Wall clock time and date at job start Tue Mar 31 2020 23:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.87576 * 2 1 4 4 C 1.54326 * 109.88295 * 121.01498 * 2 1 3 5 5 H 1.09005 * 110.72326 * 215.92066 * 4 2 1 6 6 N 1.46906 * 110.71861 * 339.01537 * 4 2 1 7 7 C 1.46901 * 110.99793 * 202.56035 * 6 4 2 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47268 * 89.99721 * 15 13 11 17 17 H 1.48498 * 109.47211 * 209.99980 * 15 13 11 18 18 H 1.48505 * 109.46734 * 329.99774 * 15 13 11 19 19 C 1.55160 * 103.10263 * 97.46569 * 4 2 1 20 20 C 1.55119 * 101.48220 * 35.28420 * 19 4 2 21 21 N 1.47028 * 110.01119 * 238.89719 * 2 1 3 22 22 C 1.34777 * 125.64407 * 59.49031 * 21 2 1 23 23 O 1.21284 * 120.00033 * 0.02562 * 22 21 2 24 24 C 1.50696 * 119.99782 * 180.02562 * 22 21 2 25 25 C 1.52998 * 109.47299 * 180.02562 * 24 22 21 26 26 H 1.08998 * 110.27764 * 54.29099 * 25 24 22 27 27 C 1.54945 * 110.31424 * 176.39117 * 25 24 22 28 28 C 1.55407 * 100.89785 * 155.28298 * 27 25 24 29 29 C 1.54385 * 102.30969 * 325.99309 * 28 27 25 30 30 O 1.43238 * 107.58966 * 21.28107 * 29 28 27 31 31 H 1.09004 * 109.46979 * 298.98554 * 1 2 3 32 32 H 1.09005 * 109.47158 * 58.98422 * 1 2 3 33 33 H 1.08999 * 109.47376 * 178.98650 * 1 2 3 34 34 H 1.00899 * 110.99995 * 78.60432 * 6 4 2 35 35 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 36 36 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 37 37 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 38 38 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 39 39 H 1.08999 * 111.00094 * 153.48632 * 19 4 2 40 40 H 1.09003 * 111.00300 * 277.33753 * 19 4 2 41 41 H 1.09002 * 110.41767 * 204.29117 * 20 19 4 42 42 H 1.08997 * 110.21228 * 82.04614 * 20 19 4 43 43 H 1.09003 * 109.46983 * 299.99548 * 24 22 21 44 44 H 1.08995 * 109.47509 * 59.99505 * 24 22 21 45 45 H 1.08999 * 111.12032 * 273.27899 * 27 25 24 46 46 H 1.09001 * 111.12442 * 37.43114 * 27 25 24 47 47 H 1.09002 * 110.88774 * 207.75458 * 28 27 25 48 48 H 1.08996 * 110.93253 * 84.24850 * 28 27 25 49 49 H 1.09004 * 109.82783 * 261.77292 * 29 28 27 50 50 H 1.08997 * 109.83049 * 140.79579 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9624 -0.2774 1.6222 6 7 1.0251 -0.8027 2.2901 7 6 1.6297 -1.0065 3.6134 8 6 0.5452 -1.0568 4.6587 9 8 -0.6169 -0.9353 4.3332 10 7 0.8667 -1.2379 5.9550 11 6 -0.1199 -1.2841 6.9059 12 1 -1.1546 -1.1751 6.6161 13 6 0.2115 -1.4702 8.2423 14 7 1.4706 -1.6023 8.5948 15 14 -1.1327 -1.5340 9.5378 16 1 -1.5860 -2.9373 9.7121 17 1 -0.6026 -1.0213 10.8268 18 1 -2.2781 -0.6940 9.1044 19 6 2.3591 -2.1680 0.6980 20 6 2.8617 -1.8473 -0.7341 21 7 2.0331 -0.7137 -1.1829 22 6 1.7794 -0.3852 -2.4652 23 8 1.0815 0.5738 -2.7189 24 6 2.3628 -1.2095 -3.5837 25 6 1.9249 -0.6267 -4.9288 26 1 2.1837 0.4306 -4.9847 27 6 2.5873 -1.4049 -6.0935 28 6 1.5751 -1.1338 -7.2412 29 6 0.2283 -1.0867 -6.4880 30 8 0.5112 -0.8043 -5.1125 31 1 -0.3633 0.4980 0.8990 32 1 -0.3634 0.5296 -0.8808 33 1 -0.3634 -1.0275 -0.0182 34 1 0.3437 -1.5193 2.0896 35 1 2.3083 -0.1825 3.8337 36 1 2.1840 -1.9451 3.6189 37 1 1.7960 -1.3354 6.2151 38 1 1.7019 -1.7326 9.5278 39 1 3.1357 -2.6550 1.2877 40 1 1.4552 -2.7764 0.6665 41 1 2.7164 -2.7062 -1.3893 42 1 3.9134 -1.5620 -0.7090 43 1 3.4507 -1.1929 -3.5179 44 1 2.0095 -2.2372 -3.5002 45 1 3.5700 -0.9969 -6.3297 46 1 2.6498 -2.4698 -5.8691 47 1 1.5849 -1.9462 -7.9679 48 1 1.7821 -0.1797 -7.7256 49 1 -0.2759 -2.0495 -6.5715 50 1 -0.4013 -0.3007 -6.9050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178174406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:14 Heat of formation + Delta-G solvation = -112.249115 kcal Electronic energy + Delta-G solvation = -29567.894658 eV Core-core repulsion = 25401.950480 eV Total energy + Delta-G solvation = -4165.944178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57695 -39.60131 -38.37533 -37.60800 -34.71694 -33.79967 -32.79811 -32.17764 -31.25048 -31.06415 -30.40327 -27.16312 -26.46392 -25.14744 -23.85075 -23.17269 -22.15139 -21.73259 -20.24252 -19.32222 -18.92112 -17.93886 -17.43879 -17.13665 -16.39543 -16.12272 -15.81629 -15.53500 -15.31978 -15.10443 -14.52142 -14.46272 -14.00503 -13.93517 -13.69734 -13.58234 -13.40712 -12.99689 -12.76184 -12.75307 -12.48558 -12.33931 -12.16878 -12.12221 -12.07333 -11.64692 -11.54443 -11.52419 -11.45148 -11.37655 -11.22264 -11.04009 -10.82548 -10.72554 -10.39197 -10.21919 -9.75533 -9.72768 -9.51138 -8.71160 -8.47183 -8.06277 -7.96036 -6.42070 -3.82795 2.60361 2.81156 3.17949 3.26793 3.33073 3.48011 3.90188 4.04415 4.05499 4.17343 4.25143 4.37068 4.44488 4.50464 4.70617 4.73705 4.80484 4.87684 5.00257 5.06871 5.12334 5.14879 5.16241 5.20203 5.25399 5.26280 5.34633 5.36952 5.48062 5.55532 5.59367 5.63695 5.68911 5.76645 5.78965 5.87683 5.92022 6.00385 6.21831 6.26839 6.50430 6.67503 6.79720 7.17923 7.46035 7.55199 7.60241 8.06099 8.15401 8.60869 9.17794 9.53890 10.05314 10.75607 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036016 B = 0.001742 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.240243 B =16068.564807 C =16443.579949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.076 0.924 4 C 0.082 3.918 5 H 0.093 0.907 6 N -0.653 5.653 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.167 4.167 20 C 0.103 3.897 21 N -0.619 5.619 22 C 0.530 3.470 23 O -0.523 6.523 24 C -0.137 4.137 25 C 0.097 3.903 26 H 0.079 0.921 27 C -0.153 4.153 28 C -0.156 4.156 29 C 0.048 3.952 30 O -0.365 6.365 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.354 0.646 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.741 -3.123 -27.802 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.094 0.906 4 C -0.030 4.030 5 H 0.111 0.889 6 N -0.285 5.285 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.207 4.207 20 C -0.021 4.021 21 N -0.355 5.355 22 C 0.318 3.682 23 O -0.399 6.399 24 C -0.177 4.177 25 C 0.039 3.961 26 H 0.096 0.904 27 C -0.191 4.191 28 C -0.193 4.193 29 C -0.029 4.029 30 O -0.284 6.284 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.175 0.825 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.422 -1.813 -27.794 29.098 hybrid contribution 0.558 -1.261 0.710 1.551 sum 8.980 -3.074 -27.083 28.698 Atomic orbital electron populations 1.21932 0.93652 1.02024 1.03364 1.21477 0.95941 0.95462 0.82928 0.90615 1.22626 0.95003 0.93865 0.91472 0.88889 1.60054 1.13822 1.54962 0.99700 1.21711 0.96588 1.00570 0.89334 1.19799 0.89682 0.84451 0.83504 1.90536 1.20102 1.55102 1.80873 1.41857 1.09974 1.63230 1.04970 1.19708 0.90451 1.46449 0.86263 0.87910 1.25254 0.97173 0.97293 0.98204 1.69612 1.16427 1.49684 1.18620 0.85857 0.80448 0.78543 0.79446 1.20449 1.20931 1.19395 1.23618 1.02619 0.98941 0.95532 1.22266 0.94842 0.89197 0.95810 1.48664 1.50882 1.30679 1.05314 1.20099 0.80886 0.85211 0.81999 1.90732 1.37567 1.28715 1.82861 1.21855 1.02010 1.00981 0.92857 1.22689 0.81632 0.99205 0.92545 0.90354 1.23353 0.99505 1.01492 0.94739 1.23126 0.94855 1.02988 0.98368 1.23122 0.96685 1.00778 0.82294 1.88575 1.22652 1.92017 1.25159 0.89516 0.92105 0.93392 0.82469 0.89512 0.93758 0.77482 0.91897 0.89645 0.90225 0.90778 0.91219 0.87867 0.88332 0.89701 0.90153 0.90043 0.90476 0.91483 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.23 37.15 0.31 -1.94 16 2 C 0.15 1.86 3.47 -66.95 -0.23 1.62 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.08 0.96 3.12 -65.87 -0.21 0.75 16 5 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 6 N -0.65 -9.99 4.44 -106.04 -0.47 -10.46 16 7 C 0.05 0.84 6.04 -4.97 -0.03 0.81 16 8 C 0.44 10.17 7.82 -10.98 -0.09 10.09 16 9 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 10 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 11 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 15 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 19 C -0.17 -1.53 6.68 -24.47 -0.16 -1.69 16 20 C 0.10 0.80 6.69 -2.42 -0.02 0.78 16 21 N -0.62 -6.87 3.09 -162.89 -0.50 -7.37 16 22 C 0.53 6.51 7.55 -10.99 -0.08 6.43 16 23 O -0.52 -8.63 14.48 -4.44 -0.06 -8.69 16 24 C -0.14 -1.11 4.44 -27.89 -0.12 -1.24 16 25 C 0.10 0.87 2.91 -25.71 -0.07 0.79 16 26 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 27 C -0.15 -0.84 6.58 -24.43 -0.16 -1.00 16 28 C -0.16 -0.85 7.02 -24.73 -0.17 -1.03 16 29 C 0.05 0.38 7.80 37.88 0.30 0.68 16 30 O -0.36 -4.29 10.50 -45.23 -0.47 -4.77 16 31 H 0.09 1.41 7.41 -51.93 -0.38 1.02 16 32 H 0.06 0.99 6.77 -51.93 -0.35 0.64 16 33 H 0.05 0.70 7.93 -51.93 -0.41 0.29 16 34 H 0.35 5.73 7.36 -39.29 -0.29 5.44 16 35 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 41 H 0.07 0.46 7.48 -51.93 -0.39 0.07 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.71 7.85 -51.93 -0.41 0.30 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -34.43 400.33 -9.09 -43.52 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -8.36 Total: 11.93 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.99 Total: 7.11 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.31 Total: -55.59 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.45 Total: -29.01 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.43 -9.09 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178174406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.727 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds