Wall clock time and date at job start Tue Mar 31 2020 23:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99469 * 2 1 4 4 C 1.54328 * 109.78472 * 121.16261 * 2 1 3 5 5 H 1.09001 * 110.52256 * 215.81070 * 4 2 1 6 6 N 1.46502 * 110.99907 * 338.96430 * 4 2 1 7 7 C 1.36940 * 119.99634 * 200.23362 * 6 4 2 8 8 H 1.07996 * 120.00191 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99830 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99991 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99810 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47547 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47032 * 120.00385 * 11 9 7 14 14 H 1.48508 * 109.47020 * 239.99946 * 11 9 7 15 15 C 1.55159 * 103.02081 * 97.49552 * 4 2 1 16 16 C 1.54913 * 101.57741 * 35.30924 * 15 4 2 17 17 N 1.47022 * 109.88199 * 238.90767 * 2 1 3 18 18 C 1.34783 * 125.64764 * 59.55536 * 17 2 1 19 19 O 1.21275 * 119.99914 * 359.71735 * 18 17 2 20 20 C 1.50700 * 119.99600 * 179.71503 * 18 17 2 21 21 N 1.46498 * 109.46769 * 179.97438 * 20 18 17 22 22 C 1.34777 * 119.99828 * 179.72341 * 21 20 18 23 23 O 1.21283 * 120.00222 * 0.28168 * 22 21 20 24 24 C 1.50703 * 120.00290 * 180.27728 * 22 21 20 25 25 C 1.53173 * 109.54067 * 299.82850 * 24 22 21 26 26 C 1.53108 * 109.15663 * 183.24117 * 25 24 22 27 27 O 1.42892 * 109.48908 * 57.46857 * 26 25 24 28 28 C 1.42903 * 114.09984 * 298.89133 * 27 26 25 29 29 C 1.53091 * 109.41270 * 61.15902 * 28 27 26 30 30 H 1.09003 * 109.46433 * 179.64445 * 1 2 3 31 31 H 1.08996 * 109.47158 * 299.63963 * 1 2 3 32 32 H 1.08997 * 109.47208 * 59.64387 * 1 2 3 33 33 H 0.97000 * 120.00585 * 20.22815 * 6 4 2 34 34 H 0.97002 * 119.99507 * 180.02562 * 10 9 7 35 35 H 1.09000 * 111.00760 * 277.23843 * 15 4 2 36 36 H 1.09002 * 111.00518 * 153.37996 * 15 4 2 37 37 H 1.09005 * 110.36682 * 204.14784 * 16 15 4 38 38 H 1.09002 * 110.46088 * 81.87500 * 16 15 4 39 39 H 1.09004 * 109.47210 * 60.00194 * 20 18 17 40 40 H 1.08994 * 109.47121 * 300.00164 * 20 18 17 41 41 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 42 42 H 1.08999 * 109.53917 * 59.99706 * 24 22 21 43 43 H 1.09001 * 109.52429 * 303.05192 * 25 24 22 44 44 H 1.09001 * 109.53135 * 63.24521 * 25 24 22 45 45 H 1.09006 * 109.39947 * 297.49087 * 26 25 24 46 46 H 1.08999 * 109.48427 * 177.50687 * 26 25 24 47 47 H 1.08997 * 109.48061 * 301.17284 * 28 27 26 48 48 H 1.09003 * 109.47883 * 181.13635 * 28 27 26 49 49 H 1.09002 * 109.52505 * 182.48440 * 29 28 27 50 50 H 1.09004 * 109.52424 * 62.29792 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0524 -0.7515 1.2426 5 1 2.9607 -0.2814 1.6196 6 7 1.0289 -0.8106 2.2892 7 6 1.3910 -1.0480 3.5883 8 1 2.4310 -1.1920 3.8413 9 6 0.4213 -1.1035 4.5800 10 7 -0.8463 -0.9285 4.2716 11 14 0.9152 -1.4281 6.3521 12 1 2.3891 -1.5892 6.4336 13 1 0.4951 -0.2839 7.2005 14 1 0.2538 -2.6685 6.8310 15 6 2.3563 -2.1696 0.6914 16 6 2.8613 -1.8464 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7753 -0.3843 -2.4658 19 8 1.0745 0.5728 -2.7179 20 6 2.3612 -1.2052 -3.5856 21 7 1.9391 -0.6471 -4.8726 22 6 2.3498 -1.2186 -6.0221 23 8 3.0646 -2.1979 -5.9909 24 6 1.9207 -0.6409 -7.3462 25 6 0.3926 -0.6722 -7.4478 26 6 -0.0298 -0.1591 -8.8271 27 8 0.5831 -0.9577 -9.8411 28 6 2.0117 -0.9271 -9.8239 29 6 2.5163 -1.4733 -8.4857 30 1 -0.3632 -1.0277 -0.0064 31 1 -0.3633 0.5082 0.8932 32 1 -0.3633 0.5193 -0.8867 33 1 0.0948 -0.6815 2.0619 34 1 -1.5238 -0.9669 4.9647 35 1 1.4523 -2.7778 0.6579 36 1 3.1330 -2.6591 1.2790 37 1 2.7179 -2.7047 -1.3933 38 1 3.9126 -1.5592 -0.7135 39 1 2.0109 -2.2341 -3.5036 40 1 3.4490 -1.1854 -3.5197 41 1 1.3676 0.1363 -4.8976 42 1 2.2702 0.3885 -7.4253 43 1 0.0398 -1.6953 -7.3175 44 1 -0.0372 -0.0364 -6.6738 45 1 0.2867 0.8779 -8.9401 46 1 -1.1140 -0.2207 -8.9215 47 1 2.3549 0.0997 -9.9501 48 1 2.3983 -1.5423 -10.6365 49 1 3.6039 -1.4099 -8.4531 50 1 2.2077 -2.5131 -8.3770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179734457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:24 Heat of formation + Delta-G solvation = -103.886706 kcal Electronic energy + Delta-G solvation = -29818.660244 eV Core-core repulsion = 25653.078687 eV Total energy + Delta-G solvation = -4165.581557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79994 -40.09548 -38.87010 -37.69038 -34.71748 -34.31174 -34.09004 -31.86322 -31.51045 -30.82447 -29.49394 -27.94320 -25.78732 -25.29981 -23.95632 -23.50108 -22.67384 -21.51406 -20.35083 -19.89452 -18.83179 -17.98526 -17.48968 -16.84512 -16.51760 -16.33489 -16.18522 -16.04692 -15.49942 -15.19879 -14.93876 -14.73082 -14.47355 -14.08424 -13.88414 -13.78154 -13.54830 -13.27493 -12.99664 -12.80621 -12.60043 -12.55925 -12.13271 -11.93574 -11.86812 -11.76708 -11.61035 -11.33345 -11.19302 -11.03554 -10.90714 -10.88349 -10.54979 -10.33426 -10.28471 -10.04630 -9.90505 -9.83837 -9.67228 -9.43626 -9.01672 -8.58212 -7.08869 -5.87405 -3.17562 2.29955 2.51804 2.55914 3.18631 3.37233 3.43212 3.45387 3.47116 4.14844 4.24626 4.30756 4.35018 4.50036 4.53427 4.75517 4.81745 4.92203 5.00046 5.06524 5.07123 5.13140 5.17102 5.19365 5.26115 5.30619 5.37046 5.44418 5.52557 5.55024 5.57431 5.64867 5.70598 5.83692 5.90745 6.01419 6.03862 6.13343 6.22785 6.45389 6.48968 6.59409 6.72742 6.75948 6.89803 7.18923 7.54471 7.61657 7.89414 8.05713 8.30968 9.42841 9.97011 10.31784 11.35013 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.001871 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.350925 B =14965.480765 C =15457.393477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.073 0.927 4 C 0.173 3.827 5 H 0.064 0.936 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.153 4.153 16 C 0.093 3.907 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.543 6.543 20 C 0.103 3.897 21 N -0.716 5.716 22 C 0.521 3.479 23 O -0.539 6.539 24 C -0.107 4.107 25 C -0.150 4.150 26 C 0.063 3.937 27 O -0.383 6.383 28 C 0.060 3.940 29 C -0.136 4.136 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.412 0.588 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.098 0.902 49 H 0.081 0.919 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 1.151 -25.342 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.092 0.908 4 C 0.061 3.939 5 H 0.081 0.919 6 N -0.360 5.360 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.194 4.194 16 C -0.030 4.030 17 N -0.336 5.336 18 C 0.309 3.691 19 O -0.422 6.422 20 C -0.024 4.024 21 N -0.371 5.371 22 C 0.307 3.693 23 O -0.416 6.416 24 C -0.129 4.129 25 C -0.188 4.188 26 C -0.014 4.014 27 O -0.301 6.301 28 C -0.016 4.016 29 C -0.174 4.174 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.250 0.750 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.070 0.930 48 H 0.116 0.884 49 H 0.100 0.900 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.447 0.854 -25.440 26.258 hybrid contribution -0.087 0.254 1.376 1.402 sum 6.360 1.108 -24.064 24.915 Atomic orbital electron populations 1.22005 0.94379 1.02531 1.02763 1.21884 0.95536 0.95757 0.84275 0.90848 1.21177 0.93303 0.92043 0.87338 0.91860 1.42662 1.05097 1.85317 1.02971 1.19275 0.93044 1.41323 0.83940 0.90959 1.24770 0.95301 1.02415 0.98222 1.69670 0.99347 1.56301 1.32484 0.86098 0.77553 0.77450 0.84919 1.20493 1.21813 1.21822 1.23562 1.01826 1.01351 0.92710 1.22494 0.94570 0.88315 0.97667 1.48540 1.49623 1.30649 1.04778 1.20002 0.81182 0.85068 0.82812 1.90668 1.39159 1.29291 1.83050 1.21050 1.01019 0.98028 0.82278 1.45752 1.53103 1.33824 1.04449 1.20546 0.79822 0.83615 0.85305 1.90714 1.37112 1.26105 1.87665 1.21362 0.97354 1.01573 0.92582 1.22238 0.93506 1.03882 0.99183 1.22579 0.98595 0.93961 0.86278 1.87957 1.19300 1.69778 1.53085 1.22638 0.81062 1.00636 0.97306 1.22034 1.01492 1.00744 0.93117 0.92445 0.90109 0.92133 0.77115 0.93386 0.90548 0.90364 0.91044 0.91208 0.88432 0.88476 0.75013 0.88199 0.90207 0.89893 0.92804 0.88301 0.93018 0.88411 0.90021 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 7.94 37.16 0.30 -2.53 16 2 C 0.13 2.14 3.49 -66.95 -0.23 1.90 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.17 3.16 3.44 -66.09 -0.23 2.93 16 5 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 6 N -0.72 -16.74 5.02 -51.65 -0.26 -17.00 16 7 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 11 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 C -0.15 -2.36 6.77 -24.58 -0.17 -2.52 16 16 C 0.09 1.11 6.69 -2.53 -0.02 1.10 16 17 N -0.60 -8.45 3.08 -163.01 -0.50 -8.95 16 18 C 0.52 7.11 7.70 -10.98 -0.08 7.03 16 19 O -0.54 -8.73 14.55 5.56 0.08 -8.65 16 20 C 0.10 1.13 5.16 -5.19 -0.03 1.11 16 21 N -0.72 -7.34 5.43 -61.47 -0.33 -7.67 16 22 C 0.52 5.49 7.16 -10.98 -0.08 5.41 16 23 O -0.54 -7.45 15.97 5.55 0.09 -7.36 16 24 C -0.11 -0.81 2.61 -91.59 -0.24 -1.05 16 25 C -0.15 -1.02 5.30 -26.59 -0.14 -1.16 16 26 C 0.06 0.40 6.84 37.21 0.25 0.65 16 27 O -0.38 -3.22 10.77 -35.23 -0.38 -3.60 16 28 C 0.06 0.39 6.84 37.20 0.25 0.64 16 29 C -0.14 -1.04 4.74 -26.60 -0.13 -1.16 16 30 H 0.06 1.05 8.06 -51.93 -0.42 0.64 16 31 H 0.08 1.58 6.74 -51.93 -0.35 1.23 16 32 H 0.06 1.06 6.74 -51.93 -0.35 0.71 16 33 H 0.39 9.69 4.97 -40.82 -0.20 9.48 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.72 7.48 -51.93 -0.39 0.34 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.04 7.85 -51.93 -0.41 0.63 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.41 3.98 6.94 -40.82 -0.28 3.70 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.49 7.68 -51.93 -0.40 0.09 16 45 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -32.20 395.36 -8.69 -40.89 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.26 Total: 10.77 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.78 Total: 5.40 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.37 Total: -59.97 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.21 Total: -19.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.20 -8.69 -40.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179734457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.997 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds