Wall clock time and date at job start Tue Mar 31 2020 23:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45871 * 2 1 4 4 C 1.53039 * 109.45888 * 240.03335 * 2 1 3 5 5 C 1.53191 * 109.31416 * 178.62533 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34783 * 120.62874 * 126.37163 * 6 5 4 8 8 O 1.21274 * 119.99655 * 180.02562 * 7 6 5 9 9 C 1.50698 * 119.99922 * 0.02562 * 7 6 5 10 10 N 1.46498 * 109.46785 * 180.02562 * 9 7 6 11 11 C 1.46098 * 118.73220 * 90.00411 * 10 9 7 12 12 C 1.53014 * 109.92512 * 161.61740 * 11 10 9 13 13 O 1.43244 * 108.67097 * 49.16057 * 12 11 10 14 14 C 1.42959 * 112.98878 * 291.63506 * 13 12 11 15 15 C 1.33871 * 118.72716 * 269.72842 * 10 9 7 16 16 O 1.21274 * 118.83558 * 1.90684 * 15 10 9 17 17 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 18 18 C 1.53070 * 109.44404 * 119.82861 * 2 1 3 19 19 H 1.08997 * 109.38860 * 61.35680 * 18 2 1 20 20 C 1.52997 * 109.62317 * 301.25147 * 18 2 1 21 21 N 1.46493 * 109.47466 * 175.10532 * 20 18 2 22 22 C 1.36942 * 120.00327 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99623 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99882 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00403 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99683 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46918 * 60.00063 * 26 24 22 28 28 H 1.48498 * 109.46651 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47139 * 299.99849 * 26 24 22 30 30 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46825 * 299.97111 * 1 2 3 32 32 H 1.08996 * 109.47631 * 59.96435 * 1 2 3 33 33 H 1.09002 * 109.49876 * 58.67511 * 4 2 1 34 34 H 1.09005 * 109.52615 * 298.59760 * 4 2 1 35 35 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 36 36 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 37 37 H 1.09001 * 109.47385 * 300.00399 * 9 7 6 38 38 H 1.08997 * 109.47457 * 60.00250 * 9 7 6 39 39 H 1.09000 * 109.39027 * 281.75927 * 11 10 9 40 40 H 1.08995 * 109.39366 * 41.56635 * 11 10 9 41 41 H 1.09000 * 109.60468 * 168.91993 * 12 11 10 42 42 H 1.09000 * 109.60424 * 289.24063 * 12 11 10 43 43 H 1.08998 * 109.41616 * 169.70515 * 14 13 12 44 44 H 1.09002 * 109.41802 * 289.56309 * 14 13 12 45 45 H 1.09002 * 109.58751 * 173.39743 * 17 6 5 46 46 H 1.08996 * 109.58750 * 293.67928 * 17 6 5 47 47 H 1.09004 * 109.47223 * 295.10786 * 20 18 2 48 48 H 1.09000 * 109.47085 * 55.10317 * 20 18 2 49 49 H 0.97004 * 119.99550 * 0.02562 * 21 20 18 50 50 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6889 -1.2642 6 7 4.0676 -1.2493 0.0001 7 6 4.9610 -2.2584 0.0001 8 8 5.3626 -2.7127 1.0504 9 6 5.4608 -2.8223 -1.3050 10 7 6.4150 -3.9011 -1.0372 11 6 5.9129 -5.2672 -0.9097 12 6 7.0601 -6.2634 -1.0910 13 8 8.1525 -5.8618 -0.2560 14 6 8.7665 -4.6449 -0.6868 15 6 7.7140 -3.5979 -0.9244 16 8 8.0535 -2.4370 -1.0126 17 6 3.5711 -0.6890 1.2643 18 6 2.0395 -0.7180 1.2522 19 1 1.6952 -1.7521 1.2417 20 6 1.5055 -0.0140 2.5012 21 7 1.8977 -0.7699 3.6932 22 6 1.5301 -0.3278 4.9361 23 1 0.9509 0.5780 5.0375 24 6 1.9022 -1.0440 6.0655 25 7 2.6086 -2.1476 5.9419 26 14 1.4002 -0.4412 7.7609 27 1 -0.0811 -0.3808 7.8461 28 1 1.9172 -1.3767 8.7918 29 1 1.9651 0.9126 7.9922 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5144 -0.8896 33 1 1.6573 -0.2206 -2.1399 34 1 1.6975 -1.7556 -1.2390 35 1 3.9144 0.3406 -1.3672 36 1 3.9415 -1.2849 -2.0983 37 1 4.6201 -3.2148 -1.8769 38 1 5.9528 -2.0351 -1.8762 39 1 5.4711 -5.3996 0.0779 40 1 5.1552 -5.4470 -1.6723 41 1 6.7273 -7.2607 -0.8034 42 1 7.3771 -6.2704 -2.1339 43 1 9.4599 -4.2978 0.0793 44 1 9.3108 -4.8222 -1.6144 45 1 3.9413 -1.2850 2.0985 46 1 3.9163 0.3396 1.3687 47 1 1.9205 0.9925 2.5565 48 1 0.4183 0.0438 2.4489 49 1 2.4183 -1.5833 3.6020 50 1 2.8689 -2.6478 6.7312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132902894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:43 Heat of formation + Delta-G solvation = -92.155528 kcal Electronic energy + Delta-G solvation = -30987.367167 eV Core-core repulsion = 26822.294312 eV Total energy + Delta-G solvation = -4165.072855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09157 -39.94299 -38.07710 -37.73659 -35.49973 -34.96987 -33.67639 -31.90087 -30.76217 -29.96343 -29.43984 -28.07508 -26.49632 -25.18088 -24.15260 -23.28013 -23.11315 -21.22418 -20.26279 -19.47852 -18.76552 -17.99872 -17.55406 -17.19235 -16.91094 -16.12029 -15.73875 -15.72991 -15.14754 -14.83925 -14.83431 -14.51052 -14.29314 -13.95399 -13.79053 -13.63994 -13.45494 -13.36311 -13.17939 -13.02390 -12.61849 -12.57397 -12.18984 -11.99511 -11.85678 -11.75573 -11.62351 -11.49062 -10.98205 -10.87403 -10.84907 -10.77546 -10.58046 -10.29629 -10.14291 -10.01814 -9.85618 -9.69302 -9.56189 -8.90336 -8.80560 -8.46224 -6.84537 -5.67831 -2.97604 2.20669 2.46816 2.73174 3.15800 3.42672 3.48845 3.52741 3.54527 4.01836 4.41330 4.43931 4.58242 4.62359 4.67227 4.74254 4.82294 4.85737 4.89035 4.90812 5.06536 5.11109 5.16404 5.25859 5.28304 5.34065 5.53203 5.62859 5.66041 5.67386 5.71205 5.81065 5.88313 5.89611 5.96845 6.03570 6.19679 6.25900 6.33430 6.44150 6.46235 6.59798 6.67625 6.83253 6.91843 7.04699 7.50911 7.75500 7.79355 8.31525 8.49837 9.60636 10.18913 10.52935 11.54420 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.003198 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.504733 B = 8754.008322 C =10725.580724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.611 5.611 7 C 0.495 3.505 8 O -0.518 6.518 9 C 0.093 3.907 10 N -0.586 5.586 11 C 0.077 3.923 12 C 0.046 3.954 13 O -0.366 6.366 14 C 0.054 3.946 15 C 0.493 3.507 16 O -0.538 6.538 17 C 0.121 3.879 18 C -0.100 4.100 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.018 0.982 48 H 0.027 0.973 49 H 0.384 0.616 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -5.190 -24.982 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.345 5.345 7 C 0.280 3.720 8 O -0.393 6.393 9 C -0.033 4.033 10 N -0.320 5.320 11 C -0.046 4.046 12 C -0.031 4.031 13 O -0.284 6.284 14 C -0.025 4.025 15 C 0.281 3.719 16 O -0.416 6.416 17 C -0.001 4.001 18 C -0.120 4.120 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.377 5.377 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.036 0.964 48 H 0.044 0.956 49 H 0.218 0.782 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.246 -4.885 -24.141 25.183 hybrid contribution -0.422 0.254 0.743 0.891 sum 4.824 -4.631 -23.398 24.335 Atomic orbital electron populations 1.21877 0.94942 1.01920 1.01727 1.21093 0.95958 0.99438 0.93906 0.91065 1.21983 0.94511 1.01586 0.98547 1.21745 0.94820 0.99441 0.85672 1.48177 1.43262 1.35337 1.07760 1.20974 0.79294 0.79974 0.91722 1.90781 1.56452 1.59079 1.32987 1.21428 0.93758 0.92313 0.95831 1.47041 1.06231 1.07771 1.70916 1.22272 0.97832 0.80382 1.04080 1.23002 0.86305 0.98601 0.95203 1.88241 1.47682 1.39520 1.52946 1.22807 0.93845 0.82589 1.03291 1.21011 0.83763 0.90967 0.76175 1.90745 1.80606 1.20117 1.50101 1.21710 0.93573 0.99127 0.85700 1.21705 0.94487 1.00647 0.95130 0.90900 1.20712 0.96774 0.94051 0.85374 1.42406 1.65441 1.29124 1.00768 1.19153 1.28103 1.06344 0.83799 0.91317 1.24749 1.00790 0.97510 0.97782 1.69662 1.42241 1.17270 1.28613 0.86290 0.77928 0.77688 0.84394 1.21344 1.21698 1.21296 0.92808 0.91617 0.93234 0.90806 0.91501 0.91158 0.90407 0.87581 0.86829 0.89672 0.89527 0.86461 0.91881 0.84992 0.89263 0.87926 0.91735 0.96446 0.95555 0.78152 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 2 C -0.08 -1.02 2.22 -90.57 -0.20 -1.22 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.19 5.36 -26.61 -0.14 -1.33 16 5 C 0.11 1.02 6.34 -3.71 -0.02 1.00 16 6 N -0.61 -8.74 2.97 -172.77 -0.51 -9.25 16 7 C 0.49 7.84 7.76 -10.98 -0.09 7.75 16 8 O -0.52 -10.97 15.84 5.56 0.09 -10.88 16 9 C 0.09 1.03 4.12 -5.20 -0.02 1.01 16 10 N -0.59 -6.85 2.32 -175.79 -0.41 -7.25 16 11 C 0.08 0.67 6.67 -4.25 -0.03 0.64 16 12 C 0.05 0.32 6.89 37.16 0.26 0.57 16 13 O -0.37 -3.80 10.86 -35.23 -0.38 -4.18 16 14 C 0.05 0.53 6.99 35.83 0.25 0.78 16 15 C 0.49 6.52 7.58 -11.56 -0.09 6.43 16 16 O -0.54 -8.98 16.38 5.56 0.09 -8.89 16 17 C 0.12 2.11 5.51 -3.71 -0.02 2.09 16 18 C -0.10 -1.64 1.92 -90.48 -0.17 -1.81 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.16 3.22 5.42 -4.05 -0.02 3.20 16 21 N -0.73 -19.20 5.38 -59.91 -0.32 -19.52 16 22 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -29.39 13.06 55.49 0.72 -28.67 16 26 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 37 H 0.11 0.76 7.48 -51.93 -0.39 0.37 16 38 H 0.11 1.21 7.09 -51.93 -0.37 0.84 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.46 7.99 -51.93 -0.42 0.05 16 41 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.31 8.10 -51.93 -0.42 -0.12 16 43 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 2.27 6.21 -51.93 -0.32 1.95 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.03 0.53 6.16 -51.93 -0.32 0.21 16 49 H 0.38 10.83 6.89 -40.82 -0.28 10.54 16 50 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -38.84 392.91 -8.24 -47.08 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.19 Total: 7.42 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -0.22 Total: 10.13 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -0.52 Total: -64.69 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.20 Total: -23.96 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.84 -8.24 -47.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132902894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.079 kcal (2) G-P(sol) polarization free energy of solvation -38.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds