Wall clock time and date at job start Tue Mar 31 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99318 * 2 1 4 4 O 1.42906 * 109.46788 * 135.00074 * 3 2 1 5 5 C 1.42900 * 114.00187 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47332 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00173 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00168 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00285 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.54003 * 325.10270 * 9 8 6 11 11 C 1.53124 * 109.50557 * 85.19511 * 9 8 6 12 12 C 1.53116 * 109.16191 * 177.59533 * 11 9 8 13 13 C 1.53037 * 109.28156 * 302.34749 * 12 11 9 14 14 H 1.09003 * 109.46363 * 299.16329 * 13 12 11 15 15 C 1.52996 * 109.46439 * 179.19770 * 13 12 11 16 16 N 1.46849 * 109.52439 * 59.17735 * 13 12 11 17 17 C 1.46899 * 111.00415 * 174.16221 * 16 13 12 18 18 C 1.50699 * 109.47033 * 199.79027 * 17 16 13 19 19 O 1.21284 * 120.00347 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99322 * 179.72533 * 18 17 16 21 21 C 1.37105 * 119.99638 * 180.27275 * 20 18 17 22 22 H 1.07998 * 119.99519 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00210 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00322 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99834 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47225 * 89.99551 * 25 23 21 27 27 H 1.48496 * 109.47213 * 209.99927 * 25 23 21 28 28 H 1.48504 * 109.47005 * 329.99830 * 25 23 21 29 29 C 1.46849 * 111.19783 * 298.26441 * 16 13 12 30 30 H 1.08002 * 119.99808 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00583 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00659 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47468 * 15.00370 * 3 2 1 34 34 H 1.09002 * 109.47050 * 254.99656 * 3 2 1 35 35 H 1.09004 * 109.46743 * 60.00149 * 5 4 3 36 36 H 1.09001 * 109.47036 * 300.00395 * 5 4 3 37 37 H 0.97003 * 119.99701 * 0.02562 * 8 6 5 38 38 H 1.08996 * 109.52370 * 297.50782 * 11 9 8 39 39 H 1.09005 * 109.51848 * 57.63261 * 11 9 8 40 40 H 1.09003 * 109.50385 * 62.29090 * 12 11 9 41 41 H 1.09005 * 109.50329 * 182.36934 * 12 11 9 42 42 H 1.09002 * 109.46846 * 292.18409 * 15 13 12 43 43 H 1.08994 * 109.47401 * 52.18629 * 15 13 12 44 44 H 1.09001 * 109.47233 * 172.19366 * 15 13 12 45 45 H 1.08993 * 109.47259 * 79.78326 * 17 16 13 46 46 H 1.09002 * 109.46715 * 319.78850 * 17 16 13 47 47 H 0.96997 * 120.00704 * 0.26894 * 20 18 17 48 48 H 0.96996 * 120.00114 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.45961 * 181.75775 * 29 16 13 50 50 H 1.09002 * 109.46199 * 301.72691 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9082 2.4351 1.0322 6 6 4.9937 2.2571 2.0622 7 8 5.0889 1.2110 2.6683 8 7 5.8587 3.2605 2.3099 9 6 6.9143 3.0874 3.3108 10 1 6.5431 2.4701 4.1290 11 6 8.1243 2.4064 2.6652 12 6 9.2444 2.2836 3.7019 13 6 9.5966 3.6752 4.2326 14 1 9.9442 4.3003 3.4100 15 6 10.7018 3.5553 5.2837 16 7 8.4068 4.2841 4.8408 17 6 8.7398 5.5624 5.4836 18 6 7.6692 5.9156 6.4837 19 8 6.7219 5.1757 6.6448 20 7 7.7672 7.0514 7.2027 21 6 6.7962 7.3701 8.1166 22 1 5.9526 6.7111 8.2600 23 6 6.8973 8.5407 8.8582 24 7 5.9668 8.8459 9.7346 25 14 8.3561 9.6807 8.6096 26 1 8.0348 10.6723 7.5518 27 1 8.6519 10.3904 9.8800 28 1 9.5413 8.8856 8.1991 29 6 7.3340 4.4556 3.8528 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3853 2.1162 0.2660 34 1 2.4754 1.4869 -0.9927 35 1 3.2686 3.2697 1.3194 36 1 4.3585 2.6399 0.0609 37 1 5.7823 4.0974 1.8255 38 1 7.8404 1.4136 2.3163 39 1 8.4712 3.0035 1.8218 40 1 8.9098 1.6538 4.5263 41 1 10.1235 1.8377 3.2368 42 1 10.3107 3.0487 6.1660 43 1 11.5327 2.9813 4.8735 44 1 11.0494 4.5506 5.5606 45 1 8.8023 6.3442 4.7268 46 1 9.6988 5.4734 5.9940 47 1 8.5247 7.6434 7.0736 48 1 6.0373 9.6633 10.2520 49 1 6.4781 4.9370 4.3259 50 1 7.6922 5.0769 3.0319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131947672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:56 Heat of formation + Delta-G solvation = -111.047146 kcal Electronic energy + Delta-G solvation = -29620.973407 eV Core-core repulsion = 25455.081350 eV Total energy + Delta-G solvation = -4165.892057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36046 -40.53689 -39.44813 -38.66429 -36.20714 -35.90757 -34.78527 -33.92796 -33.66253 -32.52645 -29.53242 -29.23911 -27.39485 -26.42422 -26.02414 -24.18725 -22.61878 -21.70745 -21.20721 -20.99783 -20.68215 -20.12549 -18.41322 -18.08072 -17.72103 -17.40116 -17.02856 -16.72945 -16.53580 -16.20637 -16.11338 -15.63192 -15.41746 -15.34102 -15.04945 -14.90610 -14.64638 -14.56041 -14.14248 -14.06860 -13.86810 -13.46142 -13.28789 -13.20744 -13.09475 -13.00363 -12.77038 -12.57764 -12.39735 -12.03307 -11.96260 -11.91717 -11.87180 -11.78580 -11.45027 -11.35549 -11.00767 -10.86250 -10.39309 -10.27963 -10.21741 -10.11754 -9.15142 -8.38940 -5.99618 1.16916 1.31098 1.36908 1.45983 1.53098 1.80664 2.01247 2.24910 2.62107 3.03613 3.17290 3.30723 3.61043 3.77738 3.83338 3.94173 4.03881 4.04763 4.14592 4.22018 4.23371 4.26264 4.27314 4.39391 4.43719 4.45703 4.47869 4.59087 4.59774 4.62566 4.85097 4.86049 4.96345 4.99634 5.04847 5.09004 5.19779 5.30439 5.37472 5.49045 5.56147 5.64196 5.68084 5.93403 6.06174 6.06392 6.27398 6.52351 6.63365 6.92295 7.20940 7.43958 8.03133 8.79051 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.002362 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.562524 B =11850.125997 C =13817.497242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.178 4.178 3 C 0.083 3.917 4 O -0.399 6.399 5 C 0.048 3.952 6 C 0.507 3.493 7 O -0.576 6.576 8 N -0.709 5.709 9 C 0.156 3.844 10 H 0.048 0.952 11 C -0.118 4.118 12 C -0.106 4.106 13 C 0.082 3.918 14 H 0.067 0.933 15 C -0.150 4.150 16 N -0.538 5.538 17 C 0.052 3.948 18 C 0.451 3.549 19 O -0.608 6.608 20 N -0.594 5.594 21 C -0.324 4.324 22 H 0.051 0.949 23 C -0.019 4.019 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.256 1.256 27 H -0.278 1.278 28 H -0.229 1.229 29 C 0.064 3.936 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.418 0.582 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.054 0.946 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 -7.377 -26.408 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.008 3.992 4 O -0.318 6.318 5 C -0.031 4.031 6 C 0.294 3.706 7 O -0.455 6.455 8 N -0.363 5.363 9 C 0.051 3.949 10 H 0.066 0.934 11 C -0.156 4.156 12 C -0.144 4.144 13 C -0.026 4.026 14 H 0.085 0.915 15 C -0.208 4.208 16 N -0.264 5.264 17 C -0.079 4.079 18 C 0.238 3.762 19 O -0.491 6.491 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.069 0.931 23 C -0.217 4.217 24 N -0.579 5.579 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.203 1.203 28 H -0.153 1.153 29 C -0.064 4.064 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.255 0.745 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.142 0.858 47 H 0.225 0.775 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.395 -8.984 -25.252 27.340 hybrid contribution 0.053 1.626 0.032 1.627 sum 5.447 -7.358 -25.221 26.831 Atomic orbital electron populations 1.24063 0.95098 1.03481 0.97880 1.22806 0.96322 0.98174 1.02270 1.21810 0.88284 0.96535 0.92564 1.88008 1.45543 1.36339 1.61954 1.22334 0.92455 0.89289 0.99005 1.20991 0.82589 0.83348 0.83652 1.90720 1.73652 1.29373 1.51746 1.45711 1.31262 1.17752 1.41557 1.20721 0.87682 0.96484 0.90027 0.93399 1.21880 0.94236 1.00613 0.98885 1.21596 0.98691 0.96171 0.97939 1.21802 0.88909 0.95499 0.96340 0.91478 1.21974 0.97548 1.02695 0.98554 1.61181 1.09059 1.24197 1.31953 1.21911 0.97536 0.91861 0.96547 1.21051 0.89031 0.81446 0.84633 1.90558 1.36741 1.51699 1.70137 1.42035 1.23054 1.21710 1.36849 1.18959 1.03134 1.06806 1.16463 0.93093 1.26153 1.01571 0.98919 0.95079 1.69818 1.36326 1.26442 1.25304 0.85338 0.78308 0.78613 0.79069 1.17998 1.20286 1.15251 1.22108 0.95153 0.95411 0.93774 0.86739 0.87109 0.87507 0.91148 0.90004 0.87738 0.86238 0.74495 0.92748 0.89271 0.93314 0.88229 0.93689 0.89564 0.91412 0.89598 0.85792 0.77534 0.91261 0.92785 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 14.31 67.79 0.97 -1.21 16 2 C -0.18 -2.94 9.89 25.65 0.25 -2.69 16 3 C 0.08 1.29 6.35 71.24 0.45 1.74 16 4 O -0.40 -9.52 9.86 -129.94 -1.28 -10.80 16 5 C 0.05 0.84 6.42 71.23 0.46 1.30 16 6 C 0.51 13.53 7.87 87.65 0.69 14.22 16 7 O -0.58 -22.26 16.16 16.01 0.26 -22.00 16 8 N -0.71 -15.52 5.08 -442.30 -2.25 -17.77 16 9 C 0.16 4.28 2.62 45.05 0.12 4.39 16 10 H 0.05 1.83 7.58 -2.39 -0.02 1.82 16 11 C -0.12 -2.51 5.58 30.67 0.17 -2.34 16 12 C -0.11 -2.16 5.37 30.65 0.16 -2.00 16 13 C 0.08 1.67 2.44 44.94 0.11 1.78 16 14 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 15 C -0.15 -2.78 8.59 71.98 0.62 -2.16 16 16 N -0.54 -15.75 4.05 -875.65 -3.55 -19.30 16 17 C 0.05 1.55 5.31 85.56 0.45 2.00 16 18 C 0.45 20.31 7.49 87.66 0.66 20.96 16 19 O -0.61 -34.31 14.74 -3.04 -0.04 -34.35 16 20 N -0.59 -27.83 5.09 -306.99 -1.56 -29.39 16 21 C -0.32 -19.10 10.16 84.04 0.85 -18.25 16 22 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 23 C -0.02 -1.07 5.50 84.93 0.47 -0.60 16 24 N -0.94 -57.07 13.96 21.66 0.30 -56.77 16 25 Si 0.97 38.48 27.74 68.60 1.90 40.38 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 29 C 0.06 1.78 4.58 86.32 0.40 2.17 16 30 H 0.11 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.11 1.13 7.90 -2.91 -0.02 1.10 16 32 H 0.11 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.07 0.86 7.86 -2.39 -0.02 0.85 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.42 5.70 8.60 -92.71 -0.80 4.90 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.15 8.13 -2.39 -0.02 1.13 16 44 H 0.07 1.11 6.38 -2.39 -0.02 1.10 16 45 H 0.09 1.99 8.00 -2.39 -0.02 1.97 16 46 H 0.12 3.06 5.42 -2.39 -0.01 3.05 16 47 H 0.39 14.89 5.76 -92.71 -0.53 14.35 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.05 1.96 6.69 -2.39 -0.02 1.95 16 50 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -91.40 405.46 0.17 -91.23 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.45 Total: 39.45 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.83 Total: 19.32 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -7.06 Total: -123.23 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: -1.07 Total: -67.15 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal Total: -91.40 0.17 -91.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131947672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.814 kcal (2) G-P(sol) polarization free energy of solvation -91.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds