.069 0.931
42 H 0.070 0.930
43 H 0.059 0.941
44 H 0.057 0.943
45 H 0.050 0.950
46 H 0.098 0.902
47 H 0.369 0.631
48 H 0.273 0.727
49 H 0.097 0.903
50 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.703 -9.491 -22.915 24.949
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.169 4.169
3 C 0.010 3.990
4 O -0.277 6.277
5 C -0.036 4.036
6 C 0.300 3.700
7 O -0.389 6.389
8 N -0.376 5.376
9 C 0.048 3.952
10 H 0.120 0.880
11 C -0.167 4.167
12 C -0.146 4.146
13 C -0.029 4.029
14 H 0.056 0.944
15 C -0.208 4.208
16 N -0.230 5.230
17 C -0.093 4.093
18 C 0.238 3.762
19 O -0.436 6.436
20 N -0.235 5.235
21 C -0.431 4.431
22 H 0.137 0.863
23 C -0.163 4.163
24 N -0.523 5.523
25 Si 0.706 3.294
26 H -0.198 1.198
27 H -0.202 1.202
28 H -0.195 1.195
29 C -0.072 4.072
30 H 0.123 0.877
31 H 0.116 0.884
32 H 0.136 0.864
33 H 0.076 0.924
34 H 0.078 0.922
35 H 0.100 0.900
36 H 0.097 0.903
37 H 0.232 0.768
38 H 0.087 0.913
39 H 0.077 0.923
40 H 0.095 0.905
41 H 0.087 0.913
42 H 0.089 0.911
43 H 0.078 0.922
44 H 0.076 0.924
45 H 0.068 0.932
46 H 0.115 0.885
47 H 0.202 0.798
48 H 0.083 0.917
49 H 0.115 0.885
50 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 1.886 -11.120 -21.708 24.463
hybrid contribution 1.303 2.412 -1.084 2.948
sum 3.190 -8.707 -22.792 24.606
Atomic orbital electron populations
1.23852 0.95510 1.02381 0.99849 1.22706 0.95627 0.98155 1.00369
1.21626 0.88800 0.96335 0.92233 1.88056 1.44284 1.34862 1.60496
1.22208 0.93355 0.89457 0.98571 1.20146 0.82068 0.84149 0.83653
1.90749 1.71988 1.26861 1.49257 1.45844 1.32148 1.17184 1.42454
1.20946 0.86354 0.97342 0.90599 0.87976 1.21974 0.95355 1.01232
0.98186 1.21567 0.97771 0.96440 0.98774 1.21689 0.90300 0.95494
0.95417 0.94445 1.21958 0.97218 1.01970 0.99688 1.61313 1.07139
1.24165 1.30400 1.22014 0.99690 0.90323 0.97308 1.19700 0.88605
0.82970 0.84920 1.90569 1.34088 1.50215 1.68701 1.42223 1.23309
1.20646 1.37278 1.19418 1.03038 1.06763 1.13862 0.86316 1.25034
0.97518 0.97334 0.96393 1.69622 1.33334 1.25374 1.23985 0.86679
0.82456 0.81512 0.78755 1.19760 1.20236 1.19520 1.22264 0.96513
0.95146 0.93304 0.87681 0.88361 0.86413 0.92449 0.92155 0.90020
0.90302 0.76827 0.91318 0.92318 0.90462 0.91286 0.91099 0.92173
0.92437 0.93249 0.88451 0.79849 0.91681 0.88507 0.95321
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.23 14.31 29.02 0.42 -0.81 16
2 C -0.15 -1.25 9.89 -36.02 -0.36 -1.61 16
3 C 0.09 0.71 6.35 36.01 0.23 0.94 16
4 O -0.36 -4.29 9.86 -55.14 -0.54 -4.83 16
5 C 0.04 0.41 6.42 36.00 0.23 0.64 16
6 C 0.52 6.72 7.87 -10.99 -0.09 6.64 16
7 O -0.51 -9.27 16.16 -14.35 -0.23 -9.50 16
8 N -0.72 -8.04 5.08 -53.73 -0.27 -8.32 16
9 C 0.15 2.04 2.62 -67.85 -0.18 1.87 16
10 H 0.10 1.77 7.58 -51.93 -0.39 1.38 16
11 C -0.13 -1.47 5.58 -26.61 -0.15 -1.62 16
12 C -0.11 -1.20 5.37 -26.65 -0.14 -1.34 16
13 C 0.08 0.94 2.44 -67.72 -0.17 0.78 16
14 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
15 C -0.15 -1.65 8.59 37.16 0.32 -1.33 16
16 N -0.51 -7.75 4.05 -228.12 -0.92 -8.67 16
17 C 0.04 0.61 5.31 -4.98 -0.03 0.59 16
18 C 0.45 10.10 7.49 -10.98 -0.08 10.02 16
19 O -0.55 -14.73 14.74 5.55 0.08 -14.65 16
20 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16
21 C -0.30 -8.49 10.16 -14.93 -0.15 -8.65 16
22 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16
23 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16
24 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16
25 Si 0.88 19.24 27.74 -169.99 -4.71 14.52 16
26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
28 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16
29 C 0.06 0.80 4.58 -3.83 -0.02 0.79 16
30 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16
31 H 0.10 0.58 7.90 -52.48 -0.41 0.16 16
32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
33 H 0.06 0.40 7.86 -51.93 -0.41 -0.01 16
34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.40 3.10 8.60 -40.82 -0.35 2.75 16
38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
43 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16
44 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16
45 H 0.05 0.70 8.00 -51.93 -0.42 0.28 16
46 H 0.10 1.40 5.42 -51.93 -0.28 1.12 16
47 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16
48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
49 H 0.10 1.70 6.69 -51.93 -0.35 1.35 16
50 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16
LS Contribution 405.46 15.07 6.11 6.11
Total: -1.00 -36.43 405.46 -8.27 -44.69
By element:
Atomic # 1 Polarization: 20.04 SS G_CDS: -8.23 Total: 11.81 kcal
Atomic # 6 Polarization: 8.15 SS G_CDS: -0.26 Total: 7.89 kcal
Atomic # 7 Polarization: -55.57 SS G_CDS: -0.48 Total: -56.05 kcal
Atomic # 8 Polarization: -28.29 SS G_CDS: -0.69 Total: -28.98 kcal
Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -36.43 -8.27 -44.69 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131947672.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.071 kcal
(2) G-P(sol) polarization free energy of solvation -36.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds