Wall clock time and date at job start Tue Mar 31 2020 23:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 110.77799 * 2 1 4 4 C 1.55152 * 110.71892 * 236.76323 * 2 1 3 5 5 C 1.54912 * 101.58052 * 206.13375 * 4 2 1 6 6 N 1.47429 * 104.83102 * 37.00767 * 5 4 2 7 7 C 1.34780 * 125.64645 * 155.89268 * 6 5 4 8 8 O 1.21348 * 119.99579 * 179.97438 * 7 6 5 9 9 C 1.49449 * 120.00000 * 359.97438 * 7 6 5 10 10 O 1.21356 * 120.00058 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00000 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00056 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46967 * 180.02562 * 12 11 9 14 14 H 1.08995 * 108.57774 * 59.99701 * 13 12 11 15 15 C 1.46922 * 108.61974 * 177.94626 * 13 12 11 16 16 N 1.50103 * 106.78232 * 178.03822 * 15 13 12 17 17 C 1.36936 * 120.74811 * 111.20400 * 16 15 13 18 18 H 1.08005 * 120.00410 * 155.69829 * 17 16 15 19 19 C 1.38807 * 120.00295 * 335.68886 * 17 16 15 20 20 N 1.31627 * 119.99890 * 340.86967 * 19 17 16 21 21 Si 1.86796 * 120.00454 * 160.86897 * 19 17 16 22 22 H 1.48502 * 109.46829 * 60.00453 * 21 19 17 23 23 H 1.48504 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47299 * 300.00515 * 21 19 17 25 25 C 1.43424 * 118.61508 * 291.15040 * 16 15 13 26 26 C 1.55323 * 116.23995 * 89.40797 * 25 16 15 27 27 C 1.55196 * 108.87178 * 319.46551 * 26 25 16 28 28 O 1.39638 * 110.56684 * 322.14191 * 27 26 25 29 29 C 1.47022 * 108.70134 * 335.87332 * 6 5 4 30 30 H 1.08993 * 109.47208 * 298.21632 * 1 2 3 31 31 H 1.09000 * 109.47230 * 58.21598 * 1 2 3 32 32 H 1.08994 * 109.46973 * 178.21142 * 1 2 3 33 33 H 1.08999 * 111.00574 * 324.20672 * 4 2 1 34 34 H 1.09004 * 111.00679 * 88.06090 * 4 2 1 35 35 H 1.09002 * 110.36853 * 155.84962 * 5 4 2 36 36 H 1.09005 * 110.37071 * 278.06144 * 5 4 2 37 37 H 0.97001 * 119.99644 * 359.97438 * 11 9 7 38 38 H 1.09007 * 109.46833 * 299.99813 * 12 11 9 39 39 H 1.08992 * 109.47177 * 59.99954 * 12 11 9 40 40 H 1.08999 * 109.98923 * 297.23159 * 15 13 12 41 41 H 1.08996 * 109.99017 * 58.59872 * 15 13 12 42 42 H 0.96996 * 119.99831 * 179.97438 * 20 19 17 43 43 H 1.09002 * 108.12636 * 327.64876 * 25 16 15 44 44 H 1.09003 * 108.12388 * 211.16821 * 25 16 15 45 45 H 1.09000 * 109.57592 * 199.64855 * 26 25 16 46 46 H 1.08998 * 109.67365 * 79.33872 * 26 25 16 47 47 H 1.08996 * 109.25846 * 201.86371 * 27 26 25 48 48 H 1.09004 * 109.22930 * 82.40378 * 27 26 25 49 49 H 1.09001 * 109.87719 * 241.63875 * 29 6 5 50 50 H 1.08996 * 109.88019 * 120.47660 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0789 -0.7954 -1.2138 5 6 3.4633 -1.2497 -0.6875 6 7 3.2445 -1.5507 0.7390 7 6 3.9922 -2.3838 1.4897 8 8 3.7190 -2.5565 2.6593 9 6 5.1576 -3.0947 0.8816 10 8 5.4305 -2.9223 -0.2883 11 7 5.9049 -3.9282 1.6321 12 6 7.0477 -4.6247 1.0361 13 6 7.7190 -5.5018 2.0949 14 1 6.9906 -6.2266 2.4581 15 6 8.8305 -6.2283 1.4661 16 7 9.4878 -7.0352 2.5477 17 6 9.4025 -8.4019 2.5516 18 1 10.1562 -8.9887 3.0556 19 6 8.3472 -9.0333 1.9078 20 7 7.2513 -8.3609 1.6258 21 14 8.4821 -10.8372 1.4417 22 1 8.6934 -11.6503 2.6662 23 1 7.2300 -11.2701 0.7707 24 1 9.6297 -11.0254 0.5184 25 6 10.2089 -6.3450 3.5776 26 6 9.3880 -5.9261 4.8279 27 6 8.0003 -5.4067 4.3664 28 8 8.1191 -4.6751 3.1829 29 6 2.0760 -0.7911 1.2072 30 1 -0.3633 0.4858 0.9055 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0271 -0.0321 33 1 1.4452 -1.6535 -1.4375 34 1 2.1850 -0.1518 -2.0871 35 1 3.7960 -2.1425 -1.2169 36 1 4.1937 -0.4485 -0.8002 37 1 5.6866 -4.0663 2.5671 38 1 6.7028 -5.2498 0.2124 39 1 7.7641 -3.8934 0.6621 40 1 8.4501 -6.8908 0.6885 41 1 9.5433 -5.5225 1.0398 42 1 6.5140 -8.8021 1.1757 43 1 10.6456 -5.4464 3.1419 44 1 11.0260 -6.9866 3.9077 45 1 9.9146 -5.1353 5.3623 46 1 9.2560 -6.7856 5.4851 47 1 7.5790 -4.7683 5.1428 48 1 7.3368 -6.2552 4.1994 49 1 2.3741 -0.1024 1.9977 50 1 1.3130 -1.4758 1.5775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150572902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:32 Heat of formation + Delta-G solvation = -77.972631 kcal Electronic energy + Delta-G solvation = -30811.402826 eV Core-core repulsion = 26646.944988 eV Total energy + Delta-G solvation = -4164.457838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.73042 -39.29080 -38.55081 -37.67679 -35.07578 -34.71253 -33.11864 -32.16146 -31.18529 -29.90419 -28.77058 -27.48429 -25.89162 -25.31895 -24.00787 -22.86375 -21.90297 -20.85580 -20.57414 -19.73316 -19.55382 -17.84910 -17.08295 -16.88734 -16.56417 -16.03819 -15.47960 -15.44004 -14.88574 -14.69656 -14.41264 -14.13660 -14.03650 -13.88064 -13.70021 -13.36433 -13.18760 -13.09873 -12.99730 -12.73071 -12.52411 -12.26940 -12.08242 -11.98158 -11.60216 -11.42319 -11.27805 -11.24304 -11.13037 -10.87430 -10.83605 -10.75938 -10.49985 -10.15758 -9.96920 -9.69072 -9.54927 -9.38348 -8.97535 -8.81556 -8.77343 -8.51566 -6.83494 -5.93225 -3.31828 1.55614 2.34497 3.33679 3.34466 3.40270 3.41980 3.58680 4.14176 4.29758 4.42744 4.46200 4.57703 4.71539 4.97818 5.02746 5.07168 5.21014 5.27400 5.28307 5.34497 5.47996 5.60787 5.62280 5.67420 5.74756 5.75928 5.82873 5.91054 5.92645 5.93882 6.01556 6.10929 6.31176 6.36993 6.41961 6.47209 6.66996 6.70400 6.77545 6.85420 6.95350 7.07838 7.10356 7.29580 7.42842 7.70944 7.82961 8.11458 8.19131 8.31197 9.05989 9.74015 10.28400 11.16095 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002581 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.299321 B =10846.835430 C =11641.145878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.133 4.133 5 C 0.096 3.904 6 N -0.595 5.595 7 C 0.521 3.479 8 O -0.521 6.521 9 C 0.505 3.495 10 O -0.528 6.528 11 N -0.678 5.678 12 C 0.119 3.881 13 C 0.059 3.941 14 H 0.109 0.891 15 C 0.143 3.857 16 N -0.587 5.587 17 C -0.249 4.249 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.905 3.095 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.160 3.840 26 C -0.171 4.171 27 C 0.066 3.934 28 O -0.369 6.369 29 C 0.109 3.891 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.020 0.980 42 H 0.256 0.744 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 15.622 -3.453 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.171 4.171 5 C -0.026 4.026 6 N -0.330 5.330 7 C 0.304 3.696 8 O -0.397 6.397 9 C 0.285 3.715 10 O -0.406 6.406 11 N -0.329 5.329 12 C -0.005 4.005 13 C 0.000 4.000 14 H 0.126 0.874 15 C 0.018 3.982 16 N -0.307 5.307 17 C -0.378 4.378 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.032 3.968 26 C -0.213 4.213 27 C -0.011 4.011 28 O -0.288 6.288 29 C -0.014 4.014 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.249 0.751 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.397 15.671 -3.710 19.169 hybrid contribution -0.217 -1.204 0.414 1.292 sum -10.615 14.467 -3.296 18.244 Atomic orbital electron populations 1.21752 0.93603 1.02392 1.02191 1.22252 0.96489 0.99432 0.94298 0.89530 1.22969 0.96120 1.00377 0.97627 1.22674 0.96890 1.02935 0.80080 1.48243 1.29308 1.43125 1.12303 1.20043 0.83739 0.79898 0.85904 1.90763 1.70199 1.62909 1.15820 1.19851 0.83848 0.81169 0.86672 1.90685 1.70213 1.63855 1.15808 1.45773 1.29219 1.42863 1.15042 1.21902 0.86075 0.95415 0.97075 1.22245 0.99125 0.90965 0.87616 0.87367 1.20737 0.91827 0.92946 0.92651 1.44085 1.61768 1.02516 1.22330 1.19224 1.04988 0.81399 1.32206 0.91289 1.24904 0.94521 0.97967 1.02190 1.69852 1.03946 1.36334 1.45250 0.86315 0.76849 0.84798 0.78490 1.21042 1.21652 1.21087 1.20375 0.93124 0.94928 0.88419 1.23578 0.98023 0.99254 1.00426 1.22362 0.96956 0.95055 0.86762 1.87513 1.88256 1.37391 1.15636 1.22131 0.87481 0.94707 0.97042 0.92230 0.91982 0.92211 0.90367 0.89597 0.87797 0.90938 0.75106 0.89725 0.91334 0.87749 0.96140 0.93389 0.95004 0.94884 0.93170 0.92465 0.92914 0.91833 0.91075 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.13 37.16 0.34 -0.43 16 2 C -0.11 -0.72 3.55 -88.79 -0.31 -1.03 16 3 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 4 C -0.13 -0.96 6.53 -24.58 -0.16 -1.12 16 5 C 0.10 1.00 6.06 -2.53 -0.02 0.99 16 6 N -0.59 -7.45 3.33 -171.02 -0.57 -8.02 16 7 C 0.52 8.12 7.91 -11.58 -0.09 8.03 16 8 O -0.52 -9.18 16.80 5.50 0.09 -9.09 16 9 C 0.50 8.39 7.86 -11.58 -0.09 8.30 16 10 O -0.53 -9.20 13.78 5.49 0.08 -9.12 16 11 N -0.68 -11.59 5.41 -60.73 -0.33 -11.92 16 12 C 0.12 2.16 5.25 -4.05 -0.02 2.14 16 13 C 0.06 1.20 1.98 -29.64 -0.06 1.15 16 14 H 0.11 2.49 5.24 -51.93 -0.27 2.22 16 15 C 0.14 3.20 4.71 -4.94 -0.02 3.17 16 16 N -0.59 -13.97 2.61 -174.52 -0.46 -14.43 16 17 C -0.25 -6.44 9.62 -15.06 -0.14 -6.59 16 18 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 19 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 20 N -0.91 -23.61 9.56 55.49 0.53 -23.07 16 21 Si 0.91 20.82 29.59 -169.99 -5.03 15.78 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.16 3.38 5.32 -4.44 -0.02 3.36 16 26 C -0.17 -3.24 6.75 -24.34 -0.16 -3.41 16 27 C 0.07 1.28 6.38 38.32 0.24 1.52 16 28 O -0.37 -7.35 9.44 -31.93 -0.30 -7.65 16 29 C 0.11 1.06 6.46 -3.07 -0.02 1.04 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.26 6.16 -51.93 -0.32 0.94 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.41 7.06 7.73 -40.82 -0.32 6.74 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 44 H 0.03 0.69 7.96 -51.93 -0.41 0.27 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.06 1.37 6.66 -51.93 -0.35 1.02 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.73 7.82 -51.93 -0.41 0.33 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -28.57 389.92 -9.00 -37.57 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.26 Total: 7.00 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: -0.63 Total: 17.08 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.82 Total: -57.45 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.13 Total: -25.86 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.57 -9.00 -37.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150572902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.404 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds