Wall clock time and date at job start Tue Mar 31 2020 23:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.78339 * 2 1 4 4 C 1.55162 * 110.71721 * 236.76097 * 2 1 3 5 5 C 1.54913 * 101.61352 * 206.15208 * 4 2 1 6 6 N 1.47423 * 104.83134 * 36.99592 * 5 4 2 7 7 C 1.34773 * 125.64641 * 155.90308 * 6 5 4 8 8 O 1.21351 * 119.99990 * 179.97438 * 7 6 5 9 9 C 1.49442 * 120.00275 * 359.97418 * 7 6 5 10 10 O 1.21351 * 120.00301 * 0.02562 * 9 7 6 11 11 N 1.34784 * 119.99966 * 179.97438 * 9 7 6 12 12 C 1.46503 * 119.99804 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47145 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.39838 * 305.00048 * 13 12 11 15 15 C 1.54289 * 109.40638 * 185.16385 * 13 12 11 16 16 N 1.48176 * 110.69485 * 200.49029 * 15 13 12 17 17 C 1.36937 * 118.51708 * 138.76734 * 16 15 13 18 18 H 1.07998 * 120.00429 * 206.12137 * 17 16 15 19 19 C 1.38815 * 119.99697 * 26.12773 * 17 16 15 20 20 N 1.31620 * 120.00236 * 15.50367 * 19 17 16 21 21 Si 1.86800 * 120.00001 * 195.50977 * 19 17 16 22 22 H 1.48495 * 109.47404 * 89.99486 * 21 19 17 23 23 H 1.48497 * 109.47190 * 209.99681 * 21 19 17 24 24 H 1.48501 * 109.46862 * 329.99611 * 21 19 17 25 25 C 1.44458 * 122.97297 * 318.75048 * 16 15 13 26 26 C 1.54870 * 109.32982 * 88.95471 * 25 16 15 27 27 C 1.47693 * 109.68149 * 290.10202 * 26 25 16 28 28 O 1.40523 * 109.40640 * 64.83397 * 13 12 11 29 29 C 1.47020 * 108.70134 * 335.86717 * 6 5 4 30 30 H 1.09000 * 109.47634 * 183.23210 * 1 2 3 31 31 H 1.08995 * 109.47240 * 303.23771 * 1 2 3 32 32 H 1.09005 * 109.47098 * 63.23833 * 1 2 3 33 33 H 1.09001 * 111.00081 * 88.06789 * 4 2 1 34 34 H 1.08991 * 111.00757 * 324.24878 * 4 2 1 35 35 H 1.09004 * 110.36051 * 155.83114 * 5 4 2 36 36 H 1.08995 * 110.37049 * 278.04604 * 5 4 2 37 37 H 0.96996 * 120.00148 * 0.02562 * 11 9 7 38 38 H 1.09004 * 109.46936 * 300.00205 * 12 11 9 39 39 H 1.09004 * 109.47432 * 60.00071 * 12 11 9 40 40 H 1.09001 * 109.23021 * 320.80444 * 15 13 12 41 41 H 1.08996 * 109.23386 * 80.21414 * 15 13 12 42 42 H 0.96999 * 120.00361 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.49623 * 208.91703 * 25 16 15 44 44 H 1.09008 * 109.49378 * 329.00123 * 25 16 15 45 45 H 1.08997 * 109.43922 * 50.16970 * 26 25 16 46 46 H 1.09004 * 109.43727 * 170.08431 * 26 25 16 47 47 H 1.09001 * 108.64330 * 181.87891 * 27 26 25 48 48 H 1.08997 * 108.64113 * 299.85774 * 27 26 25 49 49 H 1.09004 * 109.88009 * 120.47714 * 29 6 5 50 50 H 1.08997 * 109.88267 * 241.63923 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 -1.2138 5 6 3.4632 -1.2507 -0.6882 6 7 3.2449 -1.5517 0.7384 7 6 3.9925 -2.3851 1.4886 8 8 3.7197 -2.5579 2.6584 9 6 5.1574 -3.0964 0.8801 10 8 5.4305 -2.9233 -0.2896 11 7 5.9053 -3.9295 1.6306 12 6 7.0476 -4.6263 1.0341 13 6 7.7198 -5.5028 2.0928 14 1 7.9852 -4.8903 2.9545 15 6 8.9967 -6.1343 1.5001 16 7 9.3974 -7.3315 2.2759 17 6 9.8375 -8.4349 1.5947 18 1 9.7368 -9.4164 2.0338 19 6 10.4131 -8.2917 0.3396 20 7 10.8157 -7.1070 -0.0686 21 14 10.6161 -9.7806 -0.7701 22 1 9.4060 -9.9359 -1.6165 23 1 11.8064 -9.5925 -1.6380 24 1 10.7976 -10.9971 0.0620 25 6 9.3452 -7.3872 3.7185 26 6 7.9475 -7.8853 4.1620 27 6 6.9364 -6.8467 3.8788 28 8 6.8309 -6.5141 2.4948 29 6 2.0771 -0.7914 1.2072 30 1 -0.3634 -1.0260 0.0579 31 1 -0.3633 0.5632 0.8595 32 1 -0.3633 0.4628 -0.9176 33 1 2.1850 -0.1518 -2.0871 34 1 1.4448 -1.6531 -1.4380 35 1 3.7951 -2.1437 -1.2179 36 1 4.1939 -0.4499 -0.8011 37 1 5.6872 -4.0676 2.5656 38 1 6.7021 -5.2519 0.2110 39 1 7.7638 -3.8952 0.6590 40 1 8.8077 -6.4232 0.4662 41 1 9.8045 -5.4031 1.5265 42 1 11.2176 -7.0068 -0.9457 43 1 10.1090 -8.0738 4.0839 44 1 9.5237 -6.3927 4.1276 45 1 7.6963 -8.7946 3.6159 46 1 7.9601 -8.0963 5.2314 47 1 5.9662 -7.2006 4.2275 48 1 7.1977 -5.9456 4.4335 49 1 1.3137 -1.4757 1.5777 50 1 2.3759 -0.1030 1.9976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150572901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:27 Heat of formation + Delta-G solvation = -103.424158 kcal Electronic energy + Delta-G solvation = -30452.035388 eV Core-core repulsion = 26286.473889 eV Total energy + Delta-G solvation = -4165.561499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94013 -40.57627 -39.79449 -38.79237 -36.92871 -36.19204 -34.23073 -33.88606 -32.92551 -30.65328 -30.52163 -28.47938 -27.30791 -27.06051 -25.26876 -24.18636 -23.10762 -22.43282 -21.62748 -21.23996 -20.84066 -19.05788 -18.73466 -18.13014 -17.83972 -17.56358 -17.10106 -16.68328 -16.64305 -16.32398 -15.84181 -15.46127 -15.40967 -14.98541 -14.74480 -14.53518 -14.44249 -14.24180 -14.13375 -13.94553 -13.87219 -13.69039 -13.42570 -13.33263 -13.02898 -12.76755 -12.76367 -12.67310 -12.44028 -12.32066 -11.99099 -11.96306 -11.81908 -11.69934 -11.52701 -11.45555 -11.39578 -10.72050 -10.55615 -10.39046 -10.27899 -9.89972 -8.67484 -7.85825 -5.30561 0.25595 1.13966 1.44695 1.47693 1.54666 2.03826 2.36359 2.52048 2.87671 3.18364 3.28432 3.54630 3.55915 3.60641 3.89283 4.01148 4.09125 4.15355 4.24773 4.27024 4.35607 4.42471 4.54042 4.56305 4.58052 4.60145 4.71708 4.76688 4.81205 4.83622 4.87594 4.91666 4.99714 5.07892 5.10645 5.12485 5.16478 5.21332 5.29760 5.30921 5.44948 5.50351 5.61468 5.70734 5.92312 6.13964 6.39991 6.53163 6.56357 6.84292 7.17369 7.93016 8.30900 9.19177 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.002434 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.929134 B =11500.697969 C =12555.092277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.101 0.899 4 C -0.124 4.124 5 C 0.089 3.911 6 N -0.589 5.589 7 C 0.520 3.480 8 O -0.546 6.546 9 C 0.505 3.495 10 O -0.536 6.536 11 N -0.681 5.681 12 C 0.135 3.865 13 C 0.072 3.928 14 H 0.073 0.927 15 C 0.174 3.826 16 N -0.603 5.603 17 C -0.260 4.260 18 H 0.061 0.939 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.960 3.040 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.270 1.270 25 C 0.148 3.852 26 C -0.169 4.169 27 C 0.067 3.933 28 O -0.379 6.379 29 C 0.101 3.899 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.417 0.583 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.249 0.751 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.483 15.887 3.015 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.120 0.880 4 C -0.162 4.162 5 C -0.033 4.033 6 N -0.322 5.322 7 C 0.303 3.697 8 O -0.425 6.425 9 C 0.286 3.714 10 O -0.414 6.414 11 N -0.333 5.333 12 C 0.011 3.989 13 C 0.012 3.988 14 H 0.091 0.909 15 C 0.048 3.952 16 N -0.325 5.325 17 C -0.390 4.390 18 H 0.079 0.921 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.789 3.211 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.021 3.979 26 C -0.209 4.209 27 C -0.009 4.009 28 O -0.297 6.297 29 C -0.021 4.021 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.416 15.825 2.609 25.184 hybrid contribution 0.793 -1.061 -0.207 1.341 sum -18.624 14.764 2.402 23.887 Atomic orbital electron populations 1.21745 0.92314 1.02347 1.03265 1.22273 0.97365 0.99486 0.92275 0.88033 1.22969 0.93784 1.00880 0.98576 1.22825 0.99293 1.02325 0.78842 1.48426 1.29113 1.41666 1.13006 1.19698 0.83736 0.80534 0.85776 1.90740 1.70975 1.64224 1.16536 1.20157 0.84014 0.80834 0.86432 1.90717 1.70264 1.64030 1.16409 1.45656 1.29320 1.43058 1.15241 1.21465 0.87125 0.94407 0.95887 1.22825 0.90424 0.88687 0.96845 0.90921 1.21376 0.90864 0.87690 0.95284 1.43812 1.74451 1.13084 1.01115 1.19439 1.31724 0.87393 1.00475 0.92133 1.25680 0.98754 0.98920 1.00980 1.70164 1.44488 1.23442 1.19816 0.85372 0.76621 0.80057 0.79039 1.21746 1.21988 1.19517 1.20907 0.95080 0.98553 0.83360 1.22139 0.97700 0.99593 1.01497 1.21609 0.99873 0.98240 0.81159 1.87471 1.58055 1.56798 1.27415 1.22431 0.86354 0.94681 0.98596 0.92781 0.91563 0.90612 0.87226 0.90409 0.89816 0.90243 0.74617 0.91845 0.89311 0.93461 0.96581 0.94160 0.93895 0.93669 0.93730 0.88570 0.88924 0.92110 0.91041 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.16 71.98 0.66 -0.31 16 2 C -0.10 -0.92 3.55 -9.59 -0.03 -0.95 16 3 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -1.36 6.53 31.99 0.21 -1.15 16 5 C 0.09 1.63 6.06 86.86 0.53 2.15 16 6 N -0.59 -13.03 3.33 -813.30 -2.71 -15.74 16 7 C 0.52 14.54 7.91 87.27 0.69 15.23 16 8 O -0.55 -17.10 16.80 -3.25 -0.05 -17.16 16 9 C 0.50 15.34 7.86 87.27 0.69 16.02 16 10 O -0.54 -17.95 13.78 -3.25 -0.04 -18.00 16 11 N -0.68 -20.28 5.49 -464.39 -2.55 -22.83 16 12 C 0.13 4.58 5.24 86.38 0.45 5.03 16 13 C 0.07 2.63 2.35 31.03 0.07 2.71 16 14 H 0.07 2.32 7.20 -2.39 -0.02 2.30 16 15 C 0.17 8.25 4.50 86.49 0.39 8.64 16 16 N -0.60 -29.82 2.58 -696.48 -1.80 -31.63 16 17 C -0.26 -14.38 9.43 84.03 0.79 -13.59 16 18 H 0.06 3.33 7.88 -2.91 -0.02 3.30 16 19 C -0.05 -2.71 4.88 84.86 0.41 -2.29 16 20 N -0.93 -54.92 10.98 21.65 0.24 -54.68 16 21 Si 0.96 45.95 29.58 68.60 2.03 47.98 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 C 0.15 5.88 5.68 87.40 0.50 6.38 16 26 C -0.17 -5.53 6.03 29.57 0.18 -5.35 16 27 C 0.07 2.02 6.05 70.32 0.43 2.44 16 28 O -0.38 -14.10 9.78 -144.90 -1.42 -15.52 16 29 C 0.10 1.62 6.47 86.74 0.56 2.18 16 30 H 0.05 0.45 8.06 -2.39 -0.02 0.43 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 35 H 0.08 1.92 6.16 -2.38 -0.01 1.90 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.42 11.45 7.93 -92.71 -0.74 10.72 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 40 H 0.05 2.57 6.24 -2.39 -0.01 2.56 16 41 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.04 1.75 7.97 -2.39 -0.02 1.73 16 44 H 0.05 1.64 8.10 -2.38 -0.02 1.62 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 46 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.06 1.55 7.26 -2.39 -0.02 1.54 16 49 H 0.07 1.20 7.77 -2.39 -0.02 1.18 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.05 393.85 0.42 -69.63 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.20 Total: 20.81 kcal Atomic # 6 Polarization: 30.60 SS G_CDS: 6.52 Total: 37.12 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -6.82 Total: -124.87 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -1.52 Total: -50.67 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.05 0.42 -69.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150572901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.792 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds