Wall clock time and date at job start Tue Mar 31 2020 23:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.87576 * 2 1 4 4 C 1.54326 * 109.88295 * 121.01498 * 2 1 3 5 5 H 1.09005 * 110.72326 * 215.92066 * 4 2 1 6 6 N 1.46906 * 110.71861 * 339.01537 * 4 2 1 7 7 C 1.46901 * 110.99793 * 202.56035 * 6 4 2 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47268 * 89.99721 * 15 13 11 17 17 H 1.48498 * 109.47211 * 209.99980 * 15 13 11 18 18 H 1.48505 * 109.46734 * 329.99774 * 15 13 11 19 19 C 1.55160 * 103.10263 * 97.46569 * 4 2 1 20 20 C 1.55119 * 101.48220 * 35.28420 * 19 4 2 21 21 N 1.47028 * 110.01119 * 238.89719 * 2 1 3 22 22 C 1.34777 * 125.64407 * 59.49031 * 21 2 1 23 23 O 1.21284 * 120.00033 * 0.02562 * 22 21 2 24 24 C 1.50696 * 119.99782 * 180.02562 * 22 21 2 25 25 C 1.52998 * 109.47299 * 180.02562 * 24 22 21 26 26 H 1.08998 * 110.27764 * 54.29099 * 25 24 22 27 27 C 1.54945 * 110.31424 * 176.39117 * 25 24 22 28 28 C 1.55407 * 100.89785 * 155.28298 * 27 25 24 29 29 C 1.54385 * 102.30969 * 325.99309 * 28 27 25 30 30 O 1.43238 * 107.58966 * 21.28107 * 29 28 27 31 31 H 1.09004 * 109.46979 * 298.98554 * 1 2 3 32 32 H 1.09005 * 109.47158 * 58.98422 * 1 2 3 33 33 H 1.08999 * 109.47376 * 178.98650 * 1 2 3 34 34 H 1.00899 * 110.99995 * 78.60432 * 6 4 2 35 35 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 36 36 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 37 37 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 38 38 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 39 39 H 1.08999 * 111.00094 * 153.48632 * 19 4 2 40 40 H 1.09003 * 111.00300 * 277.33753 * 19 4 2 41 41 H 1.09002 * 110.41767 * 204.29117 * 20 19 4 42 42 H 1.08997 * 110.21228 * 82.04614 * 20 19 4 43 43 H 1.09003 * 109.46983 * 299.99548 * 24 22 21 44 44 H 1.08995 * 109.47509 * 59.99505 * 24 22 21 45 45 H 1.08999 * 111.12032 * 273.27899 * 27 25 24 46 46 H 1.09001 * 111.12442 * 37.43114 * 27 25 24 47 47 H 1.09002 * 110.88774 * 207.75458 * 28 27 25 48 48 H 1.08996 * 110.93253 * 84.24850 * 28 27 25 49 49 H 1.09004 * 109.82783 * 261.77292 * 29 28 27 50 50 H 1.08997 * 109.83049 * 140.79579 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9624 -0.2774 1.6222 6 7 1.0251 -0.8027 2.2901 7 6 1.6297 -1.0065 3.6134 8 6 0.5452 -1.0568 4.6587 9 8 -0.6169 -0.9353 4.3332 10 7 0.8667 -1.2379 5.9550 11 6 -0.1199 -1.2841 6.9059 12 1 -1.1546 -1.1751 6.6161 13 6 0.2115 -1.4702 8.2423 14 7 1.4706 -1.6023 8.5948 15 14 -1.1327 -1.5340 9.5378 16 1 -1.5860 -2.9373 9.7121 17 1 -0.6026 -1.0213 10.8268 18 1 -2.2781 -0.6940 9.1044 19 6 2.3591 -2.1680 0.6980 20 6 2.8617 -1.8473 -0.7341 21 7 2.0331 -0.7137 -1.1829 22 6 1.7794 -0.3852 -2.4652 23 8 1.0815 0.5738 -2.7189 24 6 2.3628 -1.2095 -3.5837 25 6 1.9249 -0.6267 -4.9288 26 1 2.1837 0.4306 -4.9847 27 6 2.5873 -1.4049 -6.0935 28 6 1.5751 -1.1338 -7.2412 29 6 0.2283 -1.0867 -6.4880 30 8 0.5112 -0.8043 -5.1125 31 1 -0.3633 0.4980 0.8990 32 1 -0.3634 0.5296 -0.8808 33 1 -0.3634 -1.0275 -0.0182 34 1 0.3437 -1.5193 2.0896 35 1 2.3083 -0.1825 3.8337 36 1 2.1840 -1.9451 3.6189 37 1 1.7960 -1.3354 6.2151 38 1 1.7019 -1.7326 9.5278 39 1 3.1357 -2.6550 1.2877 40 1 1.4552 -2.7764 0.6665 41 1 2.7164 -2.7062 -1.3893 42 1 3.9134 -1.5620 -0.7090 43 1 3.4507 -1.1929 -3.5179 44 1 2.0095 -2.2372 -3.5002 45 1 3.5700 -0.9969 -6.3297 46 1 2.6498 -2.4698 -5.8691 47 1 1.5849 -1.9462 -7.9679 48 1 1.7821 -0.1797 -7.7256 49 1 -0.2759 -2.0495 -6.5715 50 1 -0.4013 -0.3007 -6.9050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178174406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:13 Heat of formation + Delta-G solvation = -137.412365 kcal Electronic energy + Delta-G solvation = -29568.985819 eV Core-core repulsion = 25401.950480 eV Total energy + Delta-G solvation = -4167.035338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45348 -40.38976 -39.98008 -38.74345 -36.16399 -35.51617 -33.54038 -33.24228 -32.80539 -31.96797 -31.41483 -28.32340 -27.47662 -26.48968 -25.34320 -23.98564 -22.71909 -22.32695 -21.18699 -21.04983 -19.91847 -19.83605 -18.30403 -17.86806 -17.65388 -17.23058 -16.76285 -16.59189 -16.37284 -16.30001 -16.05907 -15.69632 -15.37673 -15.11022 -14.76368 -14.54596 -14.17783 -14.09926 -13.92274 -13.65927 -13.61439 -13.47816 -13.32865 -13.12937 -13.00369 -12.93048 -12.69247 -12.59736 -12.45679 -12.40151 -12.15060 -12.12399 -12.08569 -11.81433 -11.68197 -11.64560 -11.49483 -10.72388 -10.44710 -10.32369 -9.99604 -9.62492 -9.25326 -8.45747 -5.93960 1.38228 1.42265 1.54607 1.71233 1.95600 2.07917 2.30358 2.90837 2.93945 3.21902 3.40969 3.50947 3.57734 3.67772 3.79611 3.94429 4.02103 4.07505 4.17435 4.19487 4.26152 4.34250 4.37430 4.48005 4.50103 4.54003 4.60473 4.63497 4.67491 4.70786 4.76302 4.83002 4.84219 4.92078 5.01294 5.02374 5.06596 5.10063 5.13814 5.28920 5.38314 5.42250 5.45538 5.91515 6.13042 6.18475 6.37124 6.60735 6.62377 7.14546 7.25662 7.58664 8.14645 8.71450 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036016 B = 0.001742 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.240243 B =16068.564807 C =16443.579949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.145 3.855 3 H 0.062 0.938 4 C 0.086 3.914 5 H 0.111 0.889 6 N -0.672 5.672 7 C 0.068 3.932 8 C 0.436 3.564 9 O -0.626 6.626 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.076 0.924 13 C -0.011 4.011 14 N -0.918 5.918 15 Si 0.991 3.009 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.276 1.276 19 C -0.160 4.160 20 C 0.102 3.898 21 N -0.618 5.618 22 C 0.519 3.481 23 O -0.579 6.579 24 C -0.127 4.127 25 C 0.086 3.914 26 H 0.056 0.944 27 C -0.141 4.141 28 C -0.151 4.151 29 C 0.037 3.963 30 O -0.405 6.405 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.346 0.654 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.141 0.859 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.658 -5.103 -28.606 31.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.024 4.024 5 H 0.129 0.871 6 N -0.304 5.304 7 C -0.064 4.064 8 C 0.224 3.776 9 O -0.512 6.512 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.094 0.906 13 C -0.211 4.211 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.196 1.196 17 H -0.195 1.195 18 H -0.201 1.201 19 C -0.200 4.200 20 C -0.020 4.020 21 N -0.353 5.353 22 C 0.309 3.691 23 O -0.458 6.458 24 C -0.166 4.166 25 C 0.029 3.971 26 H 0.074 0.926 27 C -0.178 4.178 28 C -0.188 4.188 29 C -0.039 4.039 30 O -0.326 6.326 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.159 0.841 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.092 0.908 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.403 -3.823 -28.601 31.027 hybrid contribution -0.404 -0.596 0.915 1.164 sum 10.998 -4.419 -27.686 30.117 Atomic orbital electron populations 1.21749 0.95800 1.01062 1.01093 1.21341 0.94157 0.95651 0.84811 0.91945 1.22633 0.94255 0.95827 0.89721 0.87069 1.59971 1.15141 1.55141 1.00099 1.21553 0.94223 1.02910 0.87700 1.20974 0.90668 0.82003 0.83958 1.90508 1.22674 1.56415 1.81623 1.41910 1.09673 1.63961 1.05460 1.19642 0.90157 1.48788 0.87799 0.90561 1.25981 0.99392 0.96322 0.99406 1.69663 1.17503 1.49382 1.19380 0.84964 0.77679 0.78686 0.77222 1.19582 1.19518 1.20104 1.23583 1.03010 0.96800 0.96581 1.22550 0.95503 0.88748 0.95152 1.48742 1.50792 1.31259 1.04512 1.20990 0.80142 0.84923 0.83034 1.90709 1.40066 1.31292 1.83731 1.21925 1.03888 1.00455 0.90334 1.22841 0.80949 0.98814 0.94529 0.92611 1.23336 0.99897 1.01897 0.92691 1.23132 0.93145 1.03967 0.98563 1.23301 0.98387 1.00817 0.81442 1.88540 1.24681 1.92194 1.27142 0.91564 0.94441 0.93620 0.83347 0.87570 0.90627 0.76855 0.91319 0.87241 0.91311 0.88260 0.88365 0.84140 0.86742 0.87669 0.88602 0.87946 0.90325 0.90770 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 8.23 71.98 0.59 -3.76 16 2 C 0.14 3.68 3.47 45.34 0.16 3.84 16 3 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.09 1.84 3.12 46.10 0.14 1.98 16 5 H 0.11 2.01 7.86 -2.38 -0.02 1.99 16 6 N -0.67 -20.07 4.44 -489.41 -2.17 -22.24 16 7 C 0.07 2.15 6.04 85.56 0.52 2.67 16 8 C 0.44 20.32 7.82 87.66 0.69 21.01 16 9 O -0.63 -34.70 15.78 -3.07 -0.05 -34.74 16 10 N -0.57 -28.88 5.29 -306.98 -1.62 -30.51 16 11 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 12 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 13 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 14 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 15 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 C -0.16 -2.38 6.68 32.06 0.21 -2.16 16 20 C 0.10 1.18 6.69 86.93 0.58 1.77 16 21 N -0.62 -12.79 3.09 -787.65 -2.43 -15.22 16 22 C 0.52 12.49 7.55 87.66 0.66 13.15 16 23 O -0.58 -20.07 14.48 6.52 0.09 -19.98 16 24 C -0.13 -1.76 4.44 29.85 0.13 -1.62 16 25 C 0.09 1.46 2.91 31.26 0.09 1.55 16 26 H 0.06 1.15 7.96 -2.39 -0.02 1.13 16 27 C -0.14 -1.14 6.58 32.09 0.21 -0.93 16 28 C -0.15 -1.37 7.02 31.89 0.22 -1.15 16 29 C 0.04 0.59 7.80 72.45 0.56 1.15 16 30 O -0.41 -9.76 10.50 -139.42 -1.46 -11.22 16 31 H 0.07 2.31 7.41 -2.38 -0.02 2.29 16 32 H 0.04 1.32 6.77 -2.38 -0.02 1.31 16 33 H 0.04 1.40 7.93 -2.39 -0.02 1.38 16 34 H 0.35 11.24 7.36 -89.69 -0.66 10.58 16 35 H 0.11 3.00 8.08 -2.39 -0.02 2.98 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 38 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 41 H 0.10 0.72 7.48 -2.39 -0.02 0.71 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.11 1.25 7.85 -2.39 -0.02 1.23 16 45 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.10 0.51 8.06 -2.39 -0.02 0.50 16 47 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -80.20 400.33 0.29 -79.91 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.44 Total: 38.42 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.06 Total: 19.22 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.94 Total: -116.65 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -1.42 Total: -65.94 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -80.20 0.29 -79.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178174406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.500 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds