Wall clock time and date at job start Tue Mar 31 2020 23:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.78339 * 2 1 4 4 C 1.55162 * 110.71721 * 236.76097 * 2 1 3 5 5 C 1.54913 * 101.61352 * 206.15208 * 4 2 1 6 6 N 1.47423 * 104.83134 * 36.99592 * 5 4 2 7 7 C 1.34773 * 125.64641 * 155.90308 * 6 5 4 8 8 O 1.21351 * 119.99990 * 179.97438 * 7 6 5 9 9 C 1.49442 * 120.00275 * 359.97418 * 7 6 5 10 10 O 1.21351 * 120.00301 * 0.02562 * 9 7 6 11 11 N 1.34784 * 119.99966 * 179.97438 * 9 7 6 12 12 C 1.46503 * 119.99804 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47145 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.39838 * 305.00048 * 13 12 11 15 15 C 1.54289 * 109.40638 * 185.16385 * 13 12 11 16 16 N 1.48176 * 110.69485 * 200.49029 * 15 13 12 17 17 C 1.36937 * 118.51708 * 138.76734 * 16 15 13 18 18 H 1.07998 * 120.00429 * 206.12137 * 17 16 15 19 19 C 1.38815 * 119.99697 * 26.12773 * 17 16 15 20 20 N 1.31620 * 120.00236 * 15.50367 * 19 17 16 21 21 Si 1.86800 * 120.00001 * 195.50977 * 19 17 16 22 22 H 1.48495 * 109.47404 * 89.99486 * 21 19 17 23 23 H 1.48497 * 109.47190 * 209.99681 * 21 19 17 24 24 H 1.48501 * 109.46862 * 329.99611 * 21 19 17 25 25 C 1.44458 * 122.97297 * 318.75048 * 16 15 13 26 26 C 1.54870 * 109.32982 * 88.95471 * 25 16 15 27 27 C 1.47693 * 109.68149 * 290.10202 * 26 25 16 28 28 O 1.40523 * 109.40640 * 64.83397 * 13 12 11 29 29 C 1.47020 * 108.70134 * 335.86717 * 6 5 4 30 30 H 1.09000 * 109.47634 * 183.23210 * 1 2 3 31 31 H 1.08995 * 109.47240 * 303.23771 * 1 2 3 32 32 H 1.09005 * 109.47098 * 63.23833 * 1 2 3 33 33 H 1.09001 * 111.00081 * 88.06789 * 4 2 1 34 34 H 1.08991 * 111.00757 * 324.24878 * 4 2 1 35 35 H 1.09004 * 110.36051 * 155.83114 * 5 4 2 36 36 H 1.08995 * 110.37049 * 278.04604 * 5 4 2 37 37 H 0.96996 * 120.00148 * 0.02562 * 11 9 7 38 38 H 1.09004 * 109.46936 * 300.00205 * 12 11 9 39 39 H 1.09004 * 109.47432 * 60.00071 * 12 11 9 40 40 H 1.09001 * 109.23021 * 320.80444 * 15 13 12 41 41 H 1.08996 * 109.23386 * 80.21414 * 15 13 12 42 42 H 0.96999 * 120.00361 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.49623 * 208.91703 * 25 16 15 44 44 H 1.09008 * 109.49378 * 329.00123 * 25 16 15 45 45 H 1.08997 * 109.43922 * 50.16970 * 26 25 16 46 46 H 1.09004 * 109.43727 * 170.08431 * 26 25 16 47 47 H 1.09001 * 108.64330 * 181.87891 * 27 26 25 48 48 H 1.08997 * 108.64113 * 299.85774 * 27 26 25 49 49 H 1.09004 * 109.88009 * 120.47714 * 29 6 5 50 50 H 1.08997 * 109.88267 * 241.63923 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 -1.2138 5 6 3.4632 -1.2507 -0.6882 6 7 3.2449 -1.5517 0.7384 7 6 3.9925 -2.3851 1.4886 8 8 3.7197 -2.5579 2.6584 9 6 5.1574 -3.0964 0.8801 10 8 5.4305 -2.9233 -0.2896 11 7 5.9053 -3.9295 1.6306 12 6 7.0476 -4.6263 1.0341 13 6 7.7198 -5.5028 2.0928 14 1 7.9852 -4.8903 2.9545 15 6 8.9967 -6.1343 1.5001 16 7 9.3974 -7.3315 2.2759 17 6 9.8375 -8.4349 1.5947 18 1 9.7368 -9.4164 2.0338 19 6 10.4131 -8.2917 0.3396 20 7 10.8157 -7.1070 -0.0686 21 14 10.6161 -9.7806 -0.7701 22 1 9.4060 -9.9359 -1.6165 23 1 11.8064 -9.5925 -1.6380 24 1 10.7976 -10.9971 0.0620 25 6 9.3452 -7.3872 3.7185 26 6 7.9475 -7.8853 4.1620 27 6 6.9364 -6.8467 3.8788 28 8 6.8309 -6.5141 2.4948 29 6 2.0771 -0.7914 1.2072 30 1 -0.3634 -1.0260 0.0579 31 1 -0.3633 0.5632 0.8595 32 1 -0.3633 0.4628 -0.9176 33 1 2.1850 -0.1518 -2.0871 34 1 1.4448 -1.6531 -1.4380 35 1 3.7951 -2.1437 -1.2179 36 1 4.1939 -0.4499 -0.8011 37 1 5.6872 -4.0676 2.5656 38 1 6.7021 -5.2519 0.2110 39 1 7.7638 -3.8952 0.6590 40 1 8.8077 -6.4232 0.4662 41 1 9.8045 -5.4031 1.5265 42 1 11.2176 -7.0068 -0.9457 43 1 10.1090 -8.0738 4.0839 44 1 9.5237 -6.3927 4.1276 45 1 7.6963 -8.7946 3.6159 46 1 7.9601 -8.0963 5.2314 47 1 5.9662 -7.2006 4.2275 48 1 7.1977 -5.9456 4.4335 49 1 1.3137 -1.4757 1.5777 50 1 2.3759 -0.1030 1.9976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150572901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:28 Heat of formation + Delta-G solvation = -81.901928 kcal Electronic energy + Delta-G solvation = -30451.102114 eV Core-core repulsion = 26286.473889 eV Total energy + Delta-G solvation = -4164.628225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85374 -39.27451 -38.57765 -37.79359 -35.27223 -34.74933 -33.22466 -32.54079 -31.10369 -29.97762 -28.95028 -27.53556 -25.91254 -25.33760 -24.11262 -22.94288 -21.96052 -20.99952 -20.65417 -20.07624 -19.51308 -17.94830 -17.12553 -16.86361 -16.64600 -16.27012 -15.74514 -15.57332 -15.06108 -14.93003 -14.35157 -14.29430 -14.09384 -13.82805 -13.75347 -13.39314 -13.28561 -13.16892 -12.91767 -12.75284 -12.52019 -12.39180 -12.28970 -12.15396 -11.82482 -11.69867 -11.35553 -11.19525 -11.15080 -10.92869 -10.87257 -10.73357 -10.59560 -10.20947 -10.00650 -9.90798 -9.69812 -9.51902 -9.13356 -8.95385 -8.85081 -8.40620 -6.70156 -5.78260 -3.20989 1.41664 2.20617 3.20233 3.39618 3.43675 3.47335 3.47866 4.05347 4.23033 4.26203 4.39860 4.44293 4.51628 4.91138 4.95863 5.01369 5.09899 5.21684 5.28459 5.39093 5.41447 5.45309 5.51624 5.54707 5.56637 5.64070 5.67330 5.69859 5.70834 5.86503 5.91835 5.92940 5.94871 6.06683 6.18984 6.26796 6.37357 6.42078 6.54174 6.77425 6.96246 6.98152 7.16442 7.25061 7.55523 7.67058 7.82082 7.95435 8.02386 8.46235 9.21696 9.88264 10.32367 11.29808 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.002434 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.929134 B =11500.697969 C =12555.092277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.095 3.905 6 N -0.593 5.593 7 C 0.521 3.479 8 O -0.523 6.523 9 C 0.506 3.494 10 O -0.520 6.520 11 N -0.687 5.687 12 C 0.122 3.878 13 C 0.054 3.946 14 H 0.050 0.950 15 C 0.166 3.834 16 N -0.585 5.585 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.157 3.843 26 C -0.183 4.183 27 C 0.078 3.922 28 O -0.360 6.360 29 C 0.109 3.891 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.036 0.964 49 H 0.074 0.926 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 14.762 2.121 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.171 4.171 5 C -0.027 4.027 6 N -0.328 5.328 7 C 0.305 3.695 8 O -0.399 6.399 9 C 0.286 3.714 10 O -0.397 6.397 11 N -0.339 5.339 12 C -0.001 4.001 13 C -0.006 4.006 14 H 0.068 0.932 15 C 0.040 3.960 16 N -0.306 5.306 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.028 3.972 26 C -0.224 4.224 27 C 0.001 3.999 28 O -0.278 6.278 29 C -0.014 4.014 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.379 14.689 1.691 22.817 hybrid contribution 0.181 -0.726 0.025 0.748 sum -17.197 13.963 1.716 22.219 Atomic orbital electron populations 1.21755 0.93549 1.02394 1.02253 1.22264 0.96527 0.99451 0.94234 0.89479 1.22967 0.96025 1.00435 0.97675 1.22698 0.97033 1.03013 0.79945 1.48249 1.29287 1.42900 1.12366 1.19984 0.83732 0.79933 0.85900 1.90758 1.70310 1.63050 1.15822 1.19875 0.83797 0.81083 0.86680 1.90719 1.69774 1.63495 1.15690 1.45827 1.29816 1.43236 1.15001 1.21781 0.86618 0.94728 0.96927 1.23199 0.92454 0.88824 0.96156 0.93241 1.21627 0.89161 0.88407 0.96769 1.43569 1.74043 1.13579 0.99424 1.19194 1.32516 0.86530 1.00070 0.91722 1.25006 0.98161 0.96621 0.99657 1.70022 1.43346 1.21912 1.19870 0.86285 0.77201 0.82435 0.80797 1.21416 1.21805 1.20524 1.20681 0.93301 0.97647 0.85531 1.22294 0.99780 1.00599 0.99680 1.21351 0.98831 0.97438 0.82289 1.87473 1.58365 1.56583 1.25413 1.22158 0.87429 0.94688 0.97084 0.92211 0.92230 0.91912 0.89509 0.90344 0.87771 0.90794 0.75353 0.89801 0.89477 0.89725 0.94394 0.93595 0.93089 0.95310 0.91114 0.92308 0.91412 0.94617 0.90818 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.16 37.16 0.34 -0.35 16 2 C -0.11 -0.65 3.55 -88.76 -0.32 -0.96 16 3 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.88 6.53 -24.58 -0.16 -1.04 16 5 C 0.10 0.92 6.06 -2.53 -0.02 0.90 16 6 N -0.59 -6.82 3.33 -171.00 -0.57 -7.39 16 7 C 0.52 7.40 7.91 -11.59 -0.09 7.31 16 8 O -0.52 -8.36 16.80 5.50 0.09 -8.27 16 9 C 0.51 7.69 7.86 -11.59 -0.09 7.60 16 10 O -0.52 -8.60 13.78 5.50 0.08 -8.52 16 11 N -0.69 -10.37 5.49 -60.72 -0.33 -10.70 16 12 C 0.12 2.05 5.24 -4.04 -0.02 2.03 16 13 C 0.05 0.99 2.35 -26.06 -0.06 0.93 16 14 H 0.05 0.84 7.20 -51.93 -0.37 0.46 16 15 C 0.17 3.84 4.50 -2.44 -0.01 3.83 16 16 N -0.59 -14.31 2.58 -171.49 -0.44 -14.75 16 17 C -0.25 -6.88 9.43 -15.06 -0.14 -7.03 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 20 N -0.91 -25.81 10.98 55.49 0.61 -25.20 16 21 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.16 3.19 5.68 -4.14 -0.02 3.17 16 26 C -0.18 -3.19 6.03 -28.31 -0.17 -3.36 16 27 C 0.08 1.27 6.05 34.59 0.21 1.48 16 28 O -0.36 -6.90 9.78 -34.09 -0.33 -7.23 16 29 C 0.11 0.96 6.47 -3.04 -0.02 0.94 16 30 H 0.06 0.31 8.06 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.10 1.19 6.16 -51.93 -0.32 0.87 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 5.88 7.93 -40.82 -0.32 5.55 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 2.20 6.24 -51.93 -0.32 1.88 16 41 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.05 1.05 7.97 -51.93 -0.41 0.64 16 44 H 0.03 0.55 8.10 -51.92 -0.42 0.13 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.04 0.53 7.26 -51.93 -0.38 0.15 16 49 H 0.07 0.67 7.77 -51.93 -0.40 0.26 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -31.56 393.85 -9.06 -40.62 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.41 Total: 3.19 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -0.66 Total: 15.48 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.74 Total: -58.05 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.17 Total: -24.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.56 -9.06 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150572901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.282 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds