Wall clock time and date at job start Tue Mar 31 2020 23:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.89211 * 2 1 4 4 C 1.55158 * 111.00592 * 123.92821 * 2 1 3 5 5 C 1.54330 * 103.02444 * 153.37884 * 4 2 1 6 6 N 1.47024 * 107.26565 * 338.14331 * 5 4 2 7 7 C 1.34775 * 125.65036 * 178.85106 * 6 5 4 8 8 O 1.21348 * 119.99856 * 179.68680 * 7 6 5 9 9 C 1.49446 * 119.99970 * 359.68841 * 7 6 5 10 10 O 1.21348 * 120.00173 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00237 * 180.02562 * 9 7 6 12 12 C 1.46494 * 120.00203 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47238 * 179.97438 * 12 11 9 14 14 H 1.09001 * 108.56655 * 60.00210 * 13 12 11 15 15 C 1.46913 * 108.62319 * 177.94392 * 13 12 11 16 16 N 1.50108 * 106.78112 * 177.78209 * 15 13 12 17 17 C 1.36941 * 120.63804 * 111.36911 * 16 15 13 18 18 H 1.08001 * 119.99845 * 320.49708 * 17 16 15 19 19 C 1.38808 * 120.00100 * 140.49621 * 17 16 15 20 20 N 1.31624 * 120.00276 * 156.56923 * 19 17 16 21 21 Si 1.86802 * 120.00115 * 336.56976 * 19 17 16 22 22 H 1.48498 * 109.47188 * 95.55038 * 21 19 17 23 23 H 1.48496 * 109.47379 * 215.55303 * 21 19 17 24 24 H 1.48502 * 109.46939 * 335.55389 * 21 19 17 25 25 C 1.43427 * 118.73117 * 291.35334 * 16 15 13 26 26 C 1.55328 * 116.23907 * 89.34597 * 25 16 15 27 27 C 1.55183 * 108.87644 * 319.46723 * 26 25 16 28 28 O 1.39501 * 110.46104 * 322.18773 * 27 26 25 29 29 C 1.47427 * 108.69927 * 358.58078 * 6 5 4 30 30 H 1.08996 * 109.47141 * 182.42481 * 1 2 3 31 31 H 1.08999 * 109.46714 * 302.42381 * 1 2 3 32 32 H 1.08995 * 109.47256 * 62.42449 * 1 2 3 33 33 H 1.09004 * 110.71867 * 271.93596 * 4 2 1 34 34 H 1.09001 * 110.71937 * 35.03116 * 4 2 1 35 35 H 1.08997 * 109.99570 * 218.67015 * 5 4 2 36 36 H 1.08996 * 109.78175 * 97.49475 * 5 4 2 37 37 H 0.97002 * 119.99544 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.47235 * 59.99877 * 12 11 9 39 39 H 1.08996 * 109.47424 * 299.99949 * 12 11 9 40 40 H 1.09006 * 109.99203 * 297.09815 * 15 13 12 41 41 H 1.09003 * 109.99348 * 58.46552 * 15 13 12 42 42 H 0.96998 * 120.00303 * 179.97438 * 20 19 17 43 43 H 1.08996 * 108.12748 * 211.10815 * 25 16 15 44 44 H 1.09005 * 108.12312 * 327.80220 * 25 16 15 45 45 H 1.09003 * 109.56704 * 79.28812 * 26 25 16 46 46 H 1.08999 * 109.56931 * 199.52466 * 26 25 16 47 47 H 1.09000 * 109.25490 * 82.42575 * 27 26 25 48 48 H 1.09004 * 109.25475 * 201.90208 * 27 26 25 49 49 H 1.09007 * 110.36138 * 143.19829 * 29 6 5 50 50 H 1.09001 * 110.37087 * 265.40998 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0861 -0.8085 1.2018 5 6 3.4657 -1.2798 0.6954 6 7 3.4271 -1.2428 -0.7739 7 6 4.4476 -1.5610 -1.5947 8 8 4.3005 -1.4992 -2.7977 9 6 5.7602 -1.9900 -1.0234 10 8 5.9074 -2.0514 0.1795 11 7 6.7809 -2.3078 -1.8442 12 6 8.0678 -2.7278 -1.2842 13 6 9.0454 -3.0285 -2.4221 14 1 9.1763 -2.1236 -3.0155 15 6 10.3425 -3.3996 -1.8404 16 7 11.2506 -3.7381 -2.9867 17 6 12.3137 -2.9323 -3.2963 18 1 12.2114 -1.8586 -3.2417 19 6 13.5229 -3.4956 -3.6803 20 7 14.3745 -2.7978 -4.4015 21 14 13.9414 -5.2442 -3.1736 22 1 13.5772 -6.1778 -4.2695 23 1 15.3976 -5.3454 -2.9006 24 1 13.1821 -5.5995 -1.9478 25 6 10.9837 -4.9218 -3.7514 26 6 10.0331 -4.7534 -4.9683 27 6 8.8714 -3.8047 -4.5703 28 8 8.4807 -4.0385 -3.2517 29 6 2.0852 -0.8062 -1.2006 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 2.1922 -0.1708 2.0795 34 1 1.4450 -1.6620 1.4222 35 1 3.6600 -2.2969 1.0355 36 1 4.2424 -0.6091 1.0627 37 1 6.6634 -2.2583 -2.8058 38 1 7.9262 -3.6244 -0.6808 39 1 8.4703 -1.9299 -0.6603 40 1 10.7514 -2.5613 -1.2761 41 1 10.2249 -4.2662 -1.1898 42 1 15.2196 -3.1913 -4.6695 43 1 11.9342 -5.3120 -4.1151 44 1 10.5475 -5.6653 -3.0843 45 1 10.5841 -4.3249 -5.8054 46 1 9.6314 -5.7253 -5.2549 47 1 9.2015 -2.7707 -4.6698 48 1 8.0235 -3.9768 -5.2334 49 1 2.1560 -0.1711 -2.0838 50 1 1.4524 -1.6698 -1.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150572904.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:38 Heat of formation + Delta-G solvation = -97.938586 kcal Electronic energy + Delta-G solvation = -30339.477501 eV Core-core repulsion = 26174.153874 eV Total energy + Delta-G solvation = -4165.323627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.93493 -40.95014 -39.84177 -38.77327 -37.08470 -36.21540 -34.04210 -33.84450 -33.55197 -30.65133 -30.64259 -28.56245 -27.46354 -27.18049 -25.25807 -24.13041 -23.02280 -22.59545 -21.86328 -21.33379 -20.90044 -19.02936 -18.81991 -18.12236 -17.64996 -17.59521 -17.33846 -17.03679 -16.56650 -16.24760 -16.01782 -15.73802 -15.40929 -15.07414 -14.90044 -14.72550 -14.45058 -14.28503 -14.17250 -14.10704 -13.93057 -13.72426 -13.62242 -13.42430 -13.18174 -12.82955 -12.77356 -12.67639 -12.63589 -12.34234 -12.04200 -11.99001 -11.74759 -11.66092 -11.62554 -11.55874 -11.34226 -10.76016 -10.59670 -10.45884 -10.33845 -9.88337 -8.76515 -8.23857 -5.64465 0.27858 1.17754 1.30063 1.39651 1.50982 2.06016 2.39094 2.40395 2.88181 3.00429 3.17665 3.25848 3.56743 3.61841 3.88740 3.90576 3.99309 4.19161 4.24642 4.27211 4.35511 4.36672 4.51656 4.54923 4.57055 4.58442 4.64598 4.69799 4.72978 4.78171 4.82753 4.94049 4.96323 4.98038 5.06063 5.09353 5.10556 5.12674 5.16338 5.19405 5.25164 5.31243 5.46366 5.91984 5.93733 6.13270 6.16704 6.26307 6.56132 6.86107 6.95614 7.57811 8.05433 8.94994 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.002151 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.259232 B =13015.857559 C =13360.274050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.122 4.122 5 C 0.102 3.898 6 N -0.591 5.591 7 C 0.516 3.484 8 O -0.549 6.549 9 C 0.507 3.493 10 O -0.534 6.534 11 N -0.684 5.684 12 C 0.126 3.874 13 C 0.070 3.930 14 H 0.065 0.935 15 C 0.112 3.888 16 N -0.610 5.610 17 C -0.257 4.257 18 H 0.046 0.954 19 C -0.011 4.011 20 N -0.941 5.941 21 Si 0.939 3.061 22 H -0.280 1.280 23 H -0.307 1.307 24 H -0.262 1.262 25 C 0.144 3.856 26 C -0.166 4.166 27 C 0.069 3.931 28 O -0.356 6.356 29 C 0.099 3.901 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.416 0.584 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.263 0.737 43 H 0.019 0.981 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.047 0.953 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.729 3.171 10.348 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.020 4.020 6 N -0.324 5.324 7 C 0.299 3.701 8 O -0.428 6.428 9 C 0.288 3.712 10 O -0.412 6.412 11 N -0.336 5.336 12 C 0.002 3.998 13 C 0.010 3.990 14 H 0.083 0.917 15 C -0.012 4.012 16 N -0.334 5.334 17 C -0.387 4.387 18 H 0.064 0.936 19 C -0.209 4.209 20 N -0.584 5.584 21 Si 0.768 3.232 22 H -0.207 1.207 23 H -0.235 1.235 24 H -0.187 1.187 25 C 0.017 3.983 26 C -0.207 4.207 27 C -0.008 4.008 28 O -0.274 6.274 29 C -0.022 4.022 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.092 0.908 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.571 2.985 10.552 30.604 hybrid contribution 1.340 -0.599 -0.863 1.703 sum -27.232 2.386 9.689 29.002 Atomic orbital electron populations 1.21678 0.91838 1.02910 1.03026 1.22370 0.97525 0.99023 0.92814 0.89418 1.22839 0.93637 1.01044 0.98478 1.22342 0.99757 1.02594 0.77313 1.48431 1.11988 1.63154 1.08818 1.19859 0.85005 0.79204 0.85989 1.90757 1.83232 1.53764 1.14999 1.20016 0.85337 0.79144 0.86738 1.90733 1.83120 1.52763 1.14551 1.45668 1.11557 1.65041 1.11319 1.21721 0.81253 1.01383 0.95471 1.21800 0.93137 0.91053 0.93008 0.91693 1.21194 0.89122 1.00914 0.89940 1.44191 1.30156 1.28243 1.30772 1.18586 0.88885 0.89532 1.41706 0.93624 1.26077 0.95858 1.01136 0.97823 1.69994 1.11181 1.40230 1.36959 0.85902 0.75658 0.82116 0.79488 1.20745 1.23509 1.18662 1.20717 0.95947 0.88650 0.92961 1.23459 0.97509 1.00678 0.99050 1.22412 0.96415 0.98227 0.83793 1.87569 1.70508 1.51225 1.18074 1.22691 0.81037 0.99307 0.99135 0.91794 0.90747 0.91943 0.87943 0.89135 0.90995 0.90978 0.74780 0.89955 0.88626 0.89572 0.92423 0.92747 0.96275 0.93715 0.93092 0.90164 0.93447 0.89014 0.90777 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.29 71.98 0.67 -0.04 16 2 C -0.10 -0.86 3.64 -9.40 -0.03 -0.89 16 3 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.12 -1.03 6.42 31.79 0.20 -0.82 16 5 C 0.10 1.61 5.49 86.73 0.48 2.09 16 6 N -0.59 -11.87 3.33 -813.35 -2.70 -14.57 16 7 C 0.52 13.35 7.91 87.27 0.69 14.04 16 8 O -0.55 -16.60 16.73 -3.24 -0.05 -16.65 16 9 C 0.51 13.47 7.86 87.27 0.69 14.15 16 10 O -0.53 -15.19 14.12 -3.24 -0.05 -15.24 16 11 N -0.68 -17.57 5.41 -464.43 -2.51 -20.08 16 12 C 0.13 3.22 5.25 86.38 0.45 3.67 16 13 C 0.07 2.12 2.13 28.71 0.06 2.18 16 14 H 0.07 2.09 6.77 -2.39 -0.02 2.08 16 15 C 0.11 4.00 5.58 83.79 0.47 4.46 16 16 N -0.61 -27.49 2.16 -706.01 -1.52 -29.02 16 17 C -0.26 -14.01 9.93 84.03 0.83 -13.18 16 18 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 19 C -0.01 -0.65 5.27 84.86 0.45 -0.20 16 20 N -0.94 -57.55 13.97 21.65 0.30 -57.25 16 21 Si 0.94 46.10 25.24 68.60 1.73 47.84 16 22 H -0.28 -13.35 6.74 99.48 0.67 -12.68 16 23 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 24 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 25 C 0.14 6.10 4.30 87.75 0.38 6.48 16 26 C -0.17 -5.96 6.75 32.14 0.22 -5.74 16 27 C 0.07 2.18 6.38 72.73 0.46 2.64 16 28 O -0.36 -11.19 9.42 -135.70 -1.28 -12.47 16 29 C 0.10 1.46 6.37 86.85 0.55 2.01 16 30 H 0.06 0.30 8.11 -2.39 -0.02 0.28 16 31 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.09 0.58 8.01 -2.39 -0.02 0.57 16 35 H 0.07 1.26 7.71 -2.39 -0.02 1.24 16 36 H 0.07 1.27 7.57 -2.39 -0.02 1.26 16 37 H 0.42 10.61 7.73 -92.71 -0.72 9.90 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.98 8.00 -2.38 -0.02 2.96 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.02 0.90 3.45 -2.39 -0.01 0.90 16 44 H 0.04 1.77 7.98 -2.38 -0.02 1.75 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.05 1.61 6.66 -2.39 -0.02 1.59 16 48 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.07 1.22 8.04 -2.38 -0.02 1.20 16 50 H 0.08 1.09 8.04 -2.39 -0.02 1.07 16 Total: -1.00 -69.18 389.75 0.67 -68.50 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.19 Total: 18.08 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 6.57 Total: 30.86 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -6.44 Total: -120.92 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.38 Total: -44.36 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.73 Total: 47.84 kcal Total: -69.18 0.67 -68.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150572904.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.434 kcal (2) G-P(sol) polarization free energy of solvation -69.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds