Wall clock time and date at job start Tue Mar 31 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.68145 * 2 1 4 4 C 1.55001 * 110.61612 * 237.03552 * 2 1 3 5 5 C 1.54807 * 102.09563 * 204.47904 * 4 2 1 6 6 C 1.54098 * 104.18696 * 20.87760 * 5 4 2 7 7 H 1.09000 * 109.88476 * 242.45880 * 6 5 4 8 8 C 1.50703 * 109.87602 * 121.45493 * 6 5 4 9 9 O 1.21289 * 120.00002 * 245.00249 * 8 6 5 10 10 N 1.34774 * 119.99713 * 65.00188 * 8 6 5 11 11 C 1.47418 * 125.65152 * 0.04270 * 10 8 6 12 12 C 1.54910 * 104.83533 * 204.09074 * 11 10 8 13 13 C 1.55157 * 101.57963 * 322.99215 * 12 11 10 14 14 H 1.09003 * 110.86920 * 277.06242 * 13 12 11 15 15 N 1.46901 * 110.71905 * 153.86227 * 13 12 11 16 16 C 1.46902 * 110.99844 * 91.47471 * 15 13 12 17 17 C 1.50702 * 109.47027 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31411 * 119.99899 * 180.27617 * 22 20 19 24 24 Si 1.86800 * 120.00160 * 0.27431 * 22 20 19 25 25 H 1.48508 * 109.46685 * 89.99768 * 24 22 20 26 26 H 1.48494 * 109.47357 * 209.99847 * 24 22 20 27 27 H 1.48494 * 109.47227 * 330.00365 * 24 22 20 28 28 C 1.47023 * 125.64655 * 180.02562 * 10 8 6 29 29 H 1.09002 * 109.88311 * 298.39575 * 28 10 8 30 30 C 1.53000 * 110.01489 * 59.48521 * 28 10 8 31 31 O 1.43746 * 107.29384 * 2.03568 * 6 5 4 32 32 H 1.08994 * 109.47104 * 182.96131 * 1 2 3 33 33 H 1.09001 * 109.46598 * 302.96378 * 1 2 3 34 34 H 1.08997 * 109.46796 * 62.95801 * 1 2 3 35 35 H 1.09001 * 110.90442 * 86.27843 * 4 2 1 36 36 H 1.09005 * 110.90779 * 322.68142 * 4 2 1 37 37 H 1.09005 * 110.48277 * 262.20699 * 5 4 2 38 38 H 1.08998 * 110.60305 * 139.61603 * 5 4 2 39 39 H 1.09004 * 110.36655 * 322.93133 * 11 10 8 40 40 H 1.09007 * 110.36733 * 85.14221 * 11 10 8 41 41 H 1.09000 * 111.00879 * 204.91336 * 12 11 10 42 42 H 1.09005 * 111.00290 * 81.05895 * 12 11 10 43 43 H 1.00894 * 111.00401 * 327.52370 * 15 13 12 44 44 H 1.09004 * 109.47131 * 60.00016 * 16 15 13 45 45 H 1.08994 * 109.47471 * 299.99766 * 16 15 13 46 46 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 47 47 H 0.97005 * 120.00019 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.47352 * 177.88553 * 30 28 10 49 49 H 1.09001 * 109.47396 * 297.88869 * 30 28 10 50 50 H 1.09006 * 109.46920 * 57.88500 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2172 5 6 3.4794 -1.2169 -0.7237 6 6 3.3839 -1.1256 0.8116 7 1 4.0873 -0.3803 1.1832 8 6 3.6888 -2.4681 1.4247 9 8 2.8269 -3.0669 2.0326 10 7 4.9192 -3.0032 1.2974 11 6 6.0553 -2.3864 0.5890 12 6 6.9679 -3.5740 0.1932 13 6 6.8228 -4.5031 1.4273 14 1 7.4959 -4.1941 2.2271 15 7 7.0683 -5.9029 1.0557 16 6 8.4836 -6.2543 1.2331 17 6 8.6963 -7.6945 0.8435 18 8 7.7610 -8.3623 0.4557 19 7 9.9258 -8.2404 0.9260 20 6 10.1194 -9.5503 0.5711 21 1 9.2868 -10.1448 0.2250 22 6 11.3881 -10.1115 0.6507 23 7 11.5747 -11.3656 0.3053 24 14 12.8284 -9.0832 1.2485 25 1 12.9501 -9.2117 2.7230 26 1 14.0786 -9.5609 0.6052 27 1 12.6015 -7.6594 0.8929 28 6 5.3506 -4.2988 1.8424 29 1 5.2700 -4.2891 2.9294 30 6 4.4867 -5.4228 1.2669 31 8 2.0384 -0.7354 1.1337 32 1 -0.3633 -1.0262 0.0531 33 1 -0.3632 0.5592 0.8623 34 1 -0.3633 0.4672 -0.9153 35 1 2.1509 -0.1476 -2.0950 36 1 1.4548 -1.6606 -1.4260 37 1 4.2406 -0.5333 -1.0999 38 1 3.6997 -2.2388 -1.0322 39 1 5.7078 -1.8619 -0.3011 40 1 6.5870 -1.7009 1.2491 41 1 8.0006 -3.2485 0.0683 42 1 6.6023 -4.0636 -0.7095 43 1 6.7666 -6.0843 0.1102 44 1 8.7643 -6.1155 2.2772 45 1 9.0991 -5.6124 0.6030 46 1 10.6739 -7.7062 1.2358 47 1 12.4603 -11.7575 0.3612 48 1 4.8379 -6.3820 1.6473 49 1 3.4489 -5.2720 1.5642 50 1 4.5579 -5.4152 0.1792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179565600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:57 Heat of formation + Delta-G solvation = -127.758298 kcal Electronic energy + Delta-G solvation = -30040.063906 eV Core-core repulsion = 25873.447199 eV Total energy + Delta-G solvation = -4166.616707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76808 -40.49489 -39.99898 -38.64698 -36.22267 -35.61757 -33.73985 -33.35765 -33.18391 -31.99448 -31.40552 -28.49155 -27.55929 -26.45368 -25.18426 -24.24343 -23.02566 -22.20477 -21.45241 -21.27501 -20.31305 -19.98940 -18.55869 -17.74000 -17.51035 -17.34787 -16.90267 -16.81540 -16.42898 -16.17196 -15.82402 -15.39321 -15.17056 -14.98829 -14.82731 -14.61948 -14.44749 -14.34506 -13.97820 -13.84251 -13.63550 -13.60960 -13.33862 -13.29038 -13.08296 -13.00519 -12.73728 -12.72551 -12.47132 -12.41111 -12.38724 -11.96788 -11.90758 -11.85187 -11.80374 -11.61292 -11.48981 -11.07894 -10.49527 -10.38901 -10.22690 -9.71447 -9.25384 -8.39376 -6.00445 1.31481 1.38386 1.46831 1.51769 1.68144 1.99489 2.25311 2.73428 2.89474 3.17324 3.27733 3.37060 3.51849 3.63056 3.76246 3.83359 3.90089 4.07581 4.14079 4.18098 4.23211 4.28930 4.35431 4.41283 4.44082 4.51752 4.55217 4.61130 4.63477 4.72145 4.75442 4.77971 4.87278 4.93789 4.96934 5.00441 5.09344 5.12409 5.15214 5.25232 5.37278 5.39005 5.54806 5.87710 5.93109 6.07840 6.36531 6.48209 6.62037 6.90840 7.11604 7.42668 8.00290 8.78389 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032365 B = 0.001931 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.926912 B =14498.880985 C =14704.291751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.142 4.142 6 C 0.067 3.933 7 H 0.121 0.879 8 C 0.518 3.482 9 O -0.577 6.577 10 N -0.610 5.610 11 C 0.093 3.907 12 C -0.157 4.157 13 C 0.089 3.911 14 H 0.117 0.883 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.447 3.553 18 O -0.617 6.617 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.225 1.225 28 C 0.144 3.856 29 H 0.063 0.937 30 C -0.140 4.140 31 O -0.385 6.385 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.348 0.652 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.278 0.722 48 H 0.067 0.933 49 H 0.033 0.967 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 33.735 -2.701 34.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 H 0.115 0.885 4 C -0.185 4.185 5 C -0.180 4.180 6 C 0.006 3.994 7 H 0.138 0.862 8 C 0.307 3.693 9 O -0.456 6.456 10 N -0.345 5.345 11 C -0.028 4.028 12 C -0.196 4.196 13 C -0.022 4.022 14 H 0.135 0.865 15 N -0.308 5.308 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.148 1.148 28 C 0.039 3.961 29 H 0.081 0.919 30 C -0.198 4.198 31 O -0.305 6.305 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.091 0.909 43 H 0.168 0.832 44 H 0.134 0.866 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.053 0.947 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.151 32.524 -1.853 34.122 hybrid contribution 0.947 -0.472 -0.419 1.138 sum -9.205 32.052 -2.273 33.425 Atomic orbital electron populations 1.21808 0.92848 1.02210 1.03588 1.23510 0.95849 0.96043 0.84112 0.88502 1.23224 0.95217 1.00849 0.99234 1.23020 0.99956 1.04055 0.90924 1.22713 0.87070 0.92670 0.96926 0.86188 1.20874 0.80633 0.87913 0.79859 1.90698 1.47121 1.63964 1.43795 1.48574 1.10737 1.20308 1.54866 1.22714 0.85988 0.96178 0.97953 1.23548 1.02104 0.96269 0.97721 1.22622 0.94190 0.86540 0.98854 0.86517 1.59925 1.17595 1.20585 1.32666 1.21669 0.90451 0.90544 1.04055 1.21100 0.82247 0.91051 0.82110 1.90562 1.42632 1.65136 1.51776 1.42013 1.09388 1.10847 1.61001 1.18996 0.96060 0.87511 1.43238 0.92946 1.26167 1.01089 0.97356 0.97005 1.69818 1.24759 1.14701 1.48457 0.85332 0.76817 0.79879 0.79259 1.18401 1.20242 1.14845 1.21422 0.94589 0.82655 0.97384 0.91931 1.21760 0.98504 0.99177 1.00365 1.89001 1.27175 1.73832 1.40451 0.93659 0.92093 0.88441 0.86703 0.91981 0.85604 0.90995 0.87982 0.88299 0.86673 0.90891 0.83169 0.86575 0.89460 0.77359 0.91226 0.91382 0.94738 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.65 71.98 0.69 -1.15 16 2 C 0.06 0.80 3.98 31.28 0.12 0.93 16 3 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.15 -1.50 6.59 31.90 0.21 -1.29 16 5 C -0.14 -1.39 4.84 31.58 0.15 -1.24 16 6 C 0.07 1.11 3.27 30.22 0.10 1.21 16 7 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 8 C 0.52 12.80 6.79 87.66 0.60 13.39 16 9 O -0.58 -20.88 15.44 15.66 0.24 -20.64 16 10 N -0.61 -11.67 3.08 -788.05 -2.43 -14.10 16 11 C 0.09 0.85 6.60 86.86 0.57 1.42 16 12 C -0.16 -1.71 6.67 31.99 0.21 -1.50 16 13 C 0.09 1.56 3.15 46.10 0.15 1.70 16 14 H 0.12 1.60 7.82 -2.39 -0.02 1.58 16 15 N -0.68 -17.61 4.39 -489.44 -2.15 -19.76 16 16 C 0.06 1.71 6.03 85.56 0.52 2.23 16 17 C 0.45 19.18 7.82 87.66 0.69 19.86 16 18 O -0.62 -33.48 15.78 -3.07 -0.05 -33.53 16 19 N -0.59 -26.76 5.09 -306.97 -1.56 -28.32 16 20 C -0.33 -19.01 10.16 84.04 0.85 -18.16 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 23 N -0.94 -56.27 13.96 21.66 0.30 -55.96 16 24 Si 0.97 37.69 27.74 68.60 1.90 39.59 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.23 -7.10 6.51 99.48 0.65 -6.46 16 28 C 0.14 3.32 3.47 45.34 0.16 3.48 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 C -0.14 -4.08 8.27 71.98 0.60 -3.48 16 31 O -0.39 -8.62 10.44 -130.26 -1.36 -9.98 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.87 8.06 -2.38 -0.02 0.85 16 37 H 0.13 0.27 7.83 -2.38 -0.02 0.25 16 38 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 39 H 0.10 0.49 5.61 -2.38 -0.01 0.48 16 40 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.97 7.77 -2.38 -0.02 0.95 16 43 H 0.35 9.98 7.45 -89.70 -0.67 9.31 16 44 H 0.12 2.53 8.08 -2.38 -0.02 2.51 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.39 14.31 5.76 -92.71 -0.53 13.77 16 47 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 48 H 0.07 2.24 7.41 -2.39 -0.02 2.22 16 49 H 0.03 1.15 6.77 -2.39 -0.02 1.14 16 50 H 0.05 1.38 7.98 -2.38 -0.02 1.36 16 Total: -1.00 -89.52 394.53 0.68 -88.85 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.30 Total: 36.96 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.08 Total: 16.89 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -5.84 Total: -118.14 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -1.17 Total: -64.15 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.90 Total: 39.59 kcal Total: -89.52 0.68 -88.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179565600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.911 kcal (2) G-P(sol) polarization free energy of solvation -89.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds