Wall clock time and date at job start Tue Mar 31 2020 23:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46254 * 2 1 4 4 C 1.53040 * 109.45669 * 119.97165 * 2 1 3 5 5 C 1.53195 * 109.31233 * 181.36998 * 4 2 1 6 6 N 1.46920 * 108.77715 * 305.37008 * 5 4 2 7 7 C 1.34780 * 120.63110 * 233.58100 * 6 5 4 8 8 O 1.21280 * 120.00423 * 179.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 0.02562 * 7 6 5 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.46090 * 118.73150 * 269.73105 * 10 9 7 12 12 C 1.53188 * 109.82931 * 161.46447 * 11 10 9 13 13 O 1.43249 * 108.53817 * 49.51133 * 12 11 10 14 14 C 1.42961 * 112.98901 * 291.48996 * 13 12 11 15 15 C 1.33875 * 118.72875 * 89.99927 * 10 9 7 16 16 O 1.21281 * 118.83234 * 1.88741 * 15 10 9 17 17 C 1.46928 * 118.74133 * 53.85726 * 6 5 4 18 18 C 1.53040 * 109.45010 * 240.03500 * 2 1 3 19 19 H 1.08996 * 109.50064 * 298.57268 * 18 2 1 20 20 C 1.53001 * 109.49889 * 58.67550 * 18 2 1 21 21 N 1.46494 * 109.46918 * 185.00140 * 20 18 2 22 22 C 1.36944 * 120.00084 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99349 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00190 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00033 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99817 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47327 * 89.99593 * 26 24 22 28 28 H 1.48498 * 109.47090 * 209.99636 * 26 24 22 29 29 H 1.48504 * 109.47259 * 329.99759 * 26 24 22 30 30 H 1.08998 * 109.47537 * 300.03073 * 1 2 3 31 31 H 1.09004 * 109.46795 * 60.02857 * 1 2 3 32 32 H 1.09001 * 109.47243 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49589 * 61.42562 * 4 2 1 34 34 H 1.08994 * 109.52726 * 301.33737 * 4 2 1 35 35 H 1.09002 * 109.59128 * 185.58008 * 5 4 2 36 36 H 1.09004 * 109.58369 * 65.15588 * 5 4 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.09000 * 109.39695 * 281.78226 * 11 10 9 40 40 H 1.08997 * 109.39233 * 41.50373 * 11 10 9 41 41 H 1.09010 * 109.79057 * 289.72915 * 12 11 10 42 42 H 1.08999 * 109.68518 * 169.23887 * 12 11 10 43 43 H 1.09001 * 109.41602 * 289.49277 * 14 13 12 44 44 H 1.09004 * 109.35841 * 169.66207 * 14 13 12 45 45 H 1.09005 * 109.58457 * 65.92718 * 17 6 5 46 46 H 1.09001 * 109.58558 * 186.35342 * 17 6 5 47 47 H 1.09004 * 109.46698 * 304.99644 * 20 18 2 48 48 H 1.08994 * 109.47335 * 64.99334 * 20 18 2 49 49 H 0.97001 * 120.00546 * 359.97438 * 21 20 18 50 50 H 0.96995 * 119.99600 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5713 -0.6891 1.2641 6 7 4.0676 -1.2493 -0.0002 7 6 4.9616 -2.2579 -0.0004 8 8 5.3633 -2.7120 -1.0507 9 6 5.4613 -2.8220 1.3047 10 7 6.4164 -3.9001 1.0368 11 6 5.9160 -5.2672 0.9143 12 6 6.9532 -6.1379 0.1983 13 8 8.2258 -5.9385 0.8249 14 6 8.7583 -4.6304 0.6034 15 6 7.7146 -3.5952 0.9192 16 8 8.0611 -2.4431 1.0724 17 6 3.5753 -0.6851 -1.2644 18 6 2.0396 -0.7208 -1.2502 19 1 1.6974 -1.7556 -1.2385 20 6 1.5026 -0.0186 -2.4990 21 7 1.8913 -0.7769 -3.6906 22 6 1.5198 -0.3374 -4.9333 23 1 0.9399 0.5681 -5.0347 24 6 1.8885 -1.0556 -6.0625 25 7 2.5956 -2.1588 -5.9389 26 14 1.3824 -0.4556 -7.7575 27 1 2.4297 0.4495 -8.2954 28 1 1.2192 -1.6188 -8.6660 29 1 0.0959 0.2796 -7.6587 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6975 -1.7557 1.2382 34 1 1.6573 -0.2213 2.1401 35 1 3.9416 -1.2851 2.0982 36 1 3.9144 0.3404 1.3672 37 1 5.9526 -2.0347 1.8765 38 1 4.6207 -3.2154 1.8761 39 1 5.7221 -5.6720 1.9076 40 1 4.9900 -5.2635 0.3393 41 1 7.0137 -5.8517 -0.8518 42 1 6.6679 -7.1871 0.2755 43 1 9.0604 -4.5339 -0.4394 44 1 9.6248 -4.4792 1.2472 45 1 3.9188 0.3446 -1.3633 46 1 3.9483 -1.2787 -2.0991 47 1 0.4155 0.0395 -2.4440 48 1 1.9178 0.9874 -2.5570 49 1 2.4118 -1.5904 -3.5996 50 1 2.8536 -2.6604 -6.7280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132902897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:52 Heat of formation + Delta-G solvation = -121.623365 kcal Electronic energy + Delta-G solvation = -31023.123009 eV Core-core repulsion = 26856.772333 eV Total energy + Delta-G solvation = -4166.350676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06018 -41.04535 -39.19517 -38.74203 -36.65086 -36.41773 -35.11471 -33.54010 -31.81251 -31.28679 -30.43606 -29.11604 -27.72580 -26.57343 -25.06734 -24.83702 -24.22615 -22.60037 -21.39829 -20.47968 -19.90727 -19.17852 -18.79943 -18.44194 -18.11585 -17.13150 -16.77131 -16.74845 -16.66775 -16.16383 -15.74485 -15.65046 -15.52467 -15.24486 -15.13410 -14.89848 -14.57384 -14.44301 -14.27460 -14.17606 -14.06716 -13.91975 -13.11788 -13.07667 -13.05920 -12.83051 -12.79892 -12.65112 -12.61333 -12.34477 -12.18308 -12.03336 -11.92610 -11.78795 -11.66754 -11.37184 -11.21984 -11.05150 -10.93769 -10.59218 -9.89634 -9.68039 -9.02256 -7.97194 -5.27366 1.20961 1.42920 1.45944 1.52285 1.54292 1.64122 2.06896 2.53113 2.70921 3.23654 3.35892 3.43135 3.67051 3.73234 3.79704 3.82726 3.99187 4.04757 4.07475 4.16730 4.18094 4.24171 4.28384 4.36348 4.39470 4.45257 4.55795 4.59801 4.67520 4.73181 4.76498 4.79440 4.81997 4.94410 4.95058 5.05472 5.08364 5.13307 5.23025 5.27721 5.43568 5.46229 5.52658 5.57997 5.69425 6.16129 6.23676 6.36818 6.82657 7.10456 7.29084 8.05809 8.27799 9.26378 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.003222 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.331878 B = 8688.912981 C =10681.699633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.097 3.903 6 N -0.606 5.606 7 C 0.485 3.515 8 O -0.586 6.586 9 C 0.098 3.902 10 N -0.590 5.590 11 C 0.079 3.921 12 C 0.039 3.961 13 O -0.372 6.372 14 C 0.056 3.944 15 C 0.483 3.517 16 O -0.583 6.583 17 C 0.128 3.872 18 C -0.084 4.084 19 H 0.054 0.946 20 C 0.156 3.844 21 N -0.748 5.748 22 C -0.247 4.247 23 H 0.078 0.922 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.265 1.265 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.150 0.850 43 H 0.093 0.907 44 H 0.151 0.849 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.035 0.965 48 H 0.018 0.982 49 H 0.370 0.630 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -4.395 25.628 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.024 4.024 6 N -0.339 5.339 7 C 0.273 3.727 8 O -0.466 6.466 9 C -0.028 4.028 10 N -0.322 5.322 11 C -0.043 4.043 12 C -0.037 4.037 13 O -0.290 6.290 14 C -0.024 4.024 15 C 0.272 3.728 16 O -0.464 6.464 17 C 0.005 3.995 18 C -0.103 4.103 19 H 0.073 0.927 20 C 0.029 3.971 21 N -0.390 5.390 22 C -0.378 4.378 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.216 1.216 28 H -0.221 1.221 29 H -0.189 1.189 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.171 0.829 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.167 0.833 43 H 0.111 0.889 44 H 0.168 0.832 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.036 0.964 49 H 0.201 0.799 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.495 -4.098 25.177 25.747 hybrid contribution -0.078 0.238 -2.101 2.116 sum 3.417 -3.860 23.076 23.645 Atomic orbital electron populations 1.21847 0.94164 1.01836 1.02314 1.21102 0.96523 0.99514 0.92801 0.90298 1.21975 0.93853 1.01694 0.98233 1.22191 0.95300 1.00708 0.84157 1.48288 1.42631 1.34692 1.08307 1.21924 0.78565 0.79598 0.92597 1.90731 1.58913 1.61358 1.35605 1.21571 0.95170 0.92789 0.93277 1.47283 1.06031 1.09032 1.69812 1.22475 0.98728 0.79355 1.03762 1.23230 0.82040 1.02730 0.95713 1.88165 1.35854 1.29904 1.75104 1.22846 0.95086 0.79922 1.04516 1.21599 0.84747 0.90735 0.75675 1.90704 1.81133 1.22447 1.52136 1.21429 0.94336 0.97745 0.86019 1.21611 0.93369 0.99667 0.95698 0.92723 1.20934 0.97225 0.93728 0.85191 1.42670 1.65245 1.29073 1.02034 1.19674 1.26919 1.06164 0.85074 0.90383 1.25639 1.01548 0.97928 1.01893 1.69865 1.44373 1.18901 1.29126 0.85106 0.78185 0.76775 0.79500 1.21552 1.22127 1.18941 0.90149 0.93511 0.93240 0.91455 0.86868 0.86626 0.89906 0.86015 0.82872 0.86965 0.89653 0.93175 0.83256 0.88909 0.83180 0.91993 0.93472 0.94706 0.96372 0.79885 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.82 71.98 0.63 -2.25 16 2 C -0.08 -1.72 2.22 -10.77 -0.02 -1.74 16 3 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 4 C -0.12 -1.70 5.36 30.67 0.16 -1.54 16 5 C 0.10 1.51 6.34 86.36 0.55 2.06 16 6 N -0.61 -16.70 2.97 -818.04 -2.43 -19.13 16 7 C 0.49 15.07 7.76 87.66 0.68 15.75 16 8 O -0.59 -25.28 15.84 -3.03 -0.05 -25.33 16 9 C 0.10 1.99 4.14 85.63 0.35 2.34 16 10 N -0.59 -13.22 2.32 -828.63 -1.92 -15.15 16 11 C 0.08 1.23 6.63 86.52 0.57 1.80 16 12 C 0.04 0.62 6.91 72.05 0.50 1.11 16 13 O -0.37 -6.76 10.85 -148.98 -1.62 -8.37 16 14 C 0.06 1.10 6.98 71.13 0.50 1.60 16 15 C 0.48 12.83 7.58 87.69 0.66 13.49 16 16 O -0.58 -19.72 16.36 -3.03 -0.05 -19.77 16 17 C 0.13 4.59 5.55 86.51 0.48 5.07 16 18 C -0.08 -2.72 1.93 -10.57 -0.02 -2.74 16 19 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 20 C 0.16 6.36 5.41 86.38 0.47 6.83 16 21 N -0.75 -40.33 5.38 -343.45 -1.85 -42.18 16 22 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 23 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -63.20 13.06 21.65 0.28 -62.92 16 26 Si 0.98 48.01 29.55 68.60 2.03 50.04 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.11 6.29 -2.38 -0.02 1.09 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 1.00 5.93 -2.39 -0.01 0.98 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.12 2.38 7.04 -2.39 -0.02 2.36 16 38 H 0.15 1.63 7.59 -2.39 -0.02 1.61 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.44 8.13 -2.39 -0.02 1.42 16 41 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 42 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.05 2.23 6.23 -2.39 -0.01 2.21 16 47 H 0.04 1.39 6.14 -2.38 -0.01 1.38 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.37 21.87 6.91 -92.71 -0.64 21.23 16 50 H 0.25 15.74 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -88.36 393.10 1.52 -86.84 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.30 Total: 32.02 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.82 Total: 23.96 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -5.91 Total: -139.38 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -1.71 Total: -53.47 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -88.36 1.52 -86.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132902897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.786 kcal (2) G-P(sol) polarization free energy of solvation -88.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds