Wall clock time and date at job start Tue Mar 31 2020 23:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.89211 * 2 1 4 4 C 1.55158 * 111.00592 * 123.92821 * 2 1 3 5 5 C 1.54330 * 103.02444 * 153.37884 * 4 2 1 6 6 N 1.47024 * 107.26565 * 338.14331 * 5 4 2 7 7 C 1.34775 * 125.65036 * 178.85106 * 6 5 4 8 8 O 1.21348 * 119.99856 * 179.68680 * 7 6 5 9 9 C 1.49446 * 119.99970 * 359.68841 * 7 6 5 10 10 O 1.21348 * 120.00173 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00237 * 180.02562 * 9 7 6 12 12 C 1.46494 * 120.00203 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47238 * 179.97438 * 12 11 9 14 14 H 1.09001 * 108.56655 * 60.00210 * 13 12 11 15 15 C 1.46913 * 108.62319 * 177.94392 * 13 12 11 16 16 N 1.50108 * 106.78112 * 177.78209 * 15 13 12 17 17 C 1.36941 * 120.63804 * 111.36911 * 16 15 13 18 18 H 1.08001 * 119.99845 * 320.49708 * 17 16 15 19 19 C 1.38808 * 120.00100 * 140.49621 * 17 16 15 20 20 N 1.31624 * 120.00276 * 156.56923 * 19 17 16 21 21 Si 1.86802 * 120.00115 * 336.56976 * 19 17 16 22 22 H 1.48498 * 109.47188 * 95.55038 * 21 19 17 23 23 H 1.48496 * 109.47379 * 215.55303 * 21 19 17 24 24 H 1.48502 * 109.46939 * 335.55389 * 21 19 17 25 25 C 1.43427 * 118.73117 * 291.35334 * 16 15 13 26 26 C 1.55328 * 116.23907 * 89.34597 * 25 16 15 27 27 C 1.55183 * 108.87644 * 319.46723 * 26 25 16 28 28 O 1.39501 * 110.46104 * 322.18773 * 27 26 25 29 29 C 1.47427 * 108.69927 * 358.58078 * 6 5 4 30 30 H 1.08996 * 109.47141 * 182.42481 * 1 2 3 31 31 H 1.08999 * 109.46714 * 302.42381 * 1 2 3 32 32 H 1.08995 * 109.47256 * 62.42449 * 1 2 3 33 33 H 1.09004 * 110.71867 * 271.93596 * 4 2 1 34 34 H 1.09001 * 110.71937 * 35.03116 * 4 2 1 35 35 H 1.08997 * 109.99570 * 218.67015 * 5 4 2 36 36 H 1.08996 * 109.78175 * 97.49475 * 5 4 2 37 37 H 0.97002 * 119.99544 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.47235 * 59.99877 * 12 11 9 39 39 H 1.08996 * 109.47424 * 299.99949 * 12 11 9 40 40 H 1.09006 * 109.99203 * 297.09815 * 15 13 12 41 41 H 1.09003 * 109.99348 * 58.46552 * 15 13 12 42 42 H 0.96998 * 120.00303 * 179.97438 * 20 19 17 43 43 H 1.08996 * 108.12748 * 211.10815 * 25 16 15 44 44 H 1.09005 * 108.12312 * 327.80220 * 25 16 15 45 45 H 1.09003 * 109.56704 * 79.28812 * 26 25 16 46 46 H 1.08999 * 109.56931 * 199.52466 * 26 25 16 47 47 H 1.09000 * 109.25490 * 82.42575 * 27 26 25 48 48 H 1.09004 * 109.25475 * 201.90208 * 27 26 25 49 49 H 1.09007 * 110.36138 * 143.19829 * 29 6 5 50 50 H 1.09001 * 110.37087 * 265.40998 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0861 -0.8085 1.2018 5 6 3.4657 -1.2798 0.6954 6 7 3.4271 -1.2428 -0.7739 7 6 4.4476 -1.5610 -1.5947 8 8 4.3005 -1.4992 -2.7977 9 6 5.7602 -1.9900 -1.0234 10 8 5.9074 -2.0514 0.1795 11 7 6.7809 -2.3078 -1.8442 12 6 8.0678 -2.7278 -1.2842 13 6 9.0454 -3.0285 -2.4221 14 1 9.1763 -2.1236 -3.0155 15 6 10.3425 -3.3996 -1.8404 16 7 11.2506 -3.7381 -2.9867 17 6 12.3137 -2.9323 -3.2963 18 1 12.2114 -1.8586 -3.2417 19 6 13.5229 -3.4956 -3.6803 20 7 14.3745 -2.7978 -4.4015 21 14 13.9414 -5.2442 -3.1736 22 1 13.5772 -6.1778 -4.2695 23 1 15.3976 -5.3454 -2.9006 24 1 13.1821 -5.5995 -1.9478 25 6 10.9837 -4.9218 -3.7514 26 6 10.0331 -4.7534 -4.9683 27 6 8.8714 -3.8047 -4.5703 28 8 8.4807 -4.0385 -3.2517 29 6 2.0852 -0.8062 -1.2006 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 2.1922 -0.1708 2.0795 34 1 1.4450 -1.6620 1.4222 35 1 3.6600 -2.2969 1.0355 36 1 4.2424 -0.6091 1.0627 37 1 6.6634 -2.2583 -2.8058 38 1 7.9262 -3.6244 -0.6808 39 1 8.4703 -1.9299 -0.6603 40 1 10.7514 -2.5613 -1.2761 41 1 10.2249 -4.2662 -1.1898 42 1 15.2196 -3.1913 -4.6695 43 1 11.9342 -5.3120 -4.1151 44 1 10.5475 -5.6653 -3.0843 45 1 10.5841 -4.3249 -5.8054 46 1 9.6314 -5.7253 -5.2549 47 1 9.2015 -2.7707 -4.6698 48 1 8.0235 -3.9768 -5.2334 49 1 2.1560 -0.1711 -2.0838 50 1 1.4524 -1.6698 -1.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150572904.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:39 Heat of formation + Delta-G solvation = -75.562066 kcal Electronic energy + Delta-G solvation = -30338.507182 eV Core-core repulsion = 26174.153874 eV Total energy + Delta-G solvation = -4164.353308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.94580 -39.66722 -38.83427 -37.86416 -35.41287 -34.99763 -33.29881 -32.28169 -31.76785 -30.05854 -29.12713 -27.67559 -26.26333 -25.52073 -24.20819 -22.92388 -21.94155 -21.27393 -20.82001 -20.19073 -19.82610 -18.07432 -17.14903 -17.08186 -16.68526 -16.16007 -15.84371 -15.68374 -15.60280 -14.94805 -14.57675 -14.46331 -14.14929 -14.06151 -13.85453 -13.76884 -13.38522 -13.16775 -13.07581 -12.92960 -12.75398 -12.48640 -12.40277 -12.24741 -11.92263 -11.81156 -11.66379 -11.43478 -11.28004 -11.17224 -11.08669 -10.79094 -10.53397 -10.40004 -10.23742 -9.75947 -9.71413 -9.61095 -9.26634 -9.03876 -9.01673 -8.53387 -6.86670 -6.07950 -3.52674 1.32489 2.11842 3.10574 3.30171 3.32688 3.44298 3.51259 3.98015 4.16037 4.19835 4.34983 4.36358 4.47660 4.71163 4.85106 4.87888 4.97263 5.14345 5.14897 5.22134 5.30481 5.31288 5.33982 5.44474 5.50736 5.56564 5.61824 5.65476 5.69160 5.73745 5.76481 5.84751 5.88715 5.91105 5.96827 6.11560 6.23815 6.27563 6.46530 6.55775 6.58955 6.78174 6.84394 6.87461 7.15494 7.56999 7.61873 7.91310 8.00434 8.26830 8.91872 9.62892 10.07264 11.06830 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.002151 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.259232 B =13015.857559 C =13360.274050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.132 4.132 5 C 0.107 3.893 6 N -0.595 5.595 7 C 0.521 3.479 8 O -0.521 6.521 9 C 0.506 3.494 10 O -0.522 6.522 11 N -0.686 5.686 12 C 0.114 3.886 13 C 0.061 3.939 14 H 0.071 0.929 15 C 0.113 3.887 16 N -0.598 5.598 17 C -0.275 4.275 18 H 0.076 0.924 19 C 0.042 3.958 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.152 3.848 26 C -0.169 4.169 27 C 0.065 3.935 28 O -0.355 6.355 29 C 0.107 3.893 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.264 0.736 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.913 3.885 8.920 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.170 4.170 5 C -0.015 4.015 6 N -0.329 5.329 7 C 0.304 3.696 8 O -0.396 6.396 9 C 0.286 3.714 10 O -0.399 6.399 11 N -0.338 5.338 12 C -0.009 4.009 13 C 0.001 3.999 14 H 0.089 0.911 15 C -0.012 4.012 16 N -0.320 5.320 17 C -0.403 4.403 18 H 0.094 0.906 19 C -0.159 4.159 20 N -0.534 5.534 21 Si 0.709 3.291 22 H -0.213 1.213 23 H -0.228 1.228 24 H -0.194 1.194 25 C 0.024 3.976 26 C -0.210 4.210 27 C -0.013 4.013 28 O -0.273 6.273 29 C -0.015 4.015 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.694 3.709 9.084 27.504 hybrid contribution 0.561 -0.871 -0.455 1.132 sum -25.133 2.838 8.629 26.724 Atomic orbital electron populations 1.21693 0.93397 1.02390 1.02364 1.22384 0.96434 0.99527 0.94274 0.89478 1.22833 0.95666 1.00365 0.98136 1.22203 0.97818 1.03050 0.78475 1.48240 1.11758 1.64905 1.08033 1.19954 0.84662 0.78846 0.86101 1.90776 1.82775 1.52030 1.14047 1.19888 0.85083 0.79464 0.86939 1.90741 1.82842 1.52173 1.14142 1.45713 1.11682 1.65169 1.11222 1.21892 0.81580 1.00871 0.96605 1.22033 0.93627 0.91606 0.92599 0.91061 1.21033 0.89016 1.00185 0.90956 1.44090 1.30431 1.28517 1.28989 1.18692 0.87901 0.90238 1.43509 0.90619 1.25523 0.95593 0.97617 0.97207 1.69884 1.10452 1.38287 1.34769 0.86876 0.76484 0.86051 0.79680 1.21323 1.22844 1.19370 1.20631 0.96256 0.88982 0.91730 1.23504 0.97517 0.98871 1.01070 1.22419 0.96114 0.99466 0.83262 1.87563 1.70781 1.50971 1.18033 1.22439 0.82151 0.98711 0.98151 0.92191 0.91902 0.92118 0.89691 0.90355 0.90269 0.90151 0.74940 0.90204 0.89642 0.89959 0.93745 0.92577 0.93896 0.94935 0.91539 0.92610 0.92288 0.91933 0.89955 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.29 37.16 0.35 -0.21 16 2 C -0.11 -0.59 3.64 -88.47 -0.32 -0.91 16 3 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -0.73 6.42 -24.89 -0.16 -0.89 16 5 C 0.11 0.92 5.49 -3.06 -0.02 0.91 16 6 N -0.59 -6.27 3.33 -171.02 -0.57 -6.84 16 7 C 0.52 6.89 7.91 -11.59 -0.09 6.79 16 8 O -0.52 -7.94 16.73 5.50 0.09 -7.85 16 9 C 0.51 6.95 7.86 -11.59 -0.09 6.86 16 10 O -0.52 -7.71 14.12 5.50 0.08 -7.64 16 11 N -0.69 -9.23 5.41 -60.74 -0.33 -9.56 16 12 C 0.11 1.57 5.25 -4.04 -0.02 1.54 16 13 C 0.06 0.97 2.13 -29.64 -0.06 0.91 16 14 H 0.07 1.18 6.77 -51.93 -0.35 0.82 16 15 C 0.11 2.10 5.58 -4.94 -0.03 2.07 16 16 N -0.60 -13.66 2.16 -174.51 -0.38 -14.04 16 17 C -0.28 -7.38 9.93 -15.06 -0.15 -7.53 16 18 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 19 C 0.04 1.19 5.27 -17.43 -0.09 1.10 16 20 N -0.89 -26.61 13.97 55.49 0.78 -25.83 16 21 Si 0.88 22.06 25.24 -169.99 -4.29 17.77 16 22 H -0.29 -7.04 6.74 56.52 0.38 -6.66 16 23 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.15 3.31 4.30 -4.43 -0.02 3.29 16 26 C -0.17 -3.16 6.75 -24.34 -0.16 -3.32 16 27 C 0.06 1.08 6.38 38.31 0.24 1.33 16 28 O -0.36 -5.98 9.42 -31.52 -0.30 -6.28 16 29 C 0.11 0.86 6.37 -2.53 -0.02 0.84 16 30 H 0.06 0.23 8.11 -51.93 -0.42 -0.19 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.38 8.01 -51.93 -0.42 -0.04 16 35 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 36 H 0.08 0.75 7.57 -51.93 -0.39 0.36 16 37 H 0.41 5.52 7.73 -40.82 -0.32 5.20 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.46 8.00 -51.93 -0.42 1.05 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.04 1.03 3.45 -51.93 -0.18 0.85 16 44 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.03 6.66 -51.93 -0.35 0.68 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 50 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -31.91 389.75 -7.98 -39.89 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.29 Total: 1.72 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -0.64 Total: 12.79 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.50 Total: -56.27 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.13 Total: -21.77 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.29 Total: 17.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.91 -7.98 -39.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150572904.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.672 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds