Wall clock time and date at job start Tue Mar 31 2020 23:03:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30995 * 1
3 3 C 1.50706 * 119.99318 * 2 1
4 4 O 1.42906 * 109.46788 * 135.00074 * 3 2 1
5 5 C 1.42900 * 114.00187 * 179.97438 * 4 3 2
6 6 C 1.50692 * 109.47332 * 179.97438 * 5 4 3
7 7 O 1.21278 * 120.00173 * 0.02562 * 6 5 4
8 8 N 1.34777 * 120.00168 * 180.02562 * 6 5 4
9 9 C 1.46493 * 120.00285 * 180.02562 * 8 6 5
10 10 H 1.09004 * 109.54003 * 325.10270 * 9 8 6
11 11 C 1.53124 * 109.50557 * 85.19511 * 9 8 6
12 12 C 1.53116 * 109.16191 * 177.59533 * 11 9 8
13 13 C 1.53037 * 109.28156 * 302.34749 * 12 11 9
14 14 H 1.09003 * 109.46363 * 299.16329 * 13 12 11
15 15 C 1.52996 * 109.46439 * 179.19770 * 13 12 11
16 16 N 1.46849 * 109.52439 * 59.17735 * 13 12 11
17 17 C 1.46899 * 111.00415 * 174.16221 * 16 13 12
18 18 C 1.50699 * 109.47033 * 199.79027 * 17 16 13
19 19 O 1.21284 * 120.00347 * 359.97438 * 18 17 16
20 20 N 1.34779 * 119.99322 * 179.72533 * 18 17 16
21 21 C 1.37105 * 119.99638 * 180.27275 * 20 18 17
22 22 H 1.07998 * 119.99519 * 359.97438 * 21 20 18
23 23 C 1.38946 * 120.00210 * 179.97438 * 21 20 18
24 24 N 1.31413 * 120.00322 * 180.02562 * 23 21 20
25 25 Si 1.86799 * 119.99834 * 0.02562 * 23 21 20
26 26 H 1.48504 * 109.47225 * 89.99551 * 25 23 21
27 27 H 1.48496 * 109.47213 * 209.99927 * 25 23 21
28 28 H 1.48504 * 109.47005 * 329.99830 * 25 23 21
29 29 C 1.46849 * 111.19783 * 298.26441 * 16 13 12
30 30 H 1.08002 * 119.99808 * 180.02562 * 1 2 3
31 31 H 1.08003 * 120.00583 * 359.97438 * 1 2 3
32 32 H 1.07994 * 120.00659 * 180.02562 * 2 1 3
33 33 H 1.08997 * 109.47468 * 15.00370 * 3 2 1
34 34 H 1.09002 * 109.47050 * 254.99656 * 3 2 1
35 35 H 1.09004 * 109.46743 * 60.00149 * 5 4 3
36 36 H 1.09001 * 109.47036 * 300.00395 * 5 4 3
37 37 H 0.97003 * 119.99701 * 0.02562 * 8 6 5
38 38 H 1.08996 * 109.52370 * 297.50782 * 11 9 8
39 39 H 1.09005 * 109.51848 * 57.63261 * 11 9 8
40 40 H 1.09003 * 109.50385 * 62.29090 * 12 11 9
41 41 H 1.09005 * 109.50329 * 182.36934 * 12 11 9
42 42 H 1.09002 * 109.46846 * 292.18409 * 15 13 12
43 43 H 1.08994 * 109.47401 * 52.18629 * 15 13 12
44 44 H 1.09001 * 109.47233 * 172.19366 * 15 13 12
45 45 H 1.08993 * 109.47259 * 79.78326 * 17 16 13
46 46 H 1.09002 * 109.46715 * 319.78850 * 17 16 13
47 47 H 0.96997 * 120.00704 * 0.26894 * 20 18 17
48 48 H 0.96996 * 120.00114 * 180.02562 * 24 23 21
49 49 H 1.09002 * 109.45961 * 181.75775 * 29 16 13
50 50 H 1.09002 * 109.46199 * 301.72691 * 29 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0633 1.3052 0.0000
4 8 3.1266 1.2415 0.9527
5 6 3.9082 2.4351 1.0322
6 6 4.9937 2.2571 2.0622
7 8 5.0889 1.2110 2.6683
8 7 5.8587 3.2605 2.3099
9 6 6.9143 3.0874 3.3108
10 1 6.5431 2.4701 4.1290
11 6 8.1243 2.4064 2.6652
12 6 9.2444 2.2836 3.7019
13 6 9.5966 3.6752 4.2326
14 1 9.9442 4.3003 3.4100
15 6 10.7018 3.5553 5.2837
16 7 8.4068 4.2841 4.8408
17 6 8.7398 5.5624 5.4836
18 6 7.6692 5.9156 6.4837
19 8 6.7219 5.1757 6.6448
20 7 7.7672 7.0514 7.2027
21 6 6.7962 7.3701 8.1166
22 1 5.9526 6.7111 8.2600
23 6 6.8973 8.5407 8.8582
24 7 5.9668 8.8459 9.7346
25 14 8.3561 9.6807 8.6096
26 1 8.0348 10.6723 7.5518
27 1 8.6519 10.3904 9.8800
28 1 9.5413 8.8856 8.1991
29 6 7.3340 4.4556 3.8528
30 1 -0.5400 -0.9353 0.0004
31 1 -0.5401 0.9353 0.0004
32 1 1.8500 -0.9352 -0.0004
33 1 1.3853 2.1162 0.2660
34 1 2.4754 1.4869 -0.9927
35 1 3.2686 3.2697 1.3194
36 1 4.3585 2.6399 0.0609
37 1 5.7823 4.0974 1.8255
38 1 7.8404 1.4136 2.3163
39 1 8.4712 3.0035 1.8218
40 1 8.9098 1.6538 4.5263
41 1 10.1235 1.8377 3.2368
42 1 10.3107 3.0487 6.1660
43 1 11.5327 2.9813 4.8735
44 1 11.0494 4.5506 5.5606
45 1 8.8023 6.3442 4.7268
46 1 9.6988 5.4734 5.9940
47 1 8.5247 7.6434 7.0736
48 1 6.0373 9.6633 10.2520
49 1 6.4781 4.9370 4.3259
50 1 7.6922 5.0769 3.0319
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001131947672.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:56
Heat of formation + Delta-G solvation = -111.047146 kcal
Electronic energy + Delta-G solvation = -29620.973407 eV
Core-core repulsion = 25455.081350 eV
Total energy + Delta-G solvation = -4165.892057 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.36046 -40.53689 -39.44813 -38.66429 -36.20714 -35.90757 -34.78527 -33.92796
-33.66253 -32.52645 -29.53242 -29.23911 -27.39485 -26.42422 -26.02414 -24.18725
-22.61878 -21.70745 -21.20721 -20.99783 -20.68215 -20.12549 -18.41322 -18.08072
-17.72103 -17.40116 -17.02856 -16.72945 -16.53580 -16.20637 -16.11338 -15.63192
-15.41746 -15.34102 -15.04945 -14.90610 -14.64638 -14.56041 -14.14248 -14.06860
-13.86810 -13.46142 -13.28789 -13.20744 -13.09475 -13.00363 -12.77038 -12.57764
-12.39735 -12.03307 -11.96260 -11.91717 -11.87180 -11.78580 -11.45027 -11.35549
-11.00767 -10.86250 -10.39309 -10.27963 -10.21741 -10.11754 -9.15142 -8.38940
-5.99618 1.16916 1.31098 1.36908 1.45983 1.53098 1.80664 2.01247
2.24910 2.62107 3.03613 3.17290 3.30723 3.61043 3.77738 3.83338
3.94173 4.03881 4.04763 4.14592 4.22018 4.23371 4.26264 4.27314
4.39391 4.43719 4.45703 4.47869 4.59087 4.59774 4.62566 4.85097
4.86049 4.96345 4.99634 5.04847 5.09004 5.19779 5.30439 5.37472
5.49045 5.56147 5.64196 5.68084 5.93403 6.06174 6.06392 6.27398
6.52351 6.63365 6.92295 7.20940 7.43958 8.03133 8.79051
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.011456 B = 0.002362 C = 0.002026
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2443.562524 B =11850.125997 C =13817.497242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.178 4.178
3 C 0.083 3.917
4 O -0.399 6.399
5 C 0.048 3.952
6 C 0.507 3.493
7 O -0.576 6.576
8 N -0.709 5.709
9 C 0.156 3.844
10 H 0.048 0.952
11 C -0.118 4.118
12 C -0.106 4.106
13 C 0.082 3.918
14 H 0.067 0.933
15 C -0.150 4.150
16 N -0.538 5.538
17 C 0.052 3.948
18 C 0.451 3.549
19 O -0.608 6.608
20 N -0.594 5.594
21 C -0.324 4.324
22 H 0.051 0.949
23 C -0.019 4.019
24 N -0.938 5.938
25 Si 0.967 3.033
26 H -0.256 1.256
27 H -0.278 1.278
28 H -0.229 1.229
29 C 0.064 3.936
30 H 0.114 0.886
31 H 0.111 0.889
32 H 0.107 0.893
33 H 0.070 0.930
34 H 0.082 0.918
35 H 0.105 0.895
36 H 0.120 0.880
37 H 0.418 0.582
38 H 0.054 0.946
39 H 0.089 0.911
40 H 0.048 0.952
41 H 0.099 0.901
42 H 0.044 0.956
43 H 0.086 0.914
44 H 0.067 0.933
45 H 0.086 0.914
46 H 0.124 0.876
47 H 0.389 0.611
48 H 0.278 0.722
49 H 0.054 0.946
50 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.191 -7.377 -26.408 28.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.196 4.196
3 C 0.008 3.992
4 O -0.318 6.318
5 C -0.031 4.031
6 C 0.294 3.706
7 O -0.455 6.455
8 N -0.363 5.363
9 C 0.051 3.949
10 H 0.066 0.934
11 C -0.156 4.156
12 C -0.144 4.144
13 C -0.026 4.026
14 H 0.085 0.915
15 C -0.208 4.208
16 N -0.264 5.264
17 C -0.079 4.079
18 C 0.238 3.762
19 O -0.491 6.491
20 N -0.236 5.236
21 C -0.454 4.454
22 H 0.069 0.931
23 C -0.217 4.217
24 N -0.579 5.579
25 Si 0.787 3.213
26 H -0.180 1.180
27 H -0.203 1.203
28 H -0.153 1.153
29 C -0.064 4.064
30 H 0.133 0.867
31 H 0.129 0.871
32 H 0.125 0.875
33 H 0.089 0.911
34 H 0.100 0.900
35 H 0.123 0.877
36 H 0.138 0.862
37 H 0.255 0.745
38 H 0.073 0.927
39 H 0.107 0.893
40 H 0.067 0.933
41 H 0.118 0.882
42 H 0.063 0.937
43 H 0.104 0.896
44 H 0.086 0.914
45 H 0.104 0.896
46 H 0.142 0.858
47 H 0.225 0.775
48 H 0.087 0.913
49 H 0.072 0.928
50 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 5.395 -8.984 -25.252 27.340
hybrid contribution 0.053 1.626 0.032 1.627
sum 5.447 -7.358 -25.221 26.831
Atomic orbital electron populations
1.24063 0.95098 1.03481 0.97880 1.22806 0.96322 0.98174 1.02270
1.21810 0.88284 0.96535 0.92564 1.88008 1.45543 1.36339 1.61954
1.22334 0.92455 0.89289 0.99005 1.20991 0.82589 0.83348 0.83652
1.90720 1.73652 1.29373 1.51746 1.45711 1.31262 1.17752 1.41557
1.20721 0.87682 0.96484 0.90027 0.93399 1.21880 0.94236 1.00613
0.98885 1.21596 0.98691 0.96171 0.97939 1.21802 0.88909 0.95499
0.96340 0.91478 1.21974 0.97548 1.02695 0.98554 1.61181 1.09059
1.24197 1.31953 1.21911 0.97536 0.91861 0.96547 1.21051 0.89031
0.81446 0.84633 1.90558 1.36741 1.51699 1.70137 1.42035 1.23054
1.21710 1.36849 1.18959 1.03134 1.06806 1.16463 0.93093 1.26153
1.01571 0.98919 0.95079 1.69818 1.36326 1.26442 1.25304 0.85338
0.78308 0.78613 0.79069 1.17998 1.20286 1.15251 1.22108 0.95153
0.95411 0.93774 0.86739 0.87109 0.87507 0.91148 0.90004 0.87738
0.86238 0.74495 0.92748 0.89271 0.93314 0.88229 0.93689 0.89564
0.91412 0.89598 0.85792 0.77534 0.91261 0.92785 0.91568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.17 14.31 67.79 0.97 -1.21 16
2 C -0.18 -2.94 9.89 25.65 0.25 -2.69 16
3 C 0.08 1.29 6.35 71.24 0.45 1.74 16
4 O -0.40 -9.52 9.86 -129.94 -1.28 -10.80 16
5 C 0.05 0.84 6.42 71.23 0.46 1.30 16
6 C 0.51 13.53 7.87 87.65 0.69 14.22 16
7 O -0.58 -22.26 16.16 16.01 0.26 -22.00 16
8 N -0.71 -15.52 5.08 -442.30 -2.25 -17.77 16
9 C 0.16 4.28 2.62 45.05 0.12 4.39 16
10 H 0.05 1.83 7.58 -2.39 -0.02 1.82 16
11 C -0.12 -2.51 5.58 30.67 0.17 -2.34 16
12 C -0.11 -2.16 5.37 30.65 0.16 -2.00 16
13 C 0.08 1.67 2.44 44.94 0.11 1.78 16
14 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
15 C -0.15 -2.78 8.59 71.98 0.62 -2.16 16
16 N -0.54 -15.75 4.05 -875.65 -3.55 -19.30 16
17 C 0.05 1.55 5.31 85.56 0.45 2.00 16
18 C 0.45 20.31 7.49 87.66 0.66 20.96 16
19 O -0.61 -34.31 14.74 -3.04 -0.04 -34.35 16
20 N -0.59 -27.83 5.09 -306.99 -1.56 -29.39 16
21 C -0.32 -19.10 10.16 84.04 0.85 -18.25 16
22 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16
23 C -0.02 -1.07 5.50 84.93 0.47 -0.60 16
24 N -0.94 -57.07 13.96 21.66 0.30 -56.77 16
25 Si 0.97 38.48 27.74 68.60 1.90 40.38 16
26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16
27 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16
28 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16
29 C 0.06 1.78 4.58 86.32 0.40 2.17 16
30 H 0.11 1.21 8.06 -2.91 -0.02 1.18 16
31 H 0.11 1.13 7.90 -2.91 -0.02 1.10 16
32 H 0.11 1.93 8.06 -2.91 -0.02 1.90 16
33 H 0.07 0.86 7.86 -2.39 -0.02 0.85 16
34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
35 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16
36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.42 5.70 8.60 -92.71 -0.80 4.90 16
38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16
40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
41 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16
42 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16
43 H 0.09 1.15 8.13 -2.39 -0.02 1.13 16
44 H 0.07 1.11 6.38 -2.39 -0.02 1.10 16
45 H 0.09 1.99 8.00 -2.39 -0.02 1.97 16
46 H 0.12 3.06 5.42 -2.39 -0.01 3.05 16
47 H 0.39 14.89 5.76 -92.71 -0.53 14.35 16
48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16
49 H 0.05 1.96 6.69 -2.39 -0.02 1.95 16
50 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
Total: -1.00 -91.40 405.46 0.17 -91.23
By element:
Atomic # 1 Polarization: 39.89 SS G_CDS: -0.45 Total: 39.45 kcal
Atomic # 6 Polarization: 12.49 SS G_CDS: 6.83 Total: 19.32 kcal
Atomic # 7 Polarization: -116.18 SS G_CDS: -7.06 Total: -123.23 kcal
Atomic # 8 Polarization: -66.09 SS G_CDS: -1.07 Total: -67.15 kcal
Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal
Total: -91.40 0.17 -91.23 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131947672.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.814 kcal
(2) G-P(sol) polarization free energy of solvation -91.399 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.047 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds