Wall clock time and date at job start Tue Mar 31 2020 23:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 110.77799 * 2 1 4 4 C 1.55152 * 110.71892 * 236.76323 * 2 1 3 5 5 C 1.54912 * 101.58052 * 206.13375 * 4 2 1 6 6 N 1.47429 * 104.83102 * 37.00767 * 5 4 2 7 7 C 1.34780 * 125.64645 * 155.89268 * 6 5 4 8 8 O 1.21348 * 119.99579 * 179.97438 * 7 6 5 9 9 C 1.49449 * 120.00000 * 359.97438 * 7 6 5 10 10 O 1.21356 * 120.00058 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00000 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00056 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46967 * 180.02562 * 12 11 9 14 14 H 1.08995 * 108.57774 * 59.99701 * 13 12 11 15 15 C 1.46922 * 108.61974 * 177.94626 * 13 12 11 16 16 N 1.50103 * 106.78232 * 178.03822 * 15 13 12 17 17 C 1.36936 * 120.74811 * 111.20400 * 16 15 13 18 18 H 1.08005 * 120.00410 * 155.69829 * 17 16 15 19 19 C 1.38807 * 120.00295 * 335.68886 * 17 16 15 20 20 N 1.31627 * 119.99890 * 340.86967 * 19 17 16 21 21 Si 1.86796 * 120.00454 * 160.86897 * 19 17 16 22 22 H 1.48502 * 109.46829 * 60.00453 * 21 19 17 23 23 H 1.48504 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47299 * 300.00515 * 21 19 17 25 25 C 1.43424 * 118.61508 * 291.15040 * 16 15 13 26 26 C 1.55323 * 116.23995 * 89.40797 * 25 16 15 27 27 C 1.55196 * 108.87178 * 319.46551 * 26 25 16 28 28 O 1.39638 * 110.56684 * 322.14191 * 27 26 25 29 29 C 1.47022 * 108.70134 * 335.87332 * 6 5 4 30 30 H 1.08993 * 109.47208 * 298.21632 * 1 2 3 31 31 H 1.09000 * 109.47230 * 58.21598 * 1 2 3 32 32 H 1.08994 * 109.46973 * 178.21142 * 1 2 3 33 33 H 1.08999 * 111.00574 * 324.20672 * 4 2 1 34 34 H 1.09004 * 111.00679 * 88.06090 * 4 2 1 35 35 H 1.09002 * 110.36853 * 155.84962 * 5 4 2 36 36 H 1.09005 * 110.37071 * 278.06144 * 5 4 2 37 37 H 0.97001 * 119.99644 * 359.97438 * 11 9 7 38 38 H 1.09007 * 109.46833 * 299.99813 * 12 11 9 39 39 H 1.08992 * 109.47177 * 59.99954 * 12 11 9 40 40 H 1.08999 * 109.98923 * 297.23159 * 15 13 12 41 41 H 1.08996 * 109.99017 * 58.59872 * 15 13 12 42 42 H 0.96996 * 119.99831 * 179.97438 * 20 19 17 43 43 H 1.09002 * 108.12636 * 327.64876 * 25 16 15 44 44 H 1.09003 * 108.12388 * 211.16821 * 25 16 15 45 45 H 1.09000 * 109.57592 * 199.64855 * 26 25 16 46 46 H 1.08998 * 109.67365 * 79.33872 * 26 25 16 47 47 H 1.08996 * 109.25846 * 201.86371 * 27 26 25 48 48 H 1.09004 * 109.22930 * 82.40378 * 27 26 25 49 49 H 1.09001 * 109.87719 * 241.63875 * 29 6 5 50 50 H 1.08996 * 109.88019 * 120.47660 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0789 -0.7954 -1.2138 5 6 3.4633 -1.2497 -0.6875 6 7 3.2445 -1.5507 0.7390 7 6 3.9922 -2.3838 1.4897 8 8 3.7190 -2.5565 2.6593 9 6 5.1576 -3.0947 0.8816 10 8 5.4305 -2.9223 -0.2883 11 7 5.9049 -3.9282 1.6321 12 6 7.0477 -4.6247 1.0361 13 6 7.7190 -5.5018 2.0949 14 1 6.9906 -6.2266 2.4581 15 6 8.8305 -6.2283 1.4661 16 7 9.4878 -7.0352 2.5477 17 6 9.4025 -8.4019 2.5516 18 1 10.1562 -8.9887 3.0556 19 6 8.3472 -9.0333 1.9078 20 7 7.2513 -8.3609 1.6258 21 14 8.4821 -10.8372 1.4417 22 1 8.6934 -11.6503 2.6662 23 1 7.2300 -11.2701 0.7707 24 1 9.6297 -11.0254 0.5184 25 6 10.2089 -6.3450 3.5776 26 6 9.3880 -5.9261 4.8279 27 6 8.0003 -5.4067 4.3664 28 8 8.1191 -4.6751 3.1829 29 6 2.0760 -0.7911 1.2072 30 1 -0.3633 0.4858 0.9055 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0271 -0.0321 33 1 1.4452 -1.6535 -1.4375 34 1 2.1850 -0.1518 -2.0871 35 1 3.7960 -2.1425 -1.2169 36 1 4.1937 -0.4485 -0.8002 37 1 5.6866 -4.0663 2.5671 38 1 6.7028 -5.2498 0.2124 39 1 7.7641 -3.8934 0.6621 40 1 8.4501 -6.8908 0.6885 41 1 9.5433 -5.5225 1.0398 42 1 6.5140 -8.8021 1.1757 43 1 10.6456 -5.4464 3.1419 44 1 11.0260 -6.9866 3.9077 45 1 9.9146 -5.1353 5.3623 46 1 9.2560 -6.7856 5.4851 47 1 7.5790 -4.7683 5.1428 48 1 7.3368 -6.2552 4.1994 49 1 2.3741 -0.1024 1.9977 50 1 1.3130 -1.4758 1.5775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150572902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:31 Heat of formation + Delta-G solvation = -96.036659 kcal Electronic energy + Delta-G solvation = -30812.186141 eV Core-core repulsion = 26646.944988 eV Total energy + Delta-G solvation = -4165.241153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92412 -40.77358 -39.79731 -38.78525 -36.81950 -36.17098 -34.03803 -33.77916 -32.96784 -30.64527 -30.41855 -28.50877 -27.27249 -27.07818 -25.20775 -24.19817 -23.12955 -22.45517 -21.35470 -21.24996 -20.88729 -19.09501 -18.76977 -18.13066 -17.76407 -17.49723 -16.89005 -16.66481 -16.60362 -16.15852 -15.96667 -15.53553 -15.37550 -14.90849 -14.80120 -14.67303 -14.45094 -14.23168 -14.11196 -13.94225 -13.71078 -13.59324 -13.42296 -13.27930 -12.96653 -12.74422 -12.66029 -12.61105 -12.52805 -12.31348 -11.95273 -11.93132 -11.78460 -11.69469 -11.52574 -11.39718 -11.21069 -10.67423 -10.56237 -10.32858 -10.26860 -9.88823 -8.71855 -7.89241 -5.29947 0.27936 1.18968 1.48936 1.52126 1.57441 2.06279 2.42348 2.53138 3.06950 3.24646 3.28007 3.49748 3.56884 3.61190 3.89640 4.08918 4.24687 4.27415 4.35048 4.36398 4.37332 4.52370 4.56669 4.60382 4.71979 4.73543 4.75034 4.77640 4.82636 4.88204 4.94102 5.03051 5.06485 5.09073 5.13478 5.16814 5.17791 5.24627 5.31135 5.33268 5.39681 5.45142 5.48355 5.68345 5.95587 6.16914 6.36861 6.47750 6.58189 6.86685 7.11328 7.83436 8.36233 9.16712 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002581 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.299321 B =10846.835430 C =11641.145878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.102 0.898 4 C -0.123 4.123 5 C 0.089 3.911 6 N -0.589 5.589 7 C 0.518 3.482 8 O -0.549 6.549 9 C 0.505 3.495 10 O -0.537 6.537 11 N -0.679 5.679 12 C 0.132 3.868 13 C 0.076 3.924 14 H 0.082 0.918 15 C 0.145 3.855 16 N -0.601 5.601 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.037 4.037 20 N -0.919 5.919 21 Si 0.961 3.039 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.284 1.284 25 C 0.154 3.846 26 C -0.164 4.164 27 C 0.067 3.933 28 O -0.368 6.368 29 C 0.100 3.900 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.251 0.749 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.035 0.965 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 17.383 -3.769 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.120 0.880 4 C -0.161 4.161 5 C -0.032 4.032 6 N -0.322 5.322 7 C 0.300 3.700 8 O -0.428 6.428 9 C 0.285 3.715 10 O -0.415 6.415 11 N -0.330 5.330 12 C 0.008 3.992 13 C 0.017 3.983 14 H 0.100 0.900 15 C 0.021 3.979 16 N -0.322 5.322 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.234 4.234 20 N -0.564 5.564 21 Si 0.790 3.210 22 H -0.209 1.209 23 H -0.221 1.221 24 H -0.210 1.210 25 C 0.026 3.974 26 C -0.205 4.205 27 C -0.010 4.010 28 O -0.286 6.286 29 C -0.022 4.022 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.054 0.946 49 H 0.091 0.909 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.157 17.469 -4.043 21.119 hybrid contribution 0.038 -1.703 0.494 1.773 sum -11.120 15.766 -3.549 19.617 Atomic orbital electron populations 1.21743 0.92316 1.02379 1.03219 1.22265 0.97364 0.99483 0.92228 0.87958 1.22973 0.93745 1.00852 0.98536 1.22838 0.99312 1.02367 0.78723 1.48427 1.29037 1.41695 1.13078 1.19792 0.83829 0.80575 0.85769 1.90744 1.71007 1.64262 1.16787 1.20106 0.84026 0.80861 0.86476 1.90681 1.70540 1.64157 1.16144 1.45705 1.29134 1.43093 1.15086 1.21635 0.86462 0.95127 0.96025 1.21836 0.97751 0.90776 0.87958 0.90014 1.20672 0.92502 0.92643 0.92123 1.44225 1.62243 1.02252 1.23498 1.19376 1.04875 0.82608 1.32432 0.91850 1.25488 0.94436 1.00951 1.02475 1.69993 1.04002 1.37078 1.45349 0.85454 0.76317 0.81290 0.77941 1.20861 1.22092 1.21021 1.20490 0.93206 0.94877 0.88821 1.23495 0.97619 1.00019 0.99364 1.22392 0.96807 0.94673 0.87150 1.87506 1.88267 1.37143 1.15703 1.22423 0.86353 0.94678 0.98717 0.91706 0.90439 0.92813 0.90424 0.87028 0.89705 0.90218 0.75089 0.90540 0.90775 0.90028 0.95151 0.93978 0.94473 0.94953 0.90344 0.92778 0.90127 0.94630 0.90929 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.13 71.98 0.66 -0.48 16 2 C -0.09 -1.03 3.55 -9.61 -0.03 -1.07 16 3 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.12 -1.46 6.53 31.99 0.21 -1.26 16 5 C 0.09 1.74 6.06 86.86 0.53 2.27 16 6 N -0.59 -14.36 3.33 -813.36 -2.71 -17.06 16 7 C 0.52 16.18 7.91 87.27 0.69 16.88 16 8 O -0.55 -19.55 16.80 -3.24 -0.05 -19.60 16 9 C 0.50 16.90 7.86 87.27 0.69 17.59 16 10 O -0.54 -18.74 13.78 -3.26 -0.04 -18.79 16 11 N -0.68 -23.50 5.41 -464.41 -2.51 -26.01 16 12 C 0.13 4.83 5.25 86.38 0.45 5.28 16 13 C 0.08 3.12 1.98 28.71 0.06 3.18 16 14 H 0.08 3.88 5.24 -2.39 -0.01 3.87 16 15 C 0.15 6.57 4.71 83.79 0.39 6.96 16 16 N -0.60 -28.81 2.61 -706.05 -1.84 -30.66 16 17 C -0.26 -13.77 9.62 84.03 0.81 -12.96 16 18 H 0.06 3.32 7.88 -2.91 -0.02 3.29 16 19 C -0.04 -1.94 4.93 84.86 0.42 -1.53 16 20 N -0.92 -48.75 9.56 21.65 0.21 -48.54 16 21 Si 0.96 43.23 29.59 68.60 2.03 45.26 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 C 0.15 6.39 5.32 87.75 0.47 6.86 16 26 C -0.16 -5.97 6.75 32.15 0.22 -5.75 16 27 C 0.07 2.54 6.38 72.74 0.46 3.00 16 28 O -0.37 -14.38 9.44 -137.16 -1.29 -15.68 16 29 C 0.10 1.81 6.46 86.73 0.56 2.38 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.52 8.13 -2.39 -0.02 0.50 16 33 H 0.08 0.96 8.04 -2.39 -0.02 0.94 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 2.02 6.16 -2.39 -0.01 2.00 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.41 14.34 7.73 -92.71 -0.72 13.63 16 38 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.08 4.07 6.03 -2.39 -0.01 4.06 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 43 H 0.04 1.48 7.98 -2.39 -0.02 1.46 16 44 H 0.03 1.32 7.96 -2.39 -0.02 1.30 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.04 1.55 6.66 -2.38 -0.02 1.53 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.33 7.82 -2.39 -0.02 1.32 16 Total: -1.00 -61.42 389.92 0.58 -60.84 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.22 Total: 28.90 kcal Atomic # 6 Polarization: 34.77 SS G_CDS: 6.57 Total: 41.35 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -6.85 Total: -122.28 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -1.39 Total: -54.07 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.42 0.58 -60.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150572902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.196 kcal (2) G-P(sol) polarization free energy of solvation -61.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds