Wall clock time and date at job start Tue Mar 31 2020 23:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99469 * 2 1 4 4 C 1.54328 * 109.78472 * 121.16261 * 2 1 3 5 5 H 1.09001 * 110.52256 * 215.81070 * 4 2 1 6 6 N 1.46502 * 110.99907 * 338.96430 * 4 2 1 7 7 C 1.36940 * 119.99634 * 200.23362 * 6 4 2 8 8 H 1.07996 * 120.00191 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99830 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99991 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99810 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47547 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47032 * 120.00385 * 11 9 7 14 14 H 1.48508 * 109.47020 * 239.99946 * 11 9 7 15 15 C 1.55159 * 103.02081 * 97.49552 * 4 2 1 16 16 C 1.54913 * 101.57741 * 35.30924 * 15 4 2 17 17 N 1.47022 * 109.88199 * 238.90767 * 2 1 3 18 18 C 1.34783 * 125.64764 * 59.55536 * 17 2 1 19 19 O 1.21275 * 119.99914 * 359.71735 * 18 17 2 20 20 C 1.50700 * 119.99600 * 179.71503 * 18 17 2 21 21 N 1.46498 * 109.46769 * 179.97438 * 20 18 17 22 22 C 1.34777 * 119.99828 * 179.72341 * 21 20 18 23 23 O 1.21283 * 120.00222 * 0.28168 * 22 21 20 24 24 C 1.50703 * 120.00290 * 180.27728 * 22 21 20 25 25 C 1.53173 * 109.54067 * 299.82850 * 24 22 21 26 26 C 1.53108 * 109.15663 * 183.24117 * 25 24 22 27 27 O 1.42892 * 109.48908 * 57.46857 * 26 25 24 28 28 C 1.42903 * 114.09984 * 298.89133 * 27 26 25 29 29 C 1.53091 * 109.41270 * 61.15902 * 28 27 26 30 30 H 1.09003 * 109.46433 * 179.64445 * 1 2 3 31 31 H 1.08996 * 109.47158 * 299.63963 * 1 2 3 32 32 H 1.08997 * 109.47208 * 59.64387 * 1 2 3 33 33 H 0.97000 * 120.00585 * 20.22815 * 6 4 2 34 34 H 0.97002 * 119.99507 * 180.02562 * 10 9 7 35 35 H 1.09000 * 111.00760 * 277.23843 * 15 4 2 36 36 H 1.09002 * 111.00518 * 153.37996 * 15 4 2 37 37 H 1.09005 * 110.36682 * 204.14784 * 16 15 4 38 38 H 1.09002 * 110.46088 * 81.87500 * 16 15 4 39 39 H 1.09004 * 109.47210 * 60.00194 * 20 18 17 40 40 H 1.08994 * 109.47121 * 300.00164 * 20 18 17 41 41 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 42 42 H 1.08999 * 109.53917 * 59.99706 * 24 22 21 43 43 H 1.09001 * 109.52429 * 303.05192 * 25 24 22 44 44 H 1.09001 * 109.53135 * 63.24521 * 25 24 22 45 45 H 1.09006 * 109.39947 * 297.49087 * 26 25 24 46 46 H 1.08999 * 109.48427 * 177.50687 * 26 25 24 47 47 H 1.08997 * 109.48061 * 301.17284 * 28 27 26 48 48 H 1.09003 * 109.47883 * 181.13635 * 28 27 26 49 49 H 1.09002 * 109.52505 * 182.48440 * 29 28 27 50 50 H 1.09004 * 109.52424 * 62.29792 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0524 -0.7515 1.2426 5 1 2.9607 -0.2814 1.6196 6 7 1.0289 -0.8106 2.2892 7 6 1.3910 -1.0480 3.5883 8 1 2.4310 -1.1920 3.8413 9 6 0.4213 -1.1035 4.5800 10 7 -0.8463 -0.9285 4.2716 11 14 0.9152 -1.4281 6.3521 12 1 2.3891 -1.5892 6.4336 13 1 0.4951 -0.2839 7.2005 14 1 0.2538 -2.6685 6.8310 15 6 2.3563 -2.1696 0.6914 16 6 2.8613 -1.8464 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7753 -0.3843 -2.4658 19 8 1.0745 0.5728 -2.7179 20 6 2.3612 -1.2052 -3.5856 21 7 1.9391 -0.6471 -4.8726 22 6 2.3498 -1.2186 -6.0221 23 8 3.0646 -2.1979 -5.9909 24 6 1.9207 -0.6409 -7.3462 25 6 0.3926 -0.6722 -7.4478 26 6 -0.0298 -0.1591 -8.8271 27 8 0.5831 -0.9577 -9.8411 28 6 2.0117 -0.9271 -9.8239 29 6 2.5163 -1.4733 -8.4857 30 1 -0.3632 -1.0277 -0.0064 31 1 -0.3633 0.5082 0.8932 32 1 -0.3633 0.5193 -0.8867 33 1 0.0948 -0.6815 2.0619 34 1 -1.5238 -0.9669 4.9647 35 1 1.4523 -2.7778 0.6579 36 1 3.1330 -2.6591 1.2790 37 1 2.7179 -2.7047 -1.3933 38 1 3.9126 -1.5592 -0.7135 39 1 2.0109 -2.2341 -3.5036 40 1 3.4490 -1.1854 -3.5197 41 1 1.3676 0.1363 -4.8976 42 1 2.2702 0.3885 -7.4253 43 1 0.0398 -1.6953 -7.3175 44 1 -0.0372 -0.0364 -6.6738 45 1 0.2867 0.8779 -8.9401 46 1 -1.1140 -0.2207 -8.9215 47 1 2.3549 0.0997 -9.9501 48 1 2.3983 -1.5423 -10.6365 49 1 3.6039 -1.4099 -8.4531 50 1 2.2077 -2.5131 -8.3770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179734457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:23 Heat of formation + Delta-G solvation = -126.764068 kcal Electronic energy + Delta-G solvation = -29819.652281 eV Core-core repulsion = 25653.078687 eV Total energy + Delta-G solvation = -4166.573594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70826 -41.08746 -39.60739 -38.91637 -35.97279 -35.63100 -34.73683 -33.52397 -32.16191 -32.03460 -31.00023 -28.98992 -26.80304 -26.50732 -25.28766 -24.47373 -23.83703 -22.23189 -21.24943 -20.96940 -20.04334 -19.45049 -18.79518 -17.78499 -17.39406 -17.23546 -16.95422 -16.88070 -16.68833 -16.27436 -15.93787 -15.76300 -15.65998 -15.43599 -14.99417 -14.68848 -14.55064 -14.48474 -14.12207 -13.90114 -13.66145 -13.52230 -13.29244 -13.21917 -13.03335 -12.92078 -12.88572 -12.57508 -12.52947 -12.30627 -12.07600 -12.01503 -11.72158 -11.62018 -11.54567 -11.48786 -11.04859 -10.98821 -10.93254 -10.48389 -10.28931 -9.75437 -9.01415 -7.94280 -5.23007 1.41020 1.49272 1.49809 1.51731 1.57839 1.59991 2.25134 2.57397 2.99325 3.25779 3.40346 3.52119 3.67504 3.72915 3.75267 3.82293 3.92483 4.01040 4.17112 4.20940 4.23690 4.29236 4.32788 4.36575 4.40399 4.51735 4.54389 4.61363 4.64349 4.67752 4.76184 4.80172 4.83312 4.85222 5.03817 5.06229 5.09447 5.14226 5.20844 5.24469 5.26580 5.30355 5.48415 5.55723 6.27679 6.27742 6.37835 6.44399 6.93484 7.09163 7.35215 8.08887 8.31802 9.29491 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.001871 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.350925 B =14965.480765 C =15457.393477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.137 3.863 3 H 0.071 0.929 4 C 0.164 3.836 5 H 0.068 0.932 6 N -0.732 5.732 7 C -0.235 4.235 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.970 5.970 11 Si 0.972 3.028 12 H -0.263 1.263 13 H -0.298 1.298 14 H -0.297 1.297 15 C -0.145 4.145 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.523 3.477 19 O -0.570 6.570 20 C 0.111 3.889 21 N -0.713 5.713 22 C 0.521 3.479 23 O -0.574 6.574 24 C -0.104 4.104 25 C -0.146 4.146 26 C 0.060 3.940 27 O -0.405 6.405 28 C 0.061 3.939 29 C -0.133 4.133 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.380 0.620 34 H 0.250 0.750 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.416 0.584 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.082 0.918 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 1.273 -26.803 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.089 0.911 4 C 0.054 3.946 5 H 0.086 0.914 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.621 5.621 11 Si 0.801 3.199 12 H -0.187 1.187 13 H -0.225 1.225 14 H -0.225 1.225 15 C -0.186 4.186 16 C -0.022 4.022 17 N -0.336 5.336 18 C 0.313 3.687 19 O -0.450 6.450 20 C -0.016 4.016 21 N -0.368 5.368 22 C 0.309 3.691 23 O -0.453 6.453 24 C -0.125 4.125 25 C -0.184 4.184 26 C -0.016 4.016 27 O -0.324 6.324 28 C -0.016 4.016 29 C -0.171 4.171 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.216 0.784 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.255 0.745 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.088 0.912 48 H 0.124 0.876 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.446 0.971 -26.938 28.247 hybrid contribution -0.657 0.238 1.756 1.890 sum 7.789 1.209 -25.182 26.387 Atomic orbital electron populations 1.21827 0.95582 1.01392 1.01511 1.21596 0.94395 0.95816 0.84960 0.91089 1.21398 0.92134 0.94219 0.86841 0.91393 1.42841 1.05725 1.85515 1.03409 1.19679 0.93274 1.38661 0.85092 0.90005 1.25546 0.95429 1.03880 1.02042 1.69826 1.00311 1.58835 1.33160 0.85093 0.77944 0.76455 0.80366 1.18687 1.22535 1.22454 1.23365 1.01448 0.98752 0.95062 1.22610 0.95383 0.88544 0.95648 1.48522 1.49883 1.30946 1.04275 1.20436 0.80540 0.84817 0.82953 1.90660 1.40307 1.30585 1.83408 1.21026 1.01655 0.97576 0.81387 1.45775 1.52941 1.33826 1.04255 1.21031 0.78988 0.82993 0.86078 1.90698 1.38817 1.27680 1.88148 1.21415 0.97821 1.02512 0.90710 1.22213 0.92909 1.03167 1.00104 1.22711 0.99076 0.94545 0.85288 1.87931 1.20290 1.70448 1.53754 1.22731 0.80284 1.01831 0.96710 1.21996 1.01553 0.99556 0.94011 0.93495 0.92496 0.92034 0.78363 0.94150 0.92563 0.89329 0.88334 0.88382 0.87737 0.86940 0.74544 0.85836 0.91925 0.88847 0.91028 0.87544 0.91162 0.87592 0.89923 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 7.94 71.98 0.57 -4.68 16 2 C 0.14 4.44 3.49 45.34 0.16 4.59 16 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 5.83 3.44 46.18 0.16 5.99 16 5 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 6 N -0.73 -34.51 5.02 -317.31 -1.59 -36.10 16 7 C -0.24 -12.28 9.98 84.03 0.84 -11.44 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 11 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 15 C -0.15 -4.20 6.77 31.99 0.22 -3.99 16 16 C 0.10 2.08 6.69 86.86 0.58 2.66 16 17 N -0.60 -15.66 3.08 -788.03 -2.43 -18.08 16 18 C 0.52 13.20 7.70 87.66 0.68 13.87 16 19 O -0.57 -17.53 14.55 -3.01 -0.04 -17.57 16 20 C 0.11 2.14 5.16 85.63 0.44 2.58 16 21 N -0.71 -13.18 5.43 -466.79 -2.54 -15.72 16 22 C 0.52 10.16 7.16 87.66 0.63 10.78 16 23 O -0.57 -15.18 15.97 -3.04 -0.05 -15.23 16 24 C -0.10 -1.38 2.61 -11.42 -0.03 -1.41 16 25 C -0.15 -1.77 5.30 30.69 0.16 -1.60 16 26 C 0.06 0.64 6.84 72.02 0.49 1.14 16 27 O -0.41 -6.21 10.77 -148.98 -1.60 -7.81 16 28 C 0.06 0.68 6.84 72.01 0.49 1.17 16 29 C -0.13 -1.88 4.74 30.68 0.15 -1.73 16 30 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 31 H 0.06 2.32 6.74 -2.39 -0.02 2.31 16 32 H 0.06 2.18 6.74 -2.39 -0.02 2.17 16 33 H 0.38 19.44 4.97 -92.71 -0.46 18.98 16 34 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 1.60 7.48 -2.38 -0.02 1.58 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.94 7.85 -2.38 -0.02 1.92 16 40 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.42 7.22 6.94 -92.71 -0.64 6.57 16 42 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.09 0.93 7.68 -2.39 -0.02 0.91 16 45 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 1.10 8.03 -2.38 -0.02 1.08 16 Total: -1.00 -70.63 395.36 -0.10 -70.73 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.15 Total: 36.62 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.00 Total: 14.13 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.27 Total: -127.65 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -1.70 Total: -40.61 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.63 -0.10 -70.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179734457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.035 kcal (2) G-P(sol) polarization free energy of solvation -70.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds